Pseudomonas mendocina
Pseudomonas
Ralstonia
Cresols
Oxygenases
Pseudomonas aeruginosa
Cometabolism of methyl tertiary butyl ether and gaseous n-alkanes by Pseudomonas mendocina KR-1 grown on C5 to C8 n-alkanes. (1/16)
Pseudomonas mendocina KR-1 grew well on toluene, n-alkanes (C5 to C8), and 1 degrees alcohols (C2 to C8) but not on other aromatics, gaseous n-alkanes (C1 to C4), isoalkanes (C4 to C6), 2 degrees alcohols (C3 to C8), methyl tertiary butyl ether (MTBE), or tertiary butyl alcohol (TBA). Cells grown under carbon-limited conditions on n-alkanes in the presence of MTBE (42 micromoles) oxidized up to 94% of the added MTBE to TBA. Less than 3% of the added MTBE was oxidized to TBA when cells were grown on either 1 degrees alcohols, toluene, or dextrose in the presence of MTBE. Concentrated n-pentane-grown cells oxidized MTBE to TBA without a lag phase and without generating tertiary butyl formate (TBF) as an intermediate. Neither TBF nor TBA was consumed by n-pentane-grown cells, while formaldehyde, the expected C1 product of MTBE dealkylation, was rapidly consumed. Similar Ks values for MTBE were observed for cells grown on C5 to C8 n-alkanes (12.95 +/- 2.04 mM), suggesting that the same enzyme oxidizes MTBE in cells grown on each n-alkane. All growth-supporting n-alkanes (C5 to C8) inhibited MTBE oxidation by resting n-pentane-grown cells. Propane (Ki = 53 micromoles) and n-butane (Ki = 16 micromoles) also inhibited MTBE oxidation, and both gases were also consumed by cells during growth on n-pentane. Cultures grown on C5 to C8 n-alkanes also exhibited up to twofold-higher levels of growth in the presence of propane or n-butane, whereas no growth stimulation was observed with methane, ethane, MTBE, TBA, or formaldehyde. The results are discussed in terms of their impacts on our understanding of MTBE biodegradation and cometabolism. (+info)Altering toluene 4-monooxygenase by active-site engineering for the synthesis of 3-methoxycatechol, methoxyhydroquinone, and methylhydroquinone. (2/16)
Wild-type toluene 4-monooxygenase (T4MO) of Pseudomonas mendocina KR1 oxidizes toluene to p-cresol (96%) and oxidizes benzene sequentially to phenol, to catechol, and to 1,2,3-trihydroxybenzene. In this study T4MO was found to oxidize o-cresol to 3-methylcatechol (91%) and methylhydroquinone (9%), to oxidize m-cresol and p-cresol to 4-methylcatechol (100%), and to oxidize o-methoxyphenol to 4-methoxyresorcinol (87%), 3-methoxycatechol (11%), and methoxyhydroquinone (2%). Apparent Vmax values of 6.6 +/- 0.9 to 10.7 +/- 0.1 nmol/min/ mg of protein were obtained for o-, m-, and p-cresol oxidation by wild-type T4MO, which are comparable to the toluene oxidation rate (15.1 +/- 0.8 nmol/min/mg of protein). After these new reactions were discovered, saturation mutagenesis was performed near the diiron catalytic center at positions I100, G103, and A107 of the alpha subunit of the hydroxylase (TmoA) based on directed evolution of the related toluene o-monooxygenase of Burkholderia cepacia G4 (K. A. Canada, S. Iwashita, H. Shim, and T. K. Wood, J. Bacteriol. 184:344-349, 2002) and a previously reported T4MO G103L regiospecific mutant (K. H. Mitchell, J. M. Studts, and B. G. Fox, Biochemistry 41:3176-3188, 2002). By using o-cresol and o-methoxyphenol as model substrates, regiospecific mutants of T4MO were created; for example, TmoA variant G103A/A107S produced 3-methylcatechol (98%) from o-cresol twofold faster and produced 3-methoxycatechol (82%) from 1 mM o-methoxyphenol seven times faster than the wild-type T4MO (1.5 +/- 0.2 versus 0.21 +/- 0.01 nmol/min/mg of protein). Variant I100L produced 3-methoxycatechol from o-methoxyphenol four times faster than wild-type T4MO, and G103S/A107T produced methylhydroquinone (92%) from o-cresol fourfold faster than wild-type T4MO and there was 10 times more in terms of the percentage of the product. Variant G103S produced 40-fold more methoxyhydroquinone from o-methoxyphenol than the wild-type enzyme produced (80 versus 2%) and produced methylhydroquinone (80%) from o-cresol. Hence, the regiospecific oxidation of o-methoxyphenol and o-cresol was changed for significant synthesis of 3-methoxycatechol, methoxyhydroquinone, 3-methylcatechol, and methylhydroquinone. The enzyme variants also demonstrated altered monohydroxylation regiospecificity for toluene; for example, G103S/A107G formed 82% o-cresol, so saturation mutagenesis converted T4MO into an ortho-hydroxylating enzyme. Furthermore, G103S/A107T formed 100% p-cresol from toluene; hence, a better para-hydroxylating enzyme than wild-type T4MO was formed. Structure homology modeling suggested that hydrogen bonding interactions of the hydroxyl groups of altered residues S103, S107, and T107 influence the regiospecificity of the oxygenase reaction. (+info)Oxidation of benzene to phenol, catechol, and 1,2,3-trihydroxybenzene by toluene 4-monooxygenase of Pseudomonas mendocina KR1 and toluene 3-monooxygenase of Ralstonia pickettii PKO1. (3/16)
Aromatic hydroxylations are important bacterial metabolic processes but are difficult to perform using traditional chemical synthesis, so to use a biological catalyst to convert the priority pollutant benzene into industrially relevant intermediates, benzene oxidation was investigated. It was discovered that toluene 4-monooxygenase (T4MO) of Pseudomonas mendocina KR1, toluene 3-monooxygenase (T3MO) of Ralstonia pickettii PKO1, and toluene ortho-monooxygenase (TOM) of Burkholderia cepacia G4 convert benzene to phenol, catechol, and 1,2,3-trihydroxybenzene by successive hydroxylations. At a concentration of 165 microM and under the control of a constitutive lac promoter, Escherichia coli TG1/pBS(Kan)T4MO expressing T4MO formed phenol from benzene at 19 +/- 1.6 nmol/min/mg of protein, catechol from phenol at 13.6 +/- 0.3 nmol/min/mg of protein, and 1,2,3-trihydroxybenzene from catechol at 2.5 +/- 0.5nmol/min/mg of protein. The catechol and 1,2,3-trihydroxybenzene products were identified by both high-pressure liquid chromatography and mass spectrometry. When analogous plasmid constructs were used, E. coli TG1/pBS(Kan)T3MO expressing T3MO formed phenol, catechol, and 1,2,3-trihydroxybenzene at rates of 3 +/- 1, 3.1 +/- 0.3, and 0.26 +/- 0.09 nmol/min/mg of protein, respectively, and E. coli TG1/pBS(Kan)TOM expressing TOM formed 1,2,3-trihydroxybenzene at a rate of 1.7 +/- 0.3 nmol/min/mg of protein (phenol and catechol formation rates were 0.89 +/- 0.07 and 1.5 +/- 0.3 nmol/min/mg of protein, respectively). Hence, the rates of synthesis of catechol by both T3MO and T4MO and the 1,2,3-trihydroxybenzene formation rate by TOM were found to be comparable to the rates of oxidation of the natural substrate toluene for these enzymes (10.0 +/- 0.8, 4.0 +/- 0.6, and 2.4 +/- 0.3 nmol/min/mg of protein for T4MO, T3MO, and TOM, respectively, at a toluene concentration of 165 microM). (+info)Comparative genetic diversity of Pseudomonas stutzeri genomovars, clonal structure, and phylogeny of the species. (4/16)
A combined phylogenetic and multilocus DNA sequence analysis of 26 Pseudomonas stutzeri strains distributed within the 9 genomovars of the species has been performed. Type strains of the two most closely related species (P. balearica, former genomovar 6, and P. mendocina), together with P. aeruginosa, as the type species of the genus, have been included in the study. The extremely high genetic diversity and the clonal structure of the species were confirmed by the sequence analysis. Clustering of strains in the consensus phylogeny inferred from the analysis of seven nucleotide sequences (16S ribosomal DNA, internally transcribed spacer region 1, gyrB, rpoD, nosZ, catA, and nahH) confirmed the monophyletic origin of the genomovars within the Pseudomonas branch and is in good agreement with earlier DNA-DNA similarity analysis, indicating that the selected genes are representative of the whole genome in members of the species. (+info)Comparative NMR study on the impact of point mutations on protein stability of Pseudomonas mendocina lipase. (5/16)
In this work we compare the dynamics and conformational stability of Pseudomonas mendocina lipase enzyme and its F180P/S205G mutant that shows higher activity and stability for use in washing powders. Our NMR analyses indicate virtually identical structures but reveal remarkable differences in local dynamics, with striking correspondence between experimental data (i.e., (15)N relaxation and H/D exchange rates) and data from Molecular Dynamics simulations. While overall the cores of both proteins are very rigid on the pico- to nanosecond timescale and are largely protected from H/D exchange, the two point mutations stabilize helices alpha1, alpha4, and alpha5 and locally destabilize the H-bond network of the beta-sheet (beta7-beta9). In particular, it emerges that helix alpha5, undergoing some fast destabilizing motions (on the pico- to nanosecond timescale) in wild-type lipase, is substantially rigidified by the mutation of Phe180 for a proline at its N terminus. This observation could be explained by the release of some penalizing strain, as proline does not require any "N-capping" hydrogen bond acceptor in the i+3 position. The combined experimental and simulated data thus indicate that reduced molecular flexibility of the F180P/S205G mutant lipase underlies its increased stability, and thus reveals a correlation between microscopic dynamics and macroscopic thermodynamic properties. This could contribute to the observed altered enzyme activity, as may be inferred from recent studies linking enzyme kinetics to their local molecular dynamics. (+info)Biotransformation of N-nitrosodimethylamine by Pseudomonas mendocina KR1. (6/16)
N-Nitrosodimethylamine (NDMA) is a potent carcinogen and an emerging contaminant in groundwater and drinking water. The metabolism of NDMA in mammalian cells has been widely studied, but little information is available concerning the microbial transformation of this compound. The objective of this study was to elucidate the pathway(s) of NDMA biotransformation by Pseudomonas mendocina KR1, a strain that possesses toluene-4-monooxygenase (T4MO). P. mendocina KR1 was observed to initially oxidize NDMA to N-nitrodimethylamine (NTDMA), a novel metabolite. The use of 18O2 and H(2)18O revealed that the oxygen added to NDMA to produce NTDMA was derived from atmospheric O2. Experiments performed with a pseudomonad expressing cloned T4MO confirmed that T4MO catalyzes this initial reaction. The NTDMA produced by P. mendocina KR1 did not accumulate, but rather it was metabolized further to produce N-nitromethylamine (88 to 94% recovery) and a trace amount of formaldehyde (HCHO). Small quantities of methanol (CH3OH) were also detected when the strain was incubated with NDMA but not during incubation with either NTDMA or HCHO. The formation of methanol is hypothesized to occur via a second, minor pathway mediated by an initial alpha-hydroxylation of the nitrosamine. Strain KR1 did not grow on NDMA or mineralize significant quantities of the compound to carbon dioxide, suggesting that the degradation process is cometabolic. (+info)Effect of exogenous reductant on growth and iron mobilization from ferrihydrite by the Pseudomonas mendocina ymp strain. (7/16)
Growth of the Pseudomonas mendocina ymp strain on insoluble ferrihydrite is enhanced by exogenous reductants with concurrent increase in soluble iron concentrations. This shows that exogenous reductants play a substantial role in the overall microbial iron bioavailability. The exogenous reductants may work together with the siderophores, Fe-scavenging agents, to facilitate ferrihydrite dissolution. (+info)Identification, isolation, and analysis of a gene cluster involved in iron acquisition by Pseudomonas mendocina ymp. (8/16)
Microbial acquisition of iron from natural sources in aerobic environments is a little-studied process that may lead to mineral instability and trace metal mobilization. Pseudomonas mendocina ymp was isolated from the Yucca Mountain Site for long-term nuclear waste storage. Its ability to solubilize a variety of Fe-containing minerals under aerobic conditions has been previously investigated but its molecular and genetic potential remained uncharacterized. Here, we have shown that the organism produces a hydroxamate and not a catecholate-based siderophore that is synthesized via non-ribosomal peptide synthetases. Gene clustering patterns observed in other Pseudomonads suggested that hybridizing multiple probes to the same library could allow for the identification of one or more clusters of syntenic siderophore-associated genes. Using this approach, two independent clusters were identified. An unfinished draft genome sequence of P. mendocina ymp indicated that these mapped to two independent contigs. The sequenced clusters were investigated informatically and shown to contain respectively a potentially complete set of genes responsible for siderophore biosynthesis, uptake, and regulation, and an incomplete set of genes with low individual homology to siderophore-associated genes. A mutation in the cluster's pvdA homolog (pmhA) resulted in a siderophore-null phenotype, which could be reversed by complementation. The organism likely produces one siderophore with possibly different isoforms and a peptide backbone structure containing seven residues (predicted sequence: Acyl-Asp-Dab-Ser-fOHOrn-Ser-fOHorn). A similar approach could be applied for discovery of Fe- and siderophore-associated genes in unsequenced or poorly annotated organisms. (+info)"Pseudomonas mendocina" is a gram-negative, rod-shaped bacterium that belongs to the family Pseudomonadaceae. It is commonly found in soil and water environments. This species is generally considered to be nonpathogenic, meaning it does not typically cause disease in humans. However, there have been rare cases of infection associated with this bacterium, particularly in individuals with weakened immune systems.
The name "mendocina" comes from the location where the bacterium was first isolated, which is Mendocino County in California, USA. Like other Pseudomonas species, it can survive under a wide range of environmental conditions and can metabolize various organic compounds as its energy source.
It's worth noting that while "Pseudomonas mendocina" is not a common human pathogen, identifying the specific bacterial species involved in an infection is important for appropriate treatment. Therefore, laboratory testing and identification of bacteria to the species level can be helpful in guiding medical decision-making.
"Pseudomonas" is a genus of Gram-negative, rod-shaped bacteria that are widely found in soil, water, and plants. Some species of Pseudomonas can cause disease in animals and humans, with P. aeruginosa being the most clinically relevant as it's an opportunistic pathogen capable of causing various types of infections, particularly in individuals with weakened immune systems.
P. aeruginosa is known for its remarkable ability to resist many antibiotics and disinfectants, making infections caused by this bacterium difficult to treat. It can cause a range of healthcare-associated infections, such as pneumonia, bloodstream infections, urinary tract infections, and surgical site infections. In addition, it can also cause external ear infections and eye infections.
Prompt identification and appropriate antimicrobial therapy are crucial for managing Pseudomonas infections, although the increasing antibiotic resistance poses a significant challenge in treatment.
Toluene is not a medical condition or disease, but it is a chemical compound that is widely used in various industrial and commercial applications. Medically, toluene can be relevant as a substance of abuse due to its intoxicating effects when inhaled or sniffed. It is a colorless liquid with a distinctive sweet aroma, and it is a common solvent found in many products such as paint thinners, adhesives, and rubber cement.
In the context of medical toxicology, toluene exposure can lead to various health issues, including neurological damage, cognitive impairment, memory loss, nausea, vomiting, and hearing and vision problems. Chronic exposure to toluene can also cause significant harm to the developing fetus during pregnancy, leading to developmental delays, behavioral problems, and physical abnormalities.
"Ralstonia" is a genus of gram-negative, aerobic bacteria that are commonly found in soil and water. Some species of Ralstonia are known to cause healthcare-associated infections, particularly in patients with compromised immune systems. These infections can include pneumonia, bacteremia, and meningitis. One notable species, Ralstonia solanacearum, is a plant pathogen that causes bacterial wilt in a wide range of plants.
Ralstonia bacteria are known for their ability to form biofilms, which can make them resistant to antibiotics and disinfectants. They can also survive in harsh environments, such as those with low nutrient availability and high salt concentrations. These characteristics make Ralstonia a challenging organism to control in healthcare settings and in the environment.
It's important to note that while Ralstonia bacteria can cause serious infections, they are not typically considered highly virulent or contagious. Instead, infections are often associated with contaminated medical equipment or solutions, such as intravenous fluids, respiratory therapy equipment, and contaminated water sources. Proper infection control practices, including environmental cleaning and disinfection, can help prevent the spread of Ralstonia in healthcare settings.
Cresols are a group of chemical compounds that are phenolic derivatives of benzene, consisting of methyl substituted cresidines. They have the formula C6H4(OH)(\_3CH3). There are three isomers of cresol, depending on the position of the methyl group: ortho-cresol (m-cresol), meta-cresol (p-cresol), and para-cresol (o-cresol). Cresols are used as disinfectants, antiseptics, and preservatives in various industrial and commercial applications. They have a characteristic odor and are soluble in alcohol and ether. In medical terms, cresols may be used as topical antiseptic agents, but they can also cause skin irritation and sensitization.
Oxygenases are a class of enzymes that catalyze the incorporation of molecular oxygen (O2) into their substrates. They play crucial roles in various biological processes, including the biosynthesis of many natural products, as well as the detoxification and degradation of xenobiotics (foreign substances).
There are two main types of oxygenases: monooxygenases and dioxygenases. Monooxygenases introduce one atom of molecular oxygen into a substrate while reducing the other to water. An example of this type of enzyme is cytochrome P450, which is involved in drug metabolism and steroid hormone synthesis. Dioxygenases, on the other hand, incorporate both atoms of molecular oxygen into their substrates, often leading to the formation of new carbon-carbon bonds or the cleavage of existing ones.
It's important to note that while oxygenases are essential for many life-sustaining processes, they can also contribute to the production of harmful reactive oxygen species (ROS) during normal cellular metabolism. An imbalance in ROS levels can lead to oxidative stress and damage to cells and tissues, which has been linked to various diseases such as cancer, neurodegeneration, and cardiovascular disease.
"Pseudomonas aeruginosa" is a medically important, gram-negative, rod-shaped bacterium that is widely found in the environment, such as in soil, water, and on plants. It's an opportunistic pathogen, meaning it usually doesn't cause infection in healthy individuals but can cause severe and sometimes life-threatening infections in people with weakened immune systems, burns, or chronic lung diseases like cystic fibrosis.
P. aeruginosa is known for its remarkable ability to resist many antibiotics and disinfectants due to its intrinsic resistance mechanisms and the acquisition of additional resistance determinants. It can cause various types of infections, including respiratory tract infections, urinary tract infections, gastrointestinal infections, dermatitis, and severe bloodstream infections known as sepsis.
The bacterium produces a variety of virulence factors that contribute to its pathogenicity, such as exotoxins, proteases, and pigments like pyocyanin and pyoverdine, which aid in iron acquisition and help the organism evade host immune responses. Effective infection control measures, appropriate use of antibiotics, and close monitoring of high-risk patients are crucial for managing P. aeruginosa infections.
Polyhydroxyalkanoates (PHAs) are naturally occurring, biodegradable polyesters accumulated by some bacteria as intracellular granules under conditions of limiting nutrients, typically carbon source excess and nutrient deficiency. They serve as a form of energy reserve and can be produced from renewable resources such as sugars, lipids, or organic acids. PHAs have potential applications in various fields including packaging, agriculture, pharmaceuticals, and medicine due to their biodegradability and biocompatibility.
Pseudomonas mendocina
Sulfur-reducing bacteria
1,2-Benzoquinone
4-Hydroxybenzoic acid
Blue agave
Actinomucor elegans
4-hydroxybenzaldehyde dehydrogenase
Hydrocarbonoclastic bacteria
Pseudomonas
Cutinase
Host microbe interactions in Caenorhabditis elegans
Aerobic denitrification
Pseudomonas stutzeri
List of MeSH codes (B03)
Pseudomonas mendocina - Wikipedia
Overview: MDS 3756, Pseudomonas mendocina NK-01
Pseudomonas mendocina | Profiles RNS
CATH Domain 3q2aE00
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Ophiocordyceps subramaniannii
Putida2
- This enzyme participates in benzoate degradation via hydroxylation and 2,4-dichlorobenzoate degradation and is found in Pseudomonas putida and Pseudomonas fluorescens. (np-mrd.org)
- Bacterial metabolism selected lignin model compounds (vanillin, vanillate, 4- hydroxybenzoate, p-coumarate, benzoate, and ferulate) was carried out with three of the Pseudomonas isolates and in addition with the strain Pseudomonas putida KT2440 from a Introduction culture collection. (lu.se)
Strain1
- A strain of the bacterium Pseudomonas mendocina metabolises benzoic acid , yielding 1,2-benzoquinone via catechol . (alchetron.com)
Bacteria6
- A species of gram-negative bacteria in the genus PSEUDOMONAS, which is found in SOIL and WATER. (jefferson.edu)
- Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. (up.ac.za)
- Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. (up.ac.za)
- Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. (up.ac.za)
- This enzyme participates in toluene and xylene degradation in bacteria such as Pseudomonas mendocina. (np-mrd.org)
- In vitro, biological evaluation of compounds have been carried out against pathogenic Gram positive bacteria Bacillus subtilis, Micrococcus luteus, Gram negative bacteria Pseudomonas aeruginosa, Pseudomonas mendocina and fungi Verticillum dahliae, Cladosporium herbarium, Trichophyton soudanense. (ajrconline.org)
Genome2
- If you have used this database, please ensure that you acknowledge this most recent Pseudomonas Genome Database publication rather than just the website URL. (pseudomonas.com)
- Enhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome database. (pseudomonas.com)
Bacterium2
- Pseudomonas mendocina is a Gram-negative environmental bacterium that can cause opportunistic infections, such as infective endocarditis and spondylodiscitis, although cases are very rare. (wikipedia.org)
- Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. (up.ac.za)
Brassicacearum subsp1
- Pseudomonas brassicacearum subsp. (pseudomonas.com)
Isolates2
- MBLs have been reported worldwide among Pseudomonas aeruginosa isolates ( 2 ). (blogspot.com)
- ribosomal RNA identification of the isolates showed high score similarity with Pseudomonas spp. (lu.se)
Growth1
- Growth on Pseudomonas mendocina (MSPm1) Increases Attraction to 2-nonanone. (ucsf.edu)
Group1
- Based on 16S rRNA analysis, P. mendocina has been placed in the P. aeruginosa group. (wikipedia.org)
Website1
- This graph shows the total number of publications written about "Pseudomonas mendocina" by people in this website by year, and whether "Pseudomonas mendocina" was a major or minor topic of these publications. (jefferson.edu)
Syringae pv3
- Pseudomonas syringae pv. (lbl.gov)
- Oxygen-dependent choline dehydrogenase OS=Pseudomonas syringae pv. (uu.nl)
- Chemoperception of Specific Amino Acids Controls Phytopathogenicity in Pseudomonas syringae pv. (paperbase.net)
Aeruginosa1
- Based on 16S rRNA analysis, P. mendocina has been placed in the P. aeruginosa group. (wikipedia.org)
Bacteria5
- While several bacteria such as Pseudomonas sp. (hindawi.com)
- A species of gram-negative bacteria in the genus PSEUDOMONAS , which is found in SOIL and WATER . (nih.gov)
- General Information: Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. (up.ac.za)
- Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. (up.ac.za)
- Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. (up.ac.za)
Fluorescens1
- 11. Pyrimidine biosynthetic pathway of Pseudomonas fluorescens. (nih.gov)
Savastanoi pv1
- Pseudomonas savastanoi pv. (paperbase.net)
Alcaligenes1
- 12. Effect of carbon source on pyrimidine biosynthesis in Pseudomonas alcaligenes ATCC 14909. (nih.gov)
Pyrimidine3
Genera1
- OYAIZU, H. 1997: The Phylogeny of the Genera Chryseomonas, Flavimonas, and Pseudomonas Supports Synonymy of These Three Genera. (nzor.org.nz)