Gene Knockout Techniques
Mice, Knockout
Mice, Inbred C57BL
Gene Targeting
Gene Deletion
Metabolic Engineering
Disease Models, Animal
Phenotype
Mice, Transgenic
Genetic Engineering
Integrases
Genes, Essential
Molecular Sequence Data
Signal Transduction
RNA, Messenger
Mutation
Gene Expression Regulation
Cells, Cultured
Encyclopedias as Topic
Cobblestone Lissencephaly
Gene Knock-In Techniques
Probabilistic protein function prediction from heterogeneous genome-wide data. (1/2316)
Dramatic improvements in high throughput sequencing technologies have led to a staggering growth in the number of predicted genes. However, a large fraction of these newly discovered genes do not have a functional assignment. Fortunately, a variety of novel high-throughput genome-wide functional screening technologies provide important clues that shed light on gene function. The integration of heterogeneous data to predict protein function has been shown to improve the accuracy of automated gene annotation systems. In this paper, we propose and evaluate a probabilistic approach for protein function prediction that integrates protein-protein interaction (PPI) data, gene expression data, protein motif information, mutant phenotype data, and protein localization data. First, functional linkage graphs are constructed from PPI data and gene expression data, in which an edge between nodes (proteins) represents evidence for functional similarity. The assumption here is that graph neighbors are more likely to share protein function, compared to proteins that are not neighbors. The functional linkage graph model is then used in concert with protein domain, mutant phenotype and protein localization data to produce a functional prediction. Our method is applied to the functional prediction of Saccharomyces cerevisiae genes, using Gene Ontology (GO) terms as the basis of our annotation. In a cross validation study we show that the integrated model increases recall by 18%, compared to using PPI data alone at the 50% precision. We also show that the integrated predictor is significantly better than each individual predictor. However, the observed improvement vs. PPI depends on both the new source of data and the functional category to be predicted. Surprisingly, in some contexts integration hurts overall prediction accuracy. Lastly, we provide a comprehensive assignment of putative GO terms to 463 proteins that currently have no assigned function. (+info)What do we know about the role of gliotoxin in the pathobiology of Aspergillus fumigatus? (2/2316)
(+info)Membrane water permeability related to antigen-presenting function of dendritic cells. (3/2316)
(+info)A novel way to purify recombinant baculoviruses by using bacmid. (4/2316)
(+info)Targeted knockout of the mouse betaB2-crystallin gene (Crybb2) induces age-related cataract. (5/2316)
(+info)Mist1 regulates pancreatic acinar cell proliferation through p21 CIP1/WAF1. (6/2316)
(+info)Genome-scale model for Clostridium acetobutylicum: Part I. Metabolic network resolution and analysis. (7/2316)
(+info)Fatty acid synthase inhibitors modulate energy balance via mammalian target of rapamycin complex 1 signaling in the central nervous system. (8/2316)
(+info)"Gene knockout techniques" refer to a group of biomedical research methods used in genetics and molecular biology to study the function of specific genes in an organism. These techniques involve introducing a deliberate, controlled genetic modification that results in the inactivation or "knockout" of a particular gene. This is typically achieved through various methods such as homologous recombination, where a modified version of the gene with inserted mutations is introduced into the organism's genome, replacing the original functional gene. The resulting organism, known as a "knockout mouse" or other model organisms, lacks the function of the targeted gene and can be used to study its role in biological processes, disease development, and potential therapeutic interventions.
A "knockout" mouse is a genetically engineered mouse in which one or more genes have been deleted or "knocked out" using molecular biology techniques. This allows researchers to study the function of specific genes and their role in various biological processes, as well as potential associations with human diseases. The mice are generated by introducing targeted DNA modifications into embryonic stem cells, which are then used to create a live animal. Knockout mice have been widely used in biomedical research to investigate gene function, disease mechanisms, and potential therapeutic targets.
C57BL/6 (C57 Black 6) is an inbred strain of laboratory mouse that is widely used in biomedical research. The term "inbred" refers to a strain of animals where matings have been carried out between siblings or other closely related individuals for many generations, resulting in a population that is highly homozygous at most genetic loci.
The C57BL/6 strain was established in 1920 by crossing a female mouse from the dilute brown (DBA) strain with a male mouse from the black strain. The resulting offspring were then interbred for many generations to create the inbred C57BL/6 strain.
C57BL/6 mice are known for their robust health, longevity, and ease of handling, making them a popular choice for researchers. They have been used in a wide range of biomedical research areas, including studies of cancer, immunology, neuroscience, cardiovascular disease, and metabolism.
One of the most notable features of the C57BL/6 strain is its sensitivity to certain genetic modifications, such as the introduction of mutations that lead to obesity or impaired glucose tolerance. This has made it a valuable tool for studying the genetic basis of complex diseases and traits.
Overall, the C57BL/6 inbred mouse strain is an important model organism in biomedical research, providing a valuable resource for understanding the genetic and molecular mechanisms underlying human health and disease.
Gene targeting is a research technique in molecular biology used to precisely modify specific genes within the genome of an organism. This technique allows scientists to study gene function by creating targeted genetic changes, such as insertions, deletions, or mutations, in a specific gene of interest. The process typically involves the use of engineered nucleases, such as CRISPR-Cas9 or TALENs, to introduce double-stranded breaks at desired locations within the genome. These breaks are then repaired by the cell's own DNA repair machinery, often leading to the incorporation of designed changes in the targeted gene. Gene targeting is a powerful tool for understanding gene function and has wide-ranging applications in basic research, agriculture, and therapeutic development.
Gene deletion is a type of mutation where a segment of DNA, containing one or more genes, is permanently lost or removed from a chromosome. This can occur due to various genetic mechanisms such as homologous recombination, non-homologous end joining, or other types of genomic rearrangements.
The deletion of a gene can have varying effects on the organism, depending on the function of the deleted gene and its importance for normal physiological processes. If the deleted gene is essential for survival, the deletion may result in embryonic lethality or developmental abnormalities. However, if the gene is non-essential or has redundant functions, the deletion may not have any noticeable effects on the organism's phenotype.
Gene deletions can also be used as a tool in genetic research to study the function of specific genes and their role in various biological processes. For example, researchers may use gene deletion techniques to create genetically modified animal models to investigate the impact of gene deletion on disease progression or development.
Metabolic engineering is a branch of biotechnology that involves the modification and manipulation of metabolic pathways in organisms to enhance their production of specific metabolites or to alter their flow of energy and carbon. This field combines principles from genetics, molecular biology, biochemistry, and chemical engineering to design and construct novel metabolic pathways or modify existing ones with the goal of optimizing the production of valuable compounds or improving the properties of organisms for various applications.
Examples of metabolic engineering include the modification of microorganisms to produce biofuels, pharmaceuticals, or industrial chemicals; the enhancement of crop yields and nutritional value in agriculture; and the development of novel bioremediation strategies for environmental pollution control. The ultimate goal of metabolic engineering is to create organisms that can efficiently and sustainably produce valuable products while minimizing waste and reducing the impact on the environment.
Animal disease models are specialized animals, typically rodents such as mice or rats, that have been genetically engineered or exposed to certain conditions to develop symptoms and physiological changes similar to those seen in human diseases. These models are used in medical research to study the pathophysiology of diseases, identify potential therapeutic targets, test drug efficacy and safety, and understand disease mechanisms.
The genetic modifications can include knockout or knock-in mutations, transgenic expression of specific genes, or RNA interference techniques. The animals may also be exposed to environmental factors such as chemicals, radiation, or infectious agents to induce the disease state.
Examples of animal disease models include:
1. Mouse models of cancer: Genetically engineered mice that develop various types of tumors, allowing researchers to study cancer initiation, progression, and metastasis.
2. Alzheimer's disease models: Transgenic mice expressing mutant human genes associated with Alzheimer's disease, which exhibit amyloid plaque formation and cognitive decline.
3. Diabetes models: Obese and diabetic mouse strains like the NOD (non-obese diabetic) or db/db mice, used to study the development of type 1 and type 2 diabetes, respectively.
4. Cardiovascular disease models: Atherosclerosis-prone mice, such as ApoE-deficient or LDLR-deficient mice, that develop plaque buildup in their arteries when fed a high-fat diet.
5. Inflammatory bowel disease models: Mice with genetic mutations affecting intestinal barrier function and immune response, such as IL-10 knockout or SAMP1/YitFc mice, which develop colitis.
Animal disease models are essential tools in preclinical research, but it is important to recognize their limitations. Differences between species can affect the translatability of results from animal studies to human patients. Therefore, researchers must carefully consider the choice of model and interpret findings cautiously when applying them to human diseases.
A phenotype is the physical or biochemical expression of an organism's genes, or the observable traits and characteristics resulting from the interaction of its genetic constitution (genotype) with environmental factors. These characteristics can include appearance, development, behavior, and resistance to disease, among others. Phenotypes can vary widely, even among individuals with identical genotypes, due to differences in environmental influences, gene expression, and genetic interactions.
Transgenic mice are genetically modified rodents that have incorporated foreign DNA (exogenous DNA) into their own genome. This is typically done through the use of recombinant DNA technology, where a specific gene or genetic sequence of interest is isolated and then introduced into the mouse embryo. The resulting transgenic mice can then express the protein encoded by the foreign gene, allowing researchers to study its function in a living organism.
The process of creating transgenic mice usually involves microinjecting the exogenous DNA into the pronucleus of a fertilized egg, which is then implanted into a surrogate mother. The offspring that result from this procedure are screened for the presence of the foreign DNA, and those that carry the desired genetic modification are used to establish a transgenic mouse line.
Transgenic mice have been widely used in biomedical research to model human diseases, study gene function, and test new therapies. They provide a valuable tool for understanding complex biological processes and developing new treatments for a variety of medical conditions.
Genetic engineering, also known as genetic modification, is a scientific process where the DNA or genetic material of an organism is manipulated to bring about a change in its characteristics. This is typically done by inserting specific genes into the organism's genome using various molecular biology techniques. These new genes may come from the same species (cisgenesis) or a different species (transgenesis). The goal is to produce a desired trait, such as resistance to pests, improved nutritional content, or increased productivity. It's widely used in research, medicine, and agriculture. However, it's important to note that the use of genetically engineered organisms can raise ethical, environmental, and health concerns.
Integrases are enzymes that are responsible for the integration of genetic material into a host's DNA. In particular, integrases play a crucial role in the life cycle of retroviruses, such as HIV (Human Immunodeficiency Virus). These viruses have an RNA genome, which must be reverse-transcribed into DNA before it can be integrated into the host's chromosomal DNA.
The integrase enzyme, encoded by the virus's pol gene, is responsible for this critical step in the retroviral replication cycle. It mediates the cutting and pasting of the viral cDNA into a specific site within the host cell's genome, leading to the formation of a provirus. This provirus can then be transcribed and translated by the host cell's machinery, resulting in the production of new virus particles.
Integrase inhibitors are an important class of antiretroviral drugs used in the treatment of HIV infection. They work by blocking the activity of the integrase enzyme, thereby preventing the integration of viral DNA into the host genome and halting the replication of the virus.
"Essential genes" refer to a category of genes that are vital for the survival or reproduction of an organism. They encode proteins that are necessary for fundamental biological processes, such as DNA replication, transcription, translation, and cell division. Mutations in essential genes often result in lethality or infertility, making them indispensable for the organism's existence. The identification and study of essential genes can provide valuable insights into the basic mechanisms of life and disease.
Molecular sequence data refers to the specific arrangement of molecules, most commonly nucleotides in DNA or RNA, or amino acids in proteins, that make up a biological macromolecule. This data is generated through laboratory techniques such as sequencing, and provides information about the exact order of the constituent molecules. This data is crucial in various fields of biology, including genetics, evolution, and molecular biology, allowing for comparisons between different organisms, identification of genetic variations, and studies of gene function and regulation.
Signal transduction is the process by which a cell converts an extracellular signal, such as a hormone or neurotransmitter, into an intracellular response. This involves a series of molecular events that transmit the signal from the cell surface to the interior of the cell, ultimately resulting in changes in gene expression, protein activity, or metabolism.
The process typically begins with the binding of the extracellular signal to a receptor located on the cell membrane. This binding event activates the receptor, which then triggers a cascade of intracellular signaling molecules, such as second messengers, protein kinases, and ion channels. These molecules amplify and propagate the signal, ultimately leading to the activation or inhibition of specific cellular responses.
Signal transduction pathways are highly regulated and can be modulated by various factors, including other signaling molecules, post-translational modifications, and feedback mechanisms. Dysregulation of these pathways has been implicated in a variety of diseases, including cancer, diabetes, and neurological disorders.
I apologize for any confusion, but "Haloferax volcanii" is not a medical term or concept. It is actually a species of archaea (single-celled microorganisms) that is commonly found in extremely salty environments, such as salt lakes and salt mines. The name "Haloferax volcanii" refers to the fact that this organism is halophilic (salt-loving) and was first isolated from a volcanic site.
Here is a brief scientific definition of "Haloferax volcanii":
Haloferax volcanii is a species of halophilic archaea belonging to the family Haloferacaceae. It is a rod-shaped, motile organism that is commonly found in hypersaline environments such as salt lakes and salt mines. The optimum growth temperature for H. volcanii is around 45°C, and it can tolerate a wide range of salinities (up to 3 M NaCl). It has a relatively large genome (around 4 Mb) that contains many genes involved in DNA repair and stress response, making it well-adapted to life in extreme environments. H. volcanii is also known for its ability to form stable triparental mating structures, which are used in genetic studies of archaea.
Messenger RNA (mRNA) is a type of RNA (ribonucleic acid) that carries genetic information copied from DNA in the form of a series of three-base code "words," each of which specifies a particular amino acid. This information is used by the cell's machinery to construct proteins, a process known as translation. After being transcribed from DNA, mRNA travels out of the nucleus to the ribosomes in the cytoplasm where protein synthesis occurs. Once the protein has been synthesized, the mRNA may be degraded and recycled. Post-transcriptional modifications can also occur to mRNA, such as alternative splicing and addition of a 5' cap and a poly(A) tail, which can affect its stability, localization, and translation efficiency.
A mutation is a permanent change in the DNA sequence of an organism's genome. Mutations can occur spontaneously or be caused by environmental factors such as exposure to radiation, chemicals, or viruses. They may have various effects on the organism, ranging from benign to harmful, depending on where they occur and whether they alter the function of essential proteins. In some cases, mutations can increase an individual's susceptibility to certain diseases or disorders, while in others, they may confer a survival advantage. Mutations are the driving force behind evolution, as they introduce new genetic variability into populations, which can then be acted upon by natural selection.
'Gene expression regulation' refers to the processes that control whether, when, and where a particular gene is expressed, meaning the production of a specific protein or functional RNA encoded by that gene. This complex mechanism can be influenced by various factors such as transcription factors, chromatin remodeling, DNA methylation, non-coding RNAs, and post-transcriptional modifications, among others. Proper regulation of gene expression is crucial for normal cellular function, development, and maintaining homeostasis in living organisms. Dysregulation of gene expression can lead to various diseases, including cancer and genetic disorders.
"Cells, cultured" is a medical term that refers to cells that have been removed from an organism and grown in controlled laboratory conditions outside of the body. This process is called cell culture and it allows scientists to study cells in a more controlled and accessible environment than they would have inside the body. Cultured cells can be derived from a variety of sources, including tissues, organs, or fluids from humans, animals, or cell lines that have been previously established in the laboratory.
Cell culture involves several steps, including isolation of the cells from the tissue, purification and characterization of the cells, and maintenance of the cells in appropriate growth conditions. The cells are typically grown in specialized media that contain nutrients, growth factors, and other components necessary for their survival and proliferation. Cultured cells can be used for a variety of purposes, including basic research, drug development and testing, and production of biological products such as vaccines and gene therapies.
It is important to note that cultured cells may behave differently than they do in the body, and results obtained from cell culture studies may not always translate directly to human physiology or disease. Therefore, it is essential to validate findings from cell culture experiments using additional models and ultimately in clinical trials involving human subjects.
'Abbreviations as Topic' in medical terms refers to the use and interpretation of abbreviated words or phrases that are commonly used in the field of medicine. These abbreviations can represent various concepts, such as medical conditions, treatments, procedures, diagnostic tests, and more.
Medical abbreviations are often used in clinical documentation, including patient records, progress notes, orders, and medication administration records. They help healthcare professionals communicate efficiently and effectively, reducing the need for lengthy descriptions and improving clarity in written communication.
However, medical abbreviations can also be a source of confusion and error if they are misinterpreted or used incorrectly. Therefore, it is essential to use standardized abbreviations that are widely recognized and accepted within the medical community. Additionally, healthcare professionals should always ensure that their use of abbreviations does not compromise patient safety or lead to misunderstandings in patient care.
Examples of commonly used medical abbreviations include:
* PT: Physical Therapy
* BP: Blood Pressure
* HR: Heart Rate
* Rx: Prescription
* NPO: Nothing by Mouth
* IV: Intravenous
* IM: Intramuscular
* COPD: Chronic Obstructive Pulmonary Disease
* MI: Myocardial Infarction (Heart Attack)
* Dx: Diagnosis
It is important to note that some medical abbreviations can have multiple meanings, and their interpretation may depend on the context in which they are used. Therefore, it is essential to use caution when interpreting medical abbreviations and seek clarification if necessary to ensure accurate communication and patient care.
An encyclopedia is a comprehensive reference work containing articles on various topics, usually arranged in alphabetical order. In the context of medicine, a medical encyclopedia is a collection of articles that provide information about a wide range of medical topics, including diseases and conditions, treatments, tests, procedures, and anatomy and physiology. Medical encyclopedias may be published in print or electronic formats and are often used as a starting point for researching medical topics. They can provide reliable and accurate information on medical subjects, making them useful resources for healthcare professionals, students, and patients alike. Some well-known examples of medical encyclopedias include the Merck Manual and the Stedman's Medical Dictionary.
Cobblestone lissencephaly is a type of brain malformation characterized by a smooth brain surface with no normal convolutions (gyri) or indentations (sulci). Instead, the brain surface has a pebbly or "cobblestone" appearance. This condition is caused by abnormal migration of nerve cells during fetal development.
In cobblestone lissencephaly, the nerve cells that should form the outer layer of the brain (the cerebral cortex) fail to migrate properly and instead accumulate in thick layers beneath the surface of the brain. This can lead to severe intellectual disability, seizures, muscle spasticity, vision problems, and other neurological issues.
Cobblestone lissencephaly is often associated with genetic disorders such as Walker-Warburg syndrome, Muscle-eye-brain disease, and Fukuyama congenital muscular dystrophy. It can also be seen in some cases of congenital infection or exposure to environmental toxins during pregnancy.
"Gene knock-in techniques" refer to a group of genetic engineering methods used in molecular biology to precisely insert or "knock-in" a specific gene or DNA sequence into a specific location within the genome of an organism. This is typically done using recombinant DNA technology and embryonic stem (ES) cells, although other techniques such as CRISPR-Cas9 can also be used.
The goal of gene knock-in techniques is to create a stable and heritable genetic modification in which the introduced gene is expressed at a normal level and in the correct spatial and temporal pattern. This allows researchers to study the function of individual genes, investigate gene regulation, model human diseases, and develop potential therapies for genetic disorders.
In general, gene knock-in techniques involve several steps: first, a targeting vector is constructed that contains the desired DNA sequence flanked by homologous regions that match the genomic locus where the insertion will occur. This vector is then introduced into ES cells, which are cultured and allowed to undergo homologous recombination with the endogenous genome. The resulting modified ES cells are selected for and characterized to confirm the correct integration of the DNA sequence. Finally, the modified ES cells are used to generate chimeric animals, which are then bred to produce offspring that carry the genetic modification in their germline.
Overall, gene knock-in techniques provide a powerful tool for studying gene function and developing new therapies for genetic diseases.
MedlinePlus is not a medical term, but rather a consumer health website that provides high-quality, accurate, and reliable health information, written in easy-to-understand language. It is produced by the U.S. National Library of Medicine, the world's largest medical library, and is widely recognized as a trusted source of health information.
MedlinePlus offers information on various health topics, including conditions, diseases, tests, treatments, and wellness. It also provides access to drug information, medical dictionary, and encyclopedia, as well as links to clinical trials, medical news, and patient organizations. The website is available in both English and Spanish and can be accessed for free.
Gene knockout
Conditional gene knockout
Gene targeting
Genetic ablation
Knockout rat
HEY2
Ocular albinism late onset sensorineural deafness
Double knockout
Behavioural genetics
Pesticide research
List of unusual biological names
Viral vector
PSE meat
Transposon sequencing
Guide RNA
Lipid signaling
Physcomitrella patens
Gene knock-in
Rat Genome Database
Oncogenomics
LEAPER gene editing
Homologous recombination
Cell fate determination
RNA silencing
Gene therapy
Functional genomics
Nix (gene)
Molecular biology
Knockout mouse
Richard Palmiter
Gene Knockout Techniques | Profiles RNS
Gene knockout - Wikipedia
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and rapidly determine all the DNA sequences in the genome that regulate the expression of a specific gene. » FINCHANNEL
Mice17
- BAd-CRISPR: Inducible gene knockout in interscapular brown adipose tissue of adult mice. (uchicago.edu)
- In mice, gene knockouts are commonly used to study the function of specific genes in development, physiology, and cancer research. (wikipedia.org)
- For example, gene knockouts in mice have been used to study the role of specific genes in cancer, neurological disorders, immune disorders, and metabolic disorders. (wikipedia.org)
- Knockout mice are commonly used to study genes with human equivalents that may have significance for disease. (wikipedia.org)
- A recent example of a study using knockout mice is an investigation of the roles of Xirp proteins in Sudden Unexplained Nocturnal Death Syndrome (SUNDS) and Brugada Syndrome in the Chinese Han Population by Cheng, et al. (wikipedia.org)
- This review focuses on recent findings using genetically modified mice (gene knockouts and transgenic 'green acrosome' mice) to study the effects of eliminating acrosomal matrix-associated proteins on sperm structure and function. (nih.gov)
- these mice permit the role of specific individual genes in development, in immune response studies and also provide animal models for evaluation of various therapeutic regiments. (assignmenthelp.net)
- He could then use these mice to investigate which genes were responsible for that charact. (yourgenome.org)
- Transgenic mice are extremely useful for scientists studying gene function. (yourgenome.org)
- Knockout mice display a tendency to intestinal inflammation. (guidetopharmacology.org)
- In an infection-induced colitis model, knockout mice were more prone to tissue damage and inflammatory cytokine expression. (guidetopharmacology.org)
- Transgenic mice that were created that had a mutation in the gene which codes for the transcription factor (NGFIB). (freeonlineresearchpapers.com)
- It was hypothesized that a growth hormone gene would speed up and increase overall growth of the mice. (freeonlineresearchpapers.com)
- The researchers will also genetically knock out specific mitochondrial genes to better define how certain mitochondrial properties uniquely impact social memory and behavior in mice. (neurosciencenews.com)
- Here, we used myeloperoxidase knockout B6.129X1-MPO (MPO k/o) mice and showed that oxidation and clearance of single walled carbon nanotubes (SWCNT) from the lungs of these animals after pharyngeal aspiration was markedly less effective whereas the inflammatory response was more robust than in wild-type C57Bl/6 mice. (cdc.gov)
- Hepatic and pulmonary microsomal benzene metabolism in CYP2E1 knockout mice. (cdc.gov)
- In an animal model of PFIC3, Abcb4 (Mdr2) knockout mice cannot excrete phospholipid into bile and develop progressive liver disease characterized by portal inflammation, proliferation of bile ducts, and fibrosis. (medscape.com)
Proteins7
- We demonstrated that in an S. aureus srtA gene knockout strain, srtA-dependent cell-surface-associated proteins were detectable yet not covalently linked to the PG layer. (eur.nl)
- They destroy the RNA before it can make proteins - say, in a matter of a few hours - and, in doing so, destroy the gene editing attempt. (eurekalert.org)
- Latest achievements involve production of medically important proteins like anti-clotting factors through expression of the gene in lactating cows, goats and pigs. (freeonlineresearchpapers.com)
- Reporter genes often produce proteins that glow in green or blue. (snexplores.org)
- Using a variety of techniques including animal models of ventricular hypertrophy, gene knockouts, and hemodynamic analyses - Min and collegues have successfully identified some key proteins involved in the development of cardiac hypertrophy as well as potential drug targets and therapies for treating the disease 3,4,5 . (adinstruments.com)
- Thus, existing techniques and current knowledge have not used nor addressed the interactions of GEF-H1 with other proteins as a means by which cell proliferation can be controlled or the detection and treatment of cancerous, tumorigenic cells and tissues be developed. (justia.com)
- Like Rb protein, many of the proteins encoded by tumor suppressor genes act at specific points in the cell cycle. (medscape.com)
Phenotype2
- By studying the phenotype of the organism with the knocked out gene, researchers can gain insights into the biological processes that the gene is involved in. (wikipedia.org)
- Rescue of the failing (K ATP ) knockout phenotype was achieved by alternative control of myocardial calcium influx, bypassing uncoupled metabolic-electrical integration. (elsevierpure.com)
Embryo2
- The genome with inactivated gene is introduced into embryo and then selected for. (freeonlineresearchpapers.com)
- The paper "Formation of Genetically Mosaic Mouse Embryos and Early Development of Lethal (t12/t12)-Normal Mosaics," by Beatrice Mintz, describes a technique to fuse two mouse embryos into a single embryo. (asu.edu)
Cas910
- The researchers used the CRISPR-Cas9 genetic scissors to knock out the genes encoding the two receptors in moths. (sciencedaily.com)
- The CRISPR/Cas9 toolbox has already allowed the manipulation of gene function in basal land plants, butterflies, crickets and Atlantic salmon, and many more are sure to follow. (mdpi.com)
- This topical collection on " Gene Editing " aims to provide a forum for discussions on the latest technical developments in the fields of general genome engineering technologies, including (i) the establishment of cell culture systems, and (ii) the development of established and emerging organismal models by CRISPR/Cas9 or similar genome engineering tools. (mdpi.com)
- A Penn State-led team of interdisciplinary researchers has developed techniques to improve the efficiency of CRISPR-Cas9, the genome editing technique that earned the Nobel Prize in 2020. (eurekalert.org)
- While CRISPR-Cas9 is faster, less expensive and more accurate than other gene-editing methods, according to project leader Xiaojun "Lance" Lian, associate professor of biomedical engineering and biology at Penn State, the technology has limitations - especially in applications to improve human health. (eurekalert.org)
- The human genome is enormous, and CRISPR-Cas9 makes it possible for scientists to find and target a mutated gene for the purpose of studying it," Lian said. (eurekalert.org)
- CRISPR uses a disc of genetic material, known as plasmid DNA, to deliver guided ribonucleic acid (RNA) that positions the Cas9 enzyme at the precise location of the target gene. (eurekalert.org)
- When modRNA Cas9 is successfully delivered to the target gene, it creates a double-stranded break in the genome, which some cells will try to fix. (eurekalert.org)
- Target-gene-KO/knock-in (KI) efficiency of CRISPR/Cas9 has not been extensively investigated in marmosets. (elsevierpure.com)
- Although further improvement of KI strategies is required, these results indicated that CRISPR/Cas9 may be utilized to produce KO/KI marmosets via gene editing. (elsevierpure.com)
Researchers8
- One of the main advantages of gene knockouts is that they allow researchers to study the function of a specific gene in vivo, and to understand the role of the gene in normal development and physiology as well as in the pathology of diseases. (wikipedia.org)
- Researchers can insert new genes into these or knock out existing genes with great precision. (newscientist.com)
- The researchers also found that the modRNA could improve other gene editing techniques, such as base editing. (eurekalert.org)
- According to Lian, as more gene-editing labs improve gene editing efficiency and effectiveness, researchers will be able to better understand genes and their functions more quickly. (eurekalert.org)
- Ben works with researchers in France, who developed a similar gene-knockout technique independently, to probe the bug. (monash.edu)
- Researchers from the pharmaceutical research firm Hematech cultivated a colony of cattle cells in the lab and used a genetic engineering technique to knock out the gene that codes for the production of the prion protein. (acs.org)
- What techniques are utilized to investigate the role of IL18RAP in immune responses, inflammation, and diseases, and how do researchers assess its potential as a therapeutic target? (creativebiomart.net)
- In many crops, genome engineering techniques have enabled researchers and breeders to take advantage of a vast knowledge base of plant physiology, pathology, and genetics. (frontiersin.org)
Organism7
- Knocking out two genes simultaneously in an organism is known as a double knockout (DKO). (wikipedia.org)
- Function of the gene can be found by "turning it off" and studying the effect on the organism. (freeonlineresearchpapers.com)
- A discrepancy in the metabolic pathway of the organism would indicate that a gene coding for a "missing factor" isn't functioning thus will allow its isolation and identification. (freeonlineresearchpapers.com)
- As scientific understanding of stem cells, gene editing, and organism development improved, Garry felt that her career path was clear. (the-scientist.com)
- But they do have techniques that allow them to snip out (or turn off) genes in an organism. (snexplores.org)
- One way is to observe how a cell (or a whole organism) behaves when that single gene is absent, or at least not working. (snexplores.org)
- What is the biological factor (gene or something else in case of humans) which motivates an organism to reproduce? (stackexchange.com)
Genetics2
- That led me to find a place where I could use genetics to manipulate genes, to try to knock them out, to see what happens," says Tsien. (the-scientist.com)
- Increased understanding of plant genetics and the development of powerful and easier-to-use gene editing tools over the past century have revolutionized humankind's ability to deliver precise genotypes in crops. (frontiersin.org)
Genetically1
- This study is the first to demonstrate how the power of mouse knockout data can be systematically exploited to better understand genetically heterogeneous neurological disorders. (ed.ac.uk)
Mutations2
- Originally, naturally occurring mutations were identified and then gene loss or inactivation had to be established by DNA sequencing or other methods. (wikipedia.org)
- Base editing can knock out genes or correct mutations in the genome by using a protein to change a single nucleotide instead of cutting both strands, like CRISPR does. (eurekalert.org)
Developmental2
- Conditional knockouts are particularly useful for studying developmental processes and for understanding the role of a gene in specific cell types or tissues. (wikipedia.org)
- Chlamydia trachomatis is an obligate intracellular human pathogen that exhibits stage-specific gene transcription throughout a biphasic developmental cycle. (plos.org)
Pathways3
- For example, the loss of a single gene may not fully mimic the effects of a genetic disorder, and the knockouts may have unintended effects on other genes or pathways. (wikipedia.org)
- Cutting-edge laboratory techniques were used to reveal the genetic and molecular signaling pathways and underlying cellular mechanisms. (tsukuba.ac.jp)
- What pathways are this gene/protein implicaed in? (cancerindex.org)
Protein16
- Gene expression and protein level analysis through e.g. (fems-microbiology.org)
- The goal of each gene is to make a protein. (snexplores.org)
- Each gene in our DNA produces a different protein. (snexplores.org)
- Often, however, scientists don't know which gene produces which protein. (snexplores.org)
- Watching for which protein - or which protein effect - is now gone points to the role of the protein's maker, or gene. (snexplores.org)
- That mistake makes the gene a total dud - it can't possibly help produce a protein. (snexplores.org)
- The human genome contains about 20,000 protein-coding genes, but the coding parts of our genes account for only about 2 percent of the entire genome. (phys.org)
- The protein encoded by this gene is a nuclear protein that binds the E3 ubiquitin ligase SMURF2. (cancerindex.org)
- What does this gene/protein do? (cancerindex.org)
- [ 1 ] His prediction was subsequently supported by the cloning of the retinoblastoma tumor suppressor gene ( RB1 ) and by functional studies of the retinoblastoma protein, Rb. (medscape.com)
- For example, the TP53 gene, located on chromosome 17, encodes a 53-kd nuclear protein that functions as a cell cycle checkpoint. (medscape.com)
- Interestingly, many genes are induced at the mRNA- and protein level within a few minutes after being touched. (lu.se)
- This gene encodes the protein FIC1, also known as ATP8B1. (medscape.com)
- This suggests that in most patients with PFIC-2, the gene defect is sufficiently severe to produce no product or a protein that cannot be inserted into the canalicular membrane. (medscape.com)
- In PFIC3, a mutation in the gene ABCB4 on chromosome 7q21 encodes the protein MDR3, which functions in the translocation of phosphatidylcholine across the canalicular membrane. (medscape.com)
- TCDD for every step of the mechanism described for 2,3,7,8-TCDD carcinogenesis in humans including receptor binding, gene expression, protein activity changes, cellular replication, oxidative stress, promotion in initiation-promotion studies and complete carcinogenesis in laboratory animals. (who.int)
Transgenic1
- Plant transformation techniques are well developed for making transgenic varieties in certain crops and model organisms, yet reagent delivery and plant regeneration remain key bottlenecks to applying the technology of gene editing to most crops. (frontiersin.org)
Essential Genes1
- Identification of essential genes at all different stages of the life cycle is urgently required for clinical development of tools for malaria control and eradication. (pasteur.fr)
Editing7
- Only 20% to 30% of the targeted cells will receive gene-editing DNA when using CRISPR. (eurekalert.org)
- Our modRNA-based method was more than four times more efficient, at 68%, than the plasmid-based technique, at about 16%, in editing the genome successfully. (eurekalert.org)
- Gene editing technologies have enabled production of target-gene knock-out (KO) NHP models. (elsevierpure.com)
- This review highlights diverse strategies to deliver CRISPR/Cas gene editing reagents to regenerable plant cells and to recover edited plants without unwanted integration of transgenes. (frontiersin.org)
- Some examples include delivering DNA-free gene editing reagents such as ribonucleoproteins or mRNA, relying on reagent expression from non-integrated DNA, using novel delivery mechanisms such as viruses or nanoparticles, using unconventional selection methods to avoid integration of transgenes, and/or avoiding tissue culture altogether. (frontiersin.org)
- These methods are advancing rapidly and already enabling crop scientists to make use of the precision of CRISPR gene editing tools. (frontiersin.org)
- Gene editing tools are being applied in basic research to close the knowledge gap, but the requirements for gene editing techniques for agriculture are different than those for research. (frontiersin.org)
Strains4
- A cell culture model, based on wild-type and specific integrin knockout cell lines lacking the integrin subunits αv, β1 or β3, was used to investigate the susceptibility to WNV, and to evaluate binding and replication efficiencies of four distinct strains (New York 1999, Uganda 1937, Sarafend and Dakar). (nih.gov)
- Using this technique, the appearance of several S. aureus gene knockout strains were studied. (eur.nl)
- Their research strategy included advanced genetic engineering to generate mutant flies of specific gene knockout strains (in which genetic expression has been inactivated or deleted) and knock-in strains (in which a one-for-one substitution of a genetic sequence has been created at a particular location). (tsukuba.ac.jp)
- Two strains may be bred together to produce a mixture of the genes of each strain. (uwm.edu)
Zebrafish2
Expression of ge2
- They dynamically regulate the expression of genes, transposable elements, and higher-order chromatin structures. (pasteur.fr)
- TP53 activates the expression of genes involved in apoptosis, cell cycle regulation (p21), and MDM2. (medscape.com)
Embryonic3
- The new technique means they will not need embryonic stem cells. (newscientist.com)
- Most common and most controversial is embryonic stem-cell mediated gene transfer. (freeonlineresearchpapers.com)
- It involves introduction of modified DNA into embryonic stem-cells, which will take up the DNA and hopefully express the desired genes. (freeonlineresearchpapers.com)
MRNA1
- In this study, optimum conditions for target gene modification efficacies of CRISPR/mRNA and CRISPR/nuclease in marmoset embryos were examined. (elsevierpure.com)
Scientists10
- But scientists have not managed to isolate such cells from farm animals, and must rely instead on injecting genes randomly into early embryos. (newscientist.com)
- This allows scientists to investigate what specific genes do in the body. (yourgenome.org)
- Since discovery of genes scientists have been researching a way to temper with them to achieve a desirable effect. (freeonlineresearchpapers.com)
- Scientists can do that by disabling - or knocking out - a desired gene. (snexplores.org)
- To find out, scientists can start by knocking out the gene they are interested in. (snexplores.org)
- To knock out the gene, scientists first find or create a version of the gene that doesn't work. (snexplores.org)
- Called a reporter gene , that tag can alert scientists when the new gene has been successfully accepted by the cell. (snexplores.org)
- Scientists can use that cellular toolbox to slip their knockout gene into the DNA. (snexplores.org)
- The DNA surrounding the gene the scientists want to replace can act like a disguise and helps sneak the dud gene in. (snexplores.org)
- When scientists insert their dud gene into a cell, they make sure it has perfect copies of the DNA surrounding the gene that they want to replace. (snexplores.org)
20,0001
- The human body has more than 20,000 genes, yet we study the functions of only about 10% of them," Lian said. (eurekalert.org)
Phenotypes4
- Some gene knockouts produce infertile phenotypes with obviously missing, specific activities that affect acrosome biogenesis during spermatogenesis or interfere with acrosome function in mature sperm. (nih.gov)
- CNV screening in clinical practice is limited because pathological CNVs cannot be distinguished routinely from benign CNVs, and because genes underlying patients' phenotypes remain largely unknown. (ed.ac.uk)
- Here, we present a novel, statistically robust approach that forges links between 148 MR-associated CNVs and phenotypes from approximately 5,000 mouse gene knockout experiments. (ed.ac.uk)
- 30% increases) and allowed the identification of 78 genes that may contribute to MR and associated phenotypes. (ed.ac.uk)
Bacterial2
- Adapting the Cre/loxP system that phage use to insert their genes into bacterial chromosomes, Tsien was able to shut down the activity of the NMDA receptor in the CA1 region of the hippocampus, an area critical for learning and memory. (the-scientist.com)
- How to name this bacterial gene when running out of letters? (stackexchange.com)
Specific9
- Gene knockouts (also known as gene deletion or gene inactivation) are a widely used genetic engineering technique that involves the targeted removal or inactivation of a specific gene within an organism's genome. (wikipedia.org)
- A complete gene knockout permanently inactivates the gene, while a conditional gene knockout allows for the gene to be turned off and on at specific times or in specific tissues. (wikipedia.org)
- This method is used to test the function of a specific gene. (sciencedaily.com)
- The targeted gene transfer can be used to replace the normal endogenous gene with a specific mutant form of the same gene or the whole gene may be replaced by a DNA sequence desired. (assignmenthelp.net)
- For the next three-and-a-half years, in the early to mid-90s, Tsien labored over the development of a technique to produce a region-specific gene knockout in mouse brain. (the-scientist.com)
- People in other fields had used the Cre/loxP system," says Ya-Ping Tang of the University of Chicago, Tsien's former postdoc, "but Joe Tsien was the first person to use it in neuroscience research, successfully producing a brain region-specific knockout. (the-scientist.com)
- and rapidly determine all the DNA sequences in the genome that regulate the expression of a specific gene. (finchannel.com)
- Particularly, viral infection triggers specific signaling programs within the infected cells that results in substantial changes in host gene expression. (cdc.gov)
- At present, specific gene defects have been identified for three subtypes of PFIC (see Table 1 under Pathophysiology ). (medscape.com)
Regulate the expression1
- Our results show that all 6 candidates regulate the expression of germline genes. (pasteur.fr)
Conditional2
- There are two main types of gene knockouts: complete and conditional. (wikipedia.org)
- Here, we describe a method that supports conditional gene deletion across the life cycle for the first time. (pasteur.fr)
Inactivation1
- Inactivation of tumor suppressor genes, whose products normally provide negative control of cell proliferation, contributes to malignant transformation in various cell types. (medscape.com)
Metabolic2
- Over the next five years, Farris and her team will combine a variety of new techniques and technologies - including expansion and scanning block face electron microscopy to develop 3D neuronal reconstructions, and real-time metabolic analysis - to describe the bioenergetic and molecular properties of CA2 neurons. (neurosciencenews.com)
- Defective decoding of hypertension-induced metabolic distress signals in the (K ATP ) channel knockout set in motion pathological calcium overload and aggravated cardiac remodeling through a calcium/calcineurin-dependent cyclosporine-sensitive pathway. (elsevierpure.com)
Humans1
- A method of correcting these defective genes (gene therapy) is being developed in animals with hopes that prevention or a cure for humans will result. (uwm.edu)
Characterize2
- Co-immunoprecipitation assays, FRET studies, and biophysical techniques characterize IL18RAP's interactions with IL18 and IL18R1 partners. (creativebiomart.net)
- Tyo, a biology major in the Eberly College of Arts and Sciences , used a gene knockout technique to clone and characterize a new gene from M. brunneum that is the last step in making the ergot alkaloids in the species. (wvresearch.org)
Chromosomes1
- This causes the genes to become homozygous (same strain) at nearly all the loci on the chromosomes. (uwm.edu)
Strands2
- Homologous recombination is the exchange of genes between two DNA strands that include extensive regions of base sequences that are identical to one another. (wikipedia.org)
- DNA is composed of long strands of genes. (snexplores.org)
Mutation7
- Gene knockout by mutation is commonly carried out in bacteria. (wikipedia.org)
- Homologous recombination, a type of gene targeting used in genetic engineering, involves the introduction of an engineered mutation into a particular gene in order to learn more about the function of that gene. (wikipedia.org)
- It involves introduction of a mutation into the "unknown" gene which will suppress its expression. (freeonlineresearchpapers.com)
- These often will be genes with some serious mistake, or mutation . (snexplores.org)
- Germline mutation of one TP53 allele is found in patients with Li-Fraumeni syndrome who generally inherit a mutated TP53 gene from an affected parent. (medscape.com)
- PFIC1 is caused by a genetic mutation in the ATP8B1 gene on chromosome 18q21-22. (medscape.com)
- PFIC2 is caused by a mutation in the ABCB11 gene on chromosome 2q24 that encodes the bile salt export pump (BSEP). (medscape.com)
Involves3
- A Feature Paper should be a substantial original Article that involves several techniques or approaches, provides an outlook for future research directions and describes possible research applications. (mdpi.com)
- DNA microinjections is a common technique used for gene targeting as it involves manipulation and reintroduction of the genetic material into the same species. (freeonlineresearchpapers.com)
- Another technique involves the removal or blocking instead of addition of a gene from the animal. (uwm.edu)
Genomes1
- When compared with the human genome it was found that the two genomes were of similar size and almost every gene in the human genome has a counterpart in the mouse. (yourgenome.org)
Manipulate1
- More importantly, biotechnologists will for the first time be able to manipulate the genes of cells from farm animals directly before growing them into embryos. (newscientist.com)
Deletion1
- We further confirm efficient gene deletion by targeting the nonessential kinase FIKK7.1. (pasteur.fr)
Apoptosis1
- The TP53 gene is also capable of stimulating apoptosis of cells containing damaged DNA. (medscape.com)
Successfully1
- She is the first person to successfully apply the technique to this fungus. (wvresearch.org)
Genome3
- Additionally, gene knockouts are not always a good model for human disease as the mouse genome is not identical to the human genome, and mouse physiology is different from human physiology. (wikipedia.org)
- Almost every gene in the human genome has a counterpart in the mouse. (yourgenome.org)
- Knowing the base pair composition of the genome is only half the task done, the other half would be the identification of gene function. (freeonlineresearchpapers.com)
Sequence1
- Techniques to alter a gene sequence that result in an inactivated gene, or one in which the expression can be inactivated at a chosen time during development to study the loss of function of a gene. (uchicago.edu)
Target gene1
- Smad7 was confirmed as a target gene of miR-543. (cancerindex.org)
Function6
- It is the replacement of one gene function by another. (assignmenthelp.net)
- This additional genetic material either results in a gain or loss of function of a certain gene. (yourgenome.org)
- However the most important application of this technology so far is identification of gene function. (freeonlineresearchpapers.com)
- Gene targeting is a most common technique being used to identify the function of the gene. (freeonlineresearchpapers.com)
- Many genes have been identified through loss of function. (freeonlineresearchpapers.com)
- These animals are used to study the function of the various genes. (uwm.edu)
Genetic material2
- Homologous recombination, a key DNA repair mechanism in bacteria, enables the insertion of genetic material acquired through horizontal transfer of genes and transformation into DNA. (wikipedia.org)
- Scientific technology has developed the technique of introducing genetic material (DNA) from one animal into the fertilized egg of a different animal. (uwm.edu)
Species2
- Most common genes are present in all species, thus they are identified with relative ease. (freeonlineresearchpapers.com)
- We conducted a comparative study to evaluate the achromatic contrast sensitivity of 32 bird species from 12 orders using the optocollic reflex technique. (lu.se)
Experiments1
- In vitro experiments demonstrated that CTGF induced the expression of ligament-related genes, while TIPS scaffolds loaded with MHA and DFO enhanced the osteogenic-related gene expression of bone marrow stem cells (BMSCs) and promoted the migration and tubular formation of human umbilical vein endothelial cells (HUVECs). (bvsalud.org)
Molecular biology1
- In this question, I'm only considering the molecular-biology notion of a gene, not the older Mendelian notion. (stackexchange.com)
Human4
- The use of gene knockouts in mouse models has been particularly valuable in the study of human diseases. (wikipedia.org)
- Each human cell contains some 20,500 different genes. (snexplores.org)
- Another important class of tumor suppressor genes involved in cell cycle control and in the generation of human cancers is the cyclin-dependent kinase (CDK) inhibitors. (medscape.com)
- Although carcinogenic roles for the INK4B, INK4C, INK4D, CIP1, KIP1, and KIP2 genes appear to be limited, INK4A is among the most commonly mutated genes in human tumors. (medscape.com)
Immune1
- The success of viruses is explained, at least in part, by the acquisition of viral genes during evolution that antagonize the host immune response. (cdc.gov)
Known as gene2
- For gene knockout investigations, RNA interference (RNAi), a more recent method, also known as gene silencing, has gained popularity. (wikipedia.org)
- This approach is known as gene targeting or gene knockout. (freeonlineresearchpapers.com)
Intracellular1
- Most cells have intracellular sensors of viral products that, when activated, initiate a signaling cascade that results in transcriptional induction of the IFNβ gene. (cdc.gov)
Diseases1
- They are used to study the diseases associated with defective genes. (uwm.edu)
Interactions1
- Gene environment interactions and exposure to JP-8 jet fuel. (cdc.gov)
Mutagenic1
- Their mutagenic potential and gene regulatory effect have shaped the evolution of transcriptional networks involved in development, pluripotency, and inflammation. (lu.se)
Study2
- We demonstrate its potential by deleting essential and nonessential genes at different parasite stages, which opens up completely new avenues for the study of malaria and drug development. (pasteur.fr)
- We will use genetic tools to knock out genes and study the response of these mutants to touch stimulation in comparison to WT with regards to gene expression, phosphorylation cascades and alteration in growth and development. (lu.se)
Identification1
- Identification of hub molecules of FUS-ALS by Bayesian gene regulatory network analysis of iPSC model: iBRN. (uchicago.edu)
Alleles2
- In the former, only one of two gene copies (alleles) is knocked out, in the latter both are knocked out. (wikipedia.org)
- My textbook says: genes which code for a pair of contrasting traits are known as alleles. (stackexchange.com)
Cell1
- They insert this unworking gene into the DNA of a healthy cell. (snexplores.org)