Metabolomics
Metabolome
Metabolism
Mass Spectrometry
Metabolic Networks and Pathways
Gas Chromatography-Mass Spectrometry
Principal Component Analysis
Magnetic Resonance Spectroscopy
Systems Biology
Software
Tandem Mass Spectrometry
Biological Markers
Urinalysis
Nutrigenomics
Spectrometry, Mass, Electrospray Ionization
Biological Psychiatry
Least-Squares Analysis
Databases, Factual
Computational Biology
Discriminant Analysis
Isotope Labeling
Early detection of ovarian cancer: new technologies in pursuit of a disease that is neither common nor rare. (1/1398)
Elimination of cancer in the 21st Century is likely to depend not only on more effective individualized treatment, but also upon earlier detection and prevention of different malignancies. Screening strategies for ovarian cancer have centered on the serum tumor marker CA 125, transvaginal sonography (TVS), or sequential use of the two modalities. A single determination of CA 125 is neither sufficiently sensitive nor specific to be used as an initial stage in screening. Specificity can be improved by monitoring CA 125 over time with an algorithm that estimates risk of ovarian cancer. Sensitivity of CA125 can be improved by use of multiple markers in combination. Gene expression array analysis, proteomics and lipomics are being utilized to identify markers that can be used in combination with CA 125 to detect >95% of early stage ovarian cancers. To maintain high specificity, values for different markers are being combined using novel approaches of neural network analysis and mixed multivariate analysis. Sequential use of multiple markers and TVS could provide a cost-effective strategy to detect a disease of intermediate prevalence. (+info)Acquired obesity is associated with changes in the serum lipidomic profile independent of genetic effects--a monozygotic twin study. (2/1398)
Both genetic and environmental factors are involved in the etiology of obesity and the associated lipid disturbances. We determined whether acquired obesity is associated with changes in global serum lipid profiles independent of genetic factors in young adult monozygotic (MZ) twins. 14 healthy MZ pairs discordant for obesity (10 to 25 kg weight difference) and ten weight concordant control pairs aged 24-27 years were identified from a large population-based study. Insulin sensitivity was assessed by the euglycemic clamp technique, and body composition by DEXA (% body fat) and by MRI (subcutaneous and intra-abdominal fat). Global characterization of lipid molecular species in serum was performed by a lipidomics strategy using liquid chromatography coupled to mass spectrometry. Obesity, independent of genetic influences, was primarily related to increases in lysophosphatidylcholines, lipids found in proinflammatory and proatherogenic conditions and to decreases in ether phospholipids, which are known to have antioxidant properties. These lipid changes were associated with insulin resistance, a pathogonomic characteristic of acquired obesity in these young adult twins. Our results show that obesity, already in its early stages and independent of genetic influences, is associated with deleterious alterations in the lipid metabolism known to facilitate atherogenesis, inflammation and insulin resistance. (+info)Perceiving molecular evolution processes in Escherichia coli by comprehensive metabolite and gene expression profiling. (3/1398)
(+info)High-throughput nuclear magnetic resonance metabolomic footprinting for tissue engineering. (4/1398)
(+info)Metadegradomics: toward in vivo quantitative degradomics of proteolytic post-translational modifications of the cancer proteome. (5/1398)
(+info)Proteotoxic stress and cell lifespan control. (6/1398)
Eukaryotic cells continuously integrate intrinsic and extrinsic signals to adapt to the environment. When exposed to stressful conditions, cells activate compartment-specific adaptive responses. If these are insufficient, apoptosis ensues as an organismal defense line. The mechanisms that sense stress and set the transition from adaptive to mal-adaptive responses, activating apoptotic programs, are the subject of intense studies, also for their potential impact in cancer and degenerative disorders. In the former case, one would aim at lowering the threshold, in the latter instead to increase it. Protein synthesis, consuming energy for anabolic processes as well as for byproducts disposal, can be a significant source of stress, particularly when difficult-to-fold proteins are produced. Recent work from our and other laboratories on the differentiation of antibody secreting cells, revealed a regulatory circuit that integrates protein synthesis, secretion and degradation (proteostasis), into cell lifespan determination. The apoptotic elimination - after an industrious, yet short lifetime - of terminal immune effectors is crucial to maintain immune homeostasis. Linking proteostasis to cell death, this paradigm might prove useful for biotechnological purposes, and the design of novel anti-cancer therapies. (+info)Metabonomic analysis of exhaled breath condensate in adults by nuclear magnetic resonance spectroscopy. (7/1398)
(+info)Toxoplasma: the next 100years. (8/1398)
(+info)Metabolomics is a branch of "omics" sciences that deals with the comprehensive and quantitative analysis of all metabolites, which are the small molecule intermediates and products of metabolism, in a biological sample. It involves the identification and measurement of these metabolites using various analytical techniques such as mass spectrometry and nuclear magnetic resonance spectroscopy. The resulting data provides a functional readout of the physiological state of an organism, tissue or cell, and can be used to identify biomarkers of disease, understand drug action and toxicity, and reveal new insights into metabolic pathways and regulatory networks.
The metabolome is the complete set of small molecule metabolites, such as carbohydrates, lipids, nucleic acids, and amino acids, present in a biological sample at a given moment. It reflects the physiological state of a cell, tissue, or organism and provides information about the biochemical processes that are taking place. The metabolome is dynamic and constantly changing due to various factors such as genetics, environment, diet, and disease. Studying the metabolome can help researchers understand the underlying mechanisms of health and disease and develop diagnostic tools and treatments for various medical conditions.
Metabolism is the complex network of chemical reactions that occur within our bodies to maintain life. It involves two main types of processes: catabolism, which is the breaking down of molecules to release energy, and anabolism, which is the building up of molecules using energy. These reactions are necessary for the body to grow, reproduce, respond to environmental changes, and repair itself. Metabolism is a continuous process that occurs at the cellular level and is regulated by enzymes, hormones, and other signaling molecules. It is influenced by various factors such as age, genetics, diet, physical activity, and overall health status.
Mass spectrometry (MS) is an analytical technique used to identify and quantify the chemical components of a mixture or compound. It works by ionizing the sample, generating charged molecules or fragments, and then measuring their mass-to-charge ratio in a vacuum. The resulting mass spectrum provides information about the molecular weight and structure of the analytes, allowing for identification and characterization.
In simpler terms, mass spectrometry is a method used to determine what chemicals are present in a sample and in what quantities, by converting the chemicals into ions, measuring their masses, and generating a spectrum that shows the relative abundances of each ion type.
Liquid chromatography (LC) is a type of chromatography technique used to separate, identify, and quantify the components in a mixture. In this method, the sample mixture is dissolved in a liquid solvent (the mobile phase) and then passed through a stationary phase, which can be a solid or a liquid that is held in place by a solid support.
The components of the mixture interact differently with the stationary phase and the mobile phase, causing them to separate as they move through the system. The separated components are then detected and measured using various detection techniques, such as ultraviolet (UV) absorbance or mass spectrometry.
Liquid chromatography is widely used in many areas of science and medicine, including drug development, environmental analysis, food safety testing, and clinical diagnostics. It can be used to separate and analyze a wide range of compounds, from small molecules like drugs and metabolites to large biomolecules like proteins and nucleic acids.
Metabolic networks and pathways refer to the complex interconnected series of biochemical reactions that occur within cells to maintain life. These reactions are catalyzed by enzymes and are responsible for the conversion of nutrients into energy, as well as the synthesis and breakdown of various molecules required for cellular function.
A metabolic pathway is a series of chemical reactions that occur in a specific order, with each reaction being catalyzed by a different enzyme. These pathways are often interconnected, forming a larger network of interactions known as a metabolic network.
Metabolic networks can be represented as complex diagrams or models, which show the relationships between different pathways and the flow of matter and energy through the system. These networks can help researchers to understand how cells regulate their metabolism in response to changes in their environment, and how disruptions to these networks can lead to disease.
Some common examples of metabolic pathways include glycolysis, the citric acid cycle (also known as the Krebs cycle), and the pentose phosphate pathway. Each of these pathways plays a critical role in maintaining cellular homeostasis and providing energy for cellular functions.
Gas Chromatography-Mass Spectrometry (GC-MS) is a powerful analytical technique that combines the separating power of gas chromatography with the identification capabilities of mass spectrometry. This method is used to separate, identify, and quantify different components in complex mixtures.
In GC-MS, the mixture is first vaporized and carried through a long, narrow column by an inert gas (carrier gas). The various components in the mixture interact differently with the stationary phase inside the column, leading to their separation based on their partition coefficients between the mobile and stationary phases. As each component elutes from the column, it is then introduced into the mass spectrometer for analysis.
The mass spectrometer ionizes the sample, breaks it down into smaller fragments, and measures the mass-to-charge ratio of these fragments. This information is used to generate a mass spectrum, which serves as a unique "fingerprint" for each compound. By comparing the generated mass spectra with reference libraries or known standards, analysts can identify and quantify the components present in the original mixture.
GC-MS has wide applications in various fields such as forensics, environmental analysis, drug testing, and research laboratories due to its high sensitivity, specificity, and ability to analyze volatile and semi-volatile compounds.
Principal Component Analysis (PCA) is not a medical term, but a statistical technique that is used in various fields including bioinformatics and medicine. It is a method used to identify patterns in high-dimensional data by reducing the dimensionality of the data while retaining most of the variation in the dataset.
In medical or biological research, PCA may be used to analyze large datasets such as gene expression data or medical imaging data. By applying PCA, researchers can identify the principal components, which are linear combinations of the original variables that explain the maximum amount of variance in the data. These principal components can then be used for further analysis, visualization, and interpretation of the data.
PCA is a widely used technique in data analysis and has applications in various fields such as genomics, proteomics, metabolomics, and medical imaging. It helps researchers to identify patterns and relationships in complex datasets, which can lead to new insights and discoveries in medical research.
Magnetic Resonance Spectroscopy (MRS) is a non-invasive diagnostic technique that provides information about the biochemical composition of tissues, including their metabolic state. It is often used in conjunction with Magnetic Resonance Imaging (MRI) to analyze various metabolites within body tissues, such as the brain, heart, liver, and muscles.
During MRS, a strong magnetic field, radio waves, and a computer are used to produce detailed images and data about the concentration of specific metabolites in the targeted tissue or organ. This technique can help detect abnormalities related to energy metabolism, neurotransmitter levels, pH balance, and other biochemical processes, which can be useful for diagnosing and monitoring various medical conditions, including cancer, neurological disorders, and metabolic diseases.
There are different types of MRS, such as Proton (^1^H) MRS, Phosphorus-31 (^31^P) MRS, and Carbon-13 (^13^C) MRS, each focusing on specific elements or metabolites within the body. The choice of MRS technique depends on the clinical question being addressed and the type of information needed for diagnosis or monitoring purposes.
Systems Biology is a multidisciplinary approach to studying biological systems that involves the integration of various scientific disciplines such as biology, mathematics, physics, computer science, and engineering. It aims to understand how biological components, including genes, proteins, metabolites, cells, and organs, interact with each other within the context of the whole system. This approach emphasizes the emergent properties of biological systems that cannot be explained by studying individual components alone. Systems biology often involves the use of computational models to simulate and predict the behavior of complex biological systems and to design experiments for testing hypotheses about their functioning. The ultimate goal of systems biology is to develop a more comprehensive understanding of how biological systems function, with applications in fields such as medicine, agriculture, and bioengineering.
Proteomics is the large-scale study and analysis of proteins, including their structures, functions, interactions, modifications, and abundance, in a given cell, tissue, or organism. It involves the identification and quantification of all expressed proteins in a biological sample, as well as the characterization of post-translational modifications, protein-protein interactions, and functional pathways. Proteomics can provide valuable insights into various biological processes, diseases, and drug responses, and has applications in basic research, biomedicine, and clinical diagnostics. The field combines various techniques from molecular biology, chemistry, physics, and bioinformatics to study proteins at a systems level.
I am not aware of a widely accepted medical definition for the term "software," as it is more commonly used in the context of computer science and technology. Software refers to programs, data, and instructions that are used by computers to perform various tasks. It does not have direct relevance to medical fields such as anatomy, physiology, or clinical practice. If you have any questions related to medicine or healthcare, I would be happy to try to help with those instead!
A chemical database is a collection of data that stores and organizes information about various chemical compounds and their properties. These databases can contain a wide range of information, including the structures of the molecules, physical and chemical properties, biological activities, hazards, and safety data. They may also include literature references, spectral data, and other relevant information. Chemical databases are used in many fields, including chemistry, biology, pharmacology, toxicology, and materials science. Some examples of chemical databases include PubChem, ChemSpider, and the Protein Data Bank.
Tandem mass spectrometry (MS/MS) is a technique used to identify and quantify specific molecules, such as proteins or metabolites, within complex mixtures. This method uses two or more sequential mass analyzers to first separate ions based on their mass-to-charge ratio and then further fragment the selected ions into smaller pieces for additional analysis. The fragmentation patterns generated in MS/MS experiments can be used to determine the structure and identity of the original molecule, making it a powerful tool in various fields such as proteomics, metabolomics, and forensic science.
A biological marker, often referred to as a biomarker, is a measurable indicator that reflects the presence or severity of a disease state, or a response to a therapeutic intervention. Biomarkers can be found in various materials such as blood, tissues, or bodily fluids, and they can take many forms, including molecular, histologic, radiographic, or physiological measurements.
In the context of medical research and clinical practice, biomarkers are used for a variety of purposes, such as:
1. Diagnosis: Biomarkers can help diagnose a disease by indicating the presence or absence of a particular condition. For example, prostate-specific antigen (PSA) is a biomarker used to detect prostate cancer.
2. Monitoring: Biomarkers can be used to monitor the progression or regression of a disease over time. For instance, hemoglobin A1c (HbA1c) levels are monitored in diabetes patients to assess long-term blood glucose control.
3. Predicting: Biomarkers can help predict the likelihood of developing a particular disease or the risk of a negative outcome. For example, the presence of certain genetic mutations can indicate an increased risk for breast cancer.
4. Response to treatment: Biomarkers can be used to evaluate the effectiveness of a specific treatment by measuring changes in the biomarker levels before and after the intervention. This is particularly useful in personalized medicine, where treatments are tailored to individual patients based on their unique biomarker profiles.
It's important to note that for a biomarker to be considered clinically valid and useful, it must undergo rigorous validation through well-designed studies, including demonstrating sensitivity, specificity, reproducibility, and clinical relevance.
Urinalysis is a medical examination and analysis of urine. It's used to detect and manage a wide range of disorders, such as diabetes, kidney disease, and liver problems. A urinalysis can also help monitor medications and drug compliance. The test typically involves checking the color, clarity, and specific gravity (concentration) of urine. It may also include chemical analysis to detect substances like glucose, protein, blood, and white blood cells, which could indicate various medical conditions. In some cases, a microscopic examination is performed to identify any abnormal cells, casts, or crystals present in the urine.
Nutrigenomics is a branch of nutrition research that studies the relationship between genes, nutrition, and health. It focuses on understanding how individual genetic variations can affect the way we respond to nutrients in our diet and how these responses may contribute to the risk of developing certain diseases. By examining these gene-diet interactions, nutrigenomics aims to provide personalized nutrition recommendations that can help improve overall health, prevent chronic diseases, and optimize athletic performance.
In simpler terms, nutrigenomics explores how our genes influence our nutritional needs and how our dietary choices can impact the expression of our genes. This knowledge can be used to develop targeted nutritional strategies for individuals based on their unique genetic profiles.
Mass spectrometry with electrospray ionization (ESI-MS) is an analytical technique used to identify and quantify chemical species in a sample based on the mass-to-charge ratio of charged particles. In ESI-MS, analytes are ionized through the use of an electrospray, where a liquid sample is introduced through a metal capillary needle at high voltage, creating an aerosol of charged droplets. As the solvent evaporates, the analyte molecules become charged and can be directed into a mass spectrometer for analysis.
ESI-MS is particularly useful for the analysis of large biomolecules such as proteins, peptides, and nucleic acids, due to its ability to gently ionize these species without fragmentation. The technique provides information about the molecular weight and charge state of the analytes, which can be used to infer their identity and structure. Additionally, ESI-MS can be interfaced with separation techniques such as liquid chromatography (LC) for further purification and characterization of complex samples.
Biological psychiatry is a branch of medicine that aims to understand and treat mental disorders by studying the biological mechanisms underlying behavior, cognition, and emotion. This can include the study of genetics, neurochemistry, brain structure and function, and other physiological processes that may contribute to the development and expression of mental illnesses.
Biological psychiatrists use a variety of approaches to understand and treat mental disorders, including psychopharmacology (the use of medications to treat psychiatric symptoms), neurostimulation techniques (such as electroconvulsive therapy or transcranial magnetic stimulation), and behavioral interventions (such as cognitive-behavioral therapy).
The ultimate goal of biological psychiatry is to develop more effective treatments for mental illnesses by gaining a deeper understanding of the underlying biological mechanisms that contribute to their development and expression.
Least-Squares Analysis is not a medical term, but rather a statistical method that is used in various fields including medicine. It is a way to find the best fit line or curve for a set of data points by minimizing the sum of the squared distances between the observed data points and the fitted line or curve. This method is often used in medical research to analyze data, such as fitting a regression line to a set of data points to make predictions or identify trends. The goal is to find the line or curve that most closely represents the pattern of the data, which can help researchers understand relationships between variables and make more informed decisions based on their analysis.
Genomics is the scientific study of genes and their functions. It involves the sequencing and analysis of an organism's genome, which is its complete set of DNA, including all of its genes. Genomics also includes the study of how genes interact with each other and with the environment. This field of study can provide important insights into the genetic basis of diseases and can lead to the development of new diagnostic tools and treatments.
A factual database in the medical context is a collection of organized and structured data that contains verified and accurate information related to medicine, healthcare, or health sciences. These databases serve as reliable resources for various stakeholders, including healthcare professionals, researchers, students, and patients, to access evidence-based information for making informed decisions and enhancing knowledge.
Examples of factual medical databases include:
1. PubMed: A comprehensive database of biomedical literature maintained by the US National Library of Medicine (NLM). It contains citations and abstracts from life sciences journals, books, and conference proceedings.
2. MEDLINE: A subset of PubMed, MEDLINE focuses on high-quality, peer-reviewed articles related to biomedicine and health. It is the primary component of the NLM's database and serves as a critical resource for healthcare professionals and researchers worldwide.
3. Cochrane Library: A collection of systematic reviews and meta-analyses focused on evidence-based medicine. The library aims to provide unbiased, high-quality information to support clinical decision-making and improve patient outcomes.
4. OVID: A platform that offers access to various medical and healthcare databases, including MEDLINE, Embase, and PsycINFO. It facilitates the search and retrieval of relevant literature for researchers, clinicians, and students.
5. ClinicalTrials.gov: A registry and results database of publicly and privately supported clinical studies conducted around the world. The platform aims to increase transparency and accessibility of clinical trial data for healthcare professionals, researchers, and patients.
6. UpToDate: An evidence-based, physician-authored clinical decision support resource that provides information on diagnosis, treatment, and prevention of medical conditions. It serves as a point-of-care tool for healthcare professionals to make informed decisions and improve patient care.
7. TRIP Database: A search engine designed to facilitate evidence-based medicine by providing quick access to high-quality resources, including systematic reviews, clinical guidelines, and practice recommendations.
8. National Guideline Clearinghouse (NGC): A database of evidence-based clinical practice guidelines and related documents developed through a rigorous review process. The NGC aims to provide clinicians, healthcare providers, and policymakers with reliable guidance for patient care.
9. DrugBank: A comprehensive, freely accessible online database containing detailed information about drugs, their mechanisms, interactions, and targets. It serves as a valuable resource for researchers, healthcare professionals, and students in the field of pharmacology and drug discovery.
10. Genetic Testing Registry (GTR): A database that provides centralized information about genetic tests, test developers, laboratories offering tests, and clinical validity and utility of genetic tests. It serves as a resource for healthcare professionals, researchers, and patients to make informed decisions regarding genetic testing.
Computational biology is a branch of biology that uses mathematical and computational methods to study biological data, models, and processes. It involves the development and application of algorithms, statistical models, and computational approaches to analyze and interpret large-scale molecular and phenotypic data from genomics, transcriptomics, proteomics, metabolomics, and other high-throughput technologies. The goal is to gain insights into biological systems and processes, develop predictive models, and inform experimental design and hypothesis testing in the life sciences. Computational biology encompasses a wide range of disciplines, including bioinformatics, systems biology, computational genomics, network biology, and mathematical modeling of biological systems.
Discriminant analysis is a statistical method used for classifying observations or individuals into distinct categories or groups based on multiple predictor variables. It is commonly used in medical research to help diagnose or predict the presence or absence of a particular condition or disease.
In discriminant analysis, a linear combination of the predictor variables is created, and the resulting function is used to determine the group membership of each observation. The function is derived from the means and variances of the predictor variables for each group, with the goal of maximizing the separation between the groups while minimizing the overlap.
There are two types of discriminant analysis:
1. Linear Discriminant Analysis (LDA): This method assumes that the predictor variables are normally distributed and have equal variances within each group. LDA is used when there are two or more groups to be distinguished.
2. Quadratic Discriminant Analysis (QDA): This method does not assume equal variances within each group, allowing for more flexibility in modeling the distribution of predictor variables. QDA is used when there are two or more groups to be distinguished.
Discriminant analysis can be useful in medical research for developing diagnostic models that can accurately classify patients based on a set of clinical or laboratory measures. It can also be used to identify which predictor variables are most important in distinguishing between different groups, providing insights into the underlying biological mechanisms of disease.
The proteome is the entire set of proteins produced or present in an organism, system, organ, or cell at a certain time under specific conditions. It is a dynamic collection of protein species that changes over time, responding to various internal and external stimuli such as disease, stress, or environmental factors. The study of the proteome, known as proteomics, involves the identification and quantification of these protein components and their post-translational modifications, providing valuable insights into biological processes, functional pathways, and disease mechanisms.
Isotope labeling is a scientific technique used in the field of medicine, particularly in molecular biology, chemistry, and pharmacology. It involves replacing one or more atoms in a molecule with a radioactive or stable isotope of the same element. This modified molecule can then be traced and analyzed to study its structure, function, metabolism, or interaction with other molecules within biological systems.
Radioisotope labeling uses unstable radioactive isotopes that emit radiation, allowing for detection and quantification of the labeled molecule using various imaging techniques, such as positron emission tomography (PET) or single-photon emission computed tomography (SPECT). This approach is particularly useful in tracking the distribution and metabolism of drugs, hormones, or other biomolecules in living organisms.
Stable isotope labeling, on the other hand, employs non-radioactive isotopes that do not emit radiation. These isotopes have different atomic masses compared to their natural counterparts and can be detected using mass spectrometry. Stable isotope labeling is often used in metabolic studies, protein turnover analysis, or for identifying the origin of specific molecules within complex biological samples.
In summary, isotope labeling is a versatile tool in medical research that enables researchers to investigate various aspects of molecular behavior and interactions within biological systems.
I'm sorry for any confusion, but "Internet" is a term that pertains to the global network of interconnected computers and servers that enable the transmission and reception of data via the internet protocol (IP). It is not a medical term and does not have a specific medical definition. If you have any questions related to medicine or health, I'd be happy to try to help answer them for you!