Contig Mapping: Overlapping of cloned or sequenced DNA to construct a continuous region of a gene, chromosome or genome.Chromosome Mapping: Any method used for determining the location of and relative distances between genes on a chromosome.Chromosomes, Artificial, Yeast: Chromosomes in which fragments of exogenous DNA ranging in length up to several hundred kilobase pairs have been cloned into yeast through ligation to vector sequences. These artificial chromosomes are used extensively in molecular biology for the construction of comprehensive genomic libraries of higher organisms.Sequence Tagged Sites: Short tracts of DNA sequence that are used as landmarks in GENOME mapping. In most instances, 200 to 500 base pairs of sequence define a Sequence Tagged Site (STS) that is operationally unique in the human genome (i.e., can be specifically detected by the polymerase chain reaction in the presence of all other genomic sequences). The overwhelming advantage of STSs over mapping landmarks defined in other ways is that the means of testing for the presence of a particular STS can be completely described as information in a database.Physical Chromosome Mapping: Mapping of the linear order of genes on a chromosome with units indicating their distances by using methods other than genetic recombination. These methods include nucleotide sequencing, overlapping deletions in polytene chromosomes, and electron micrography of heteroduplex DNA. (From King & Stansfield, A Dictionary of Genetics, 5th ed)Chromosome Walking: A technique with which an unknown region of a chromosome can be explored. It is generally used to isolate a locus of interest for which no probe is available but that is known to be linked to a gene which has been identified and cloned. A fragment containing a known gene is selected and used as a probe to identify other overlapping fragments which contain the same gene. The nucleotide sequences of these fragments can then be characterized. This process continues for the length of the chromosome.Chromosomes, Artificial, Bacterial: DNA constructs that are composed of, at least, a REPLICATION ORIGIN, for successful replication, propagation to and maintenance as an extra chromosome in bacteria. In addition, they can carry large amounts (about 200 kilobases) of other sequence for a variety of bioengineering purposes.Bacteriophage P1: A species of temperate bacteriophage in the genus P1-like viruses, family MYOVIRIDAE, which infects E. coli. It is the largest of the COLIPHAGES and consists of double-stranded DNA, terminally redundant, and circularly permuted.Cosmids: Plasmids containing at least one cos (cohesive-end site) of PHAGE LAMBDA. They are used as cloning vehicles.Genetic Markers: A phenotypically recognizable genetic trait which can be used to identify a genetic locus, a linkage group, or a recombination event.Molecular Sequence Data: Descriptions of specific amino acid, carbohydrate, or nucleotide sequences which have appeared in the published literature and/or are deposited in and maintained by databanks such as GENBANK, European Molecular Biology Laboratory (EMBL), National Biomedical Research Foundation (NBRF), or other sequence repositories.Sequence Analysis, DNA: A multistage process that includes cloning, physical mapping, subcloning, determination of the DNA SEQUENCE, and information analysis.Expressed Sequence Tags: Partial cDNA (DNA, COMPLEMENTARY) sequences that are unique to the cDNAs from which they were derived.Gene Library: A large collection of DNA fragments cloned (CLONING, MOLECULAR) from a given organism, tissue, organ, or cell type. It may contain complete genomic sequences (GENOMIC LIBRARY) or complementary DNA sequences, the latter being formed from messenger RNA and lacking intron sequences.Base Sequence: The sequence of PURINES and PYRIMIDINES in nucleic acids and polynucleotides. It is also called nucleotide sequence.Radiation Hybrid Mapping: A method for ordering genetic loci along CHROMOSOMES. The method involves fusing irradiated donor cells with host cells from another species. Following cell fusion, fragments of DNA from the irradiated cells become integrated into the chromosomes of the host cells. Molecular probing of DNA obtained from the fused cells is used to determine if two or more genetic loci are located within the same fragment of donor cell DNA.Restriction Mapping: Use of restriction endonucleases to analyze and generate a physical map of genomes, genes, or other segments of DNA.Genomic Library: A form of GENE LIBRARY containing the complete DNA sequences present in the genome of a given organism. It contrasts with a cDNA library which contains only sequences utilized in protein coding (lacking introns).Genetic Linkage: The co-inheritance of two or more non-allelic GENES due to their being located more or less closely on the same CHROMOSOME.Peptide Mapping: Analysis of PEPTIDES that are generated from the digestion or fragmentation of a protein or mixture of PROTEINS, by ELECTROPHORESIS; CHROMATOGRAPHY; or MASS SPECTROMETRY. The resulting peptide fingerprints are analyzed for a variety of purposes including the identification of the proteins in a sample, GENETIC POLYMORPHISMS, patterns of gene expression, and patterns diagnostic for diseases.Epitope Mapping: Methods used for studying the interactions of antibodies with specific regions of protein antigens. Important applications of epitope mapping are found within the area of immunochemistry.Cloning, Molecular: The insertion of recombinant DNA molecules from prokaryotic and/or eukaryotic sources into a replicating vehicle, such as a plasmid or virus vector, and the introduction of the resultant hybrid molecules into recipient cells without altering the viability of those cells.Genome, Plant: The genetic complement of a plant (PLANTS) as represented in its DNA.Brain Mapping: Imaging techniques used to colocalize sites of brain functions or physiological activity with brain structures.Chromosomes, Plant: Complex nucleoprotein structures which contain the genomic DNA and are part of the CELL NUCLEUS of PLANTS.In Situ Hybridization, Fluorescence: A type of IN SITU HYBRIDIZATION in which target sequences are stained with fluorescent dye so their location and size can be determined using fluorescence microscopy. This staining is sufficiently distinct that the hybridization signal can be seen both in metaphase spreads and in interphase nuclei.Body Surface Potential Mapping: Recording of regional electrophysiological information by analysis of surface potentials to give a complete picture of the effects of the currents from the heart on the body surface. It has been applied to the diagnosis of old inferior myocardial infarction, localization of the bypass pathway in Wolff-Parkinson-White syndrome, recognition of ventricular hypertrophy, estimation of the size of a myocardial infarct, and the effects of different interventions designed to reduce infarct size. The limiting factor at present is the complexity of the recording and analysis, which requires 100 or more electrodes, sophisticated instrumentation, and dedicated personnel. (Braunwald, Heart Disease, 4th ed)Software: Sequential operating programs and data which instruct the functioning of a digital computer.Genome: The genetic complement of an organism, including all of its GENES, as represented in its DNA, or in some cases, its RNA.Microsatellite Repeats: A variety of simple repeat sequences that are distributed throughout the GENOME. They are characterized by a short repeat unit of 2-8 basepairs that is repeated up to 100 times. They are also known as short tandem repeats (STRs).Chromosomes, Bacterial: Structures within the nucleus of bacterial cells consisting of or containing DNA, which carry genetic information essential to the cell.Chromosomes, Human, Pair 11: A specific pair of GROUP C CHROMOSOMES of the human chromosome classification.DNA, Plant: Deoxyribonucleic acid that makes up the genetic material of plants.Amino Acid Sequence: The order of amino acids as they occur in a polypeptide chain. This is referred to as the primary structure of proteins. It is of fundamental importance in determining PROTEIN CONFORMATION.Algorithms: A procedure consisting of a sequence of algebraic formulas and/or logical steps to calculate or determine a given task.Epicardial Mapping: Recording the locations and measurements of electrical activity in the EPICARDIUM by placing electrodes on the surface of the heart to analyze the patterns of activation and to locate arrhythmogenic sites.DNA, Complementary: Single-stranded complementary DNA synthesized from an RNA template by the action of RNA-dependent DNA polymerase. cDNA (i.e., complementary DNA, not circular DNA, not C-DNA) is used in a variety of molecular cloning experiments as well as serving as a specific hybridization probe.Synteny: The presence of two or more genetic loci on the same chromosome. Extensions of this original definition refer to the similarity in content and organization between chromosomes, of different species for example.Chromosomes, Human, Pair 7: A specific pair of GROUP C CHROMOSOMES of the human chromosome classification.Genomics: The systematic study of the complete DNA sequences (GENOME) of organisms.Chromosomes, Human, Pair 3: A specific pair of human chromosomes in group A (CHROMOSOMES, HUMAN, 1-3) of the human chromosome classification.Genes, Plant: The functional hereditary units of PLANTS.Genome, Human: The complete genetic complement contained in the DNA of a set of CHROMOSOMES in a HUMAN. The length of the human genome is about 3 billion base pairs.Pedigree: The record of descent or ancestry, particularly of a particular condition or trait, indicating individual family members, their relationships, and their status with respect to the trait or condition.Multigene Family: A set of genes descended by duplication and variation from some ancestral gene. Such genes may be clustered together on the same chromosome or dispersed on different chromosomes. Examples of multigene families include those that encode the hemoglobins, immunoglobulins, histocompatibility antigens, actins, tubulins, keratins, collagens, heat shock proteins, salivary glue proteins, chorion proteins, cuticle proteins, yolk proteins, and phaseolins, as well as histones, ribosomal RNA, and transfer RNA genes. The latter three are examples of reiterated genes, where hundreds of identical genes are present in a tandem array. (King & Stanfield, A Dictionary of Genetics, 4th ed)High-Throughput Nucleotide Sequencing: Techniques of nucleotide sequence analysis that increase the range, complexity, sensitivity, and accuracy of results by greatly increasing the scale of operations and thus the number of nucleotides, and the number of copies of each nucleotide sequenced. The sequencing may be done by analysis of the synthesis or ligation products, hybridization to preexisting sequences, etc.Repetitive Sequences, Nucleic Acid: Sequences of DNA or RNA that occur in multiple copies. There are several types: INTERSPERSED REPETITIVE SEQUENCES are copies of transposable elements (DNA TRANSPOSABLE ELEMENTS or RETROELEMENTS) dispersed throughout the genome. TERMINAL REPEAT SEQUENCES flank both ends of another sequence, for example, the long terminal repeats (LTRs) on RETROVIRUSES. Variations may be direct repeats, those occurring in the same direction, or inverted repeats, those opposite to each other in direction. TANDEM REPEAT SEQUENCES are copies which lie adjacent to each other, direct or inverted (INVERTED REPEAT SEQUENCES).DNA Fingerprinting: A technique for identifying individuals of a species that is based on the uniqueness of their DNA sequence. Uniqueness is determined by identifying which combination of allelic variations occur in the individual at a statistically relevant number of different loci. In forensic studies, RESTRICTION FRAGMENT LENGTH POLYMORPHISM of multiple, highly polymorphic VNTR LOCI or MICROSATELLITE REPEAT loci are analyzed. The number of loci used for the profile depends on the ALLELE FREQUENCY in the population.Chromosomes, Human, Pair 16: A specific pair of GROUP E CHROMOSOMES of the human chromosome classification.Sequence Alignment: The arrangement of two or more amino acid or base sequences from an organism or organisms in such a way as to align areas of the sequences sharing common properties. The degree of relatedness or homology between the sequences is predicted computationally or statistically based on weights assigned to the elements aligned between the sequences. This in turn can serve as a potential indicator of the genetic relatedness between the organisms.Haplotypes: The genetic constitution of individuals with respect to one member of a pair of allelic genes, or sets of genes that are closely linked and tend to be inherited together such as those of the MAJOR HISTOCOMPATIBILITY COMPLEX.Computational Biology: A field of biology concerned with the development of techniques for the collection and manipulation of biological data, and the use of such data to make biological discoveries or predictions. This field encompasses all computational methods and theories for solving biological problems including manipulation of models and datasets.Models, Genetic: Theoretical representations that simulate the behavior or activity of genetic processes or phenomena. They include the use of mathematical equations, computers, and other electronic equipment.DNA Probes: Species- or subspecies-specific DNA (including COMPLEMENTARY DNA; conserved genes, whole chromosomes, or whole genomes) used in hybridization studies in order to identify microorganisms, to measure DNA-DNA homologies, to group subspecies, etc. The DNA probe hybridizes with a specific mRNA, if present. Conventional techniques used for testing for the hybridization product include dot blot assays, Southern blot assays, and DNA:RNA hybrid-specific antibody tests. Conventional labels for the DNA probe include the radioisotope labels 32P and 125I and the chemical label biotin. The use of DNA probes provides a specific, sensitive, rapid, and inexpensive replacement for cell culture techniques for diagnosing infections.Genome, Bacterial: The genetic complement of a BACTERIA as represented in its DNA.Hybrid Cells: Any cell, other than a ZYGOTE, that contains elements (such as NUCLEI and CYTOPLASM) from two or more different cells, usually produced by artificial CELL FUSION.Chromosomes, Human, Pair 12: A specific pair of GROUP C CHROMOSOMES of the human chromosome classification.

*  Design of 454 pyrosequencing contig generated from the | Open-i
Design of 454 pyrosequencing contig generated from the digestion of genomic DNA with restriction enzymes (EcoRI and BspEI), the ... Figure 2: Design of 454 pyrosequencing contig generated from the digestion of genomic DNA with restriction enzymes (EcoRI and ... Figure 2: Design of 454 pyrosequencing contig generated from the digestion of genomic DNA with restriction enzymes (EcoRI and ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC2874759_1471-2156-11-32-2&req=4
*  Omics! Omics!: Complete Genomics Goes Long
... and used to build a map -- analogous to linkage mapping. Furthermore, true variants will show up in a pool repeatedly, whereas ... and then resolved into contigs of alleles (e). If parental allele information is available, then labeling of the contigs by ... A huge event in the genomics community this summer has been the Oxford Nanopore MinION Access Program (MAP), which has enabled ...
  https://omicsomics.blogspot.com/2012/07/complete-genomics-goes-long.html
*  Living in an Ivory Basement - streaming elk
The tule elk reads were de novo assembled into 602,862 contiguous sequences ('contigs') averaging 3,973 bp in length (N50 = ... of the genome mapping to the sheep genome. This magnitude of heterozygosity is in line with other bottlenecked mammal ... Alignment of all elk reads back to these contigs revealed 3,571,069 polymorphic sites (0.15% of sites). Assuming a similar ... 6,885 bp, maximum contig length = 72,391 bp), for a total genome sequence size of 2.395 billion bp (Gbp). All scaffolds and raw ...
  http://ivory.idyll.org/blog/tag/streaming-elk.html
*  contig mapping - oi
Projector: automatic contig mapping for gap closure purposes Projector 2: contig mapping for efficient gap-closure of ... contig mapping' can also refer to... contig mapping ... contig mapping. in Oxford Dictionary of Biochemistry and ... A technique used in projects such as the Human Genome Project to enable the physical map of (part of) a chromosome to be ... The method relies on the use of overlapping clones, referred to as contigs. ...
  http://oxfordindex.oup.com/view/10.1093/oi/authority.20110803095634921
*  Contig map | Article about Contig map by The Free Dictionary
Find out information about Contig map. A region of chromosome defined by its hybridization to one or more cloned ... Contig map , Article about Contig map by The Free Dictionary https://encyclopedia2.thefreedictionary.com/Contig+map ... contig. (redirected from Contig map). Also found in: Medical. contig. [kən′tig] (genetics) A region of chromosome defined by ... The matching results can be displayed in matrix or table form, as well as in dendrograms and contig maps.. Bio Image announces ...
  http://encyclopedia2.thefreedictionary.com/Contig+map
*  Cuticchia A.J., Arnold J., Brody H. et al. CMAP: Contig mapping and...
CMAP: Contig mapping and analysis package, a relational database for chromosome reconstruction // Cabios.-1992.-v.8.-N 5.-P. ... CMAP: Contig mapping and analysis package, a relational database for chromosome reconstruction // Cabios.-1992.-v.8.-N 5.-P. ...
  http://sr.isa.ac.ru/bin/nkws.exe/ans/dba/?HYZ9EJxGHoxITcyHUMi6Wc0KW6VyErJoOKBXO4ZV622iGWsg623mPaxgN0-89WkUEb7jN5YUG0sUNLEUMKki62BBEJ
*  Fine-mapping and construction of a bovine contig spanning the ovine callipyge locus. - Shay T. L.
Using Type I loci mapping to the IDVGA30-OY3 interval as anchor points, we have constructed a 1.4-Mb bovine BAC contig ... Reference : Fine-mapping and construction of a bovine contig spanning the ovine callipyge locus.. ... Fine-mapping and construction of a bovine contig spanning the ovine callipyge locus. ... The OAR18q linkage map and human HSA14q transcript map were aligned by genotyping two bovine-hamster whole-genome radiation ...
  http://orbi.ulg.ac.be/handle/2268/102190
*  Integrated physical, genetic and genome map of chickpea ( Cicer arietinum L.) | SpringerLink
Physical map of chickpea was developed for the reference chickpea genotype (ICC 4958) using bacterial artificial chromosome ( ... Anchoring physical map with genetic maps. In order to anchor the contig map with the genetic map, a total of 337 polymorphic ... contig map with the other available genetic maps of chickpea for locating all mapped genes and QTLs to physical map contigs. ... Anchoring of physical map with genetic maps. For anchoring the physical map with the genetic map, a set of 337 BAC clones ...
  https://link.springer.com/article/10.1007%2Fs10142-014-0363-6
*  Mapping of the mouse hyh gene to a YAC/BAC contig on proximal Chromosome 7, Mammalian Genome | 10.1007/s00335-001-2144-5 |...
"Mapping of the mouse hyh gene to a YAC/BAC contig on proximal Chromosome 7, Mammalian Genome" on DeepDyve, the largest online ... Mapping of the mouse hyh gene to a YAC/BAC contig on proximal Chromosome 7. Mapping of the mouse hyh gene to a YAC/BAC contig ... Mapping of the mouse hyh gene to a YAC/BAC contig on proximal Chromosome 7. Chae, Teresa H.; Allen, Kristina M.; Davisson, ... map. Our physical map and transcript map may be useful for positional cloning of genes in this unusually gene-rich region of ...
  https://www.deepdyve.com/lp/springer_journal/mapping-of-the-mouse-hyh-gene-to-a-yac-bac-contig-on-proximal-3NJMjFA0eK
*  Kuipers, prof.dr. Oscar | Mensen en meningen | Nieuws en agenda | Over ons | Rijksuniversiteit Groningen
van Hijum, S. A. F. T., Zomer, A. L., Kuipers, O. P., & Kok, J. (2005). Projector 2: contig mapping for efficient gap-closure ... van Hijum, S. A. F. T., Zomer, A. L., Kuipers, O. P., & Kok, J. (2003). Projector: automatic contig mapping for gap closure ...
  https://www.rug.nl/about-us/news-and-events/people-perspectives/scientists-in-focus/kuipers
*  Plus it
... number of contigs, total contig map length, average contig length, and average number of markers per contig. ... d, Contig map. The relative position of markers on BAC contigs are indicated by horizontal lines. Contigs are connected to the ... Although the mapped loci nominally appear to cluster at the two ends of the contig, it is premature to assert that this ... based on the sorghum genetic map and comparative maps of other taxa) that are yet to be mapped to the BACs. ...
  http://www.plantphysiol.org/content/125/3/1325
*  Frontiers | Quality control on the frontier | Genetics
Figure 6. Taxonomy of unmapped reads assembled into contigs. A graphical representation of the number of contigs mapping to ... numbers of reads mapping to the reference genome; insert size distributions; coverage statistics; mapping quality; and a ... An additional useful QC check is to perform a de novo assembly on any reads which do not map to the reference sequences. To do ... To evaluate the success of an RNA preparation we map the full set of reads to the set of ERCC transcripts using the Bowtie ...
  https://www.frontiersin.org/articles/10.3389/fgene.2014.00157/full
*  K lactis entry page
3X MAPPING. *RST BACs & Contigs mapping on chromosomes. - RST - BACs - Contigs: complete summay - BACs hybridation on ... RST matching on 3X contigs: summary. - RST matching on 3X contigs. - RST not matching on 3X contigs. - RST matching on BACs: ... MAPPING: 10X MAPPING. Complete BACs mapping on finished chromosomes *Chromosome I : FINAL sequence *Chromosome II = 02/05/03 ... 1807 contigs *10413897 nt (10,4 Mb) total sequence length in contigs *Lengths range : 117 -t 67224 nt ...
  http://www-archbac.u-psud.fr/genomes/r_klactis/klactis.html
*  Table of Contents - September 15, 1998, 95 (19) | PNAS
Construction and validation of yeast artificial chromosome contig maps by RecA-assisted restriction endonuclease cleavage Peter ... Allelic association under map error and recombinational heterogeneity: A tale of two sites Christine Lonjou, Andrew Collins, ... Hippocampal morphometry in schizophrenia by high dimensional brain mapping John G. Csernansky, Sarang Joshi, Lei Wang, John W. ...
  http://www.pnas.org/content/95/19
*  Todd, C. M.<...
A high-density YAC contig map of human chromosome 22. Nature. , 377 (6547 Suppl), pp. 367-79. ... A 6.5-Mb yeast artificial chromosome contig incorporating 33 DNA markers on the human X chromosome at Xq22. Genomics. , 19 (1 ... rodent monochromosomal hybrid panel for genetic complementation and genome mapping studies. Cytogenetics and Cell Genetics. , ...
  http://opus.bath.ac.uk/view/person_id/1121.html
*  Mapping and Sequencing the Human Genome: Primer on Molecular Genetics
A cDNA map shows the locations of expressed DNA regions (exons) on the chromosomal map. The more detailed cosmid contig map ... Physical maps are described in greater detail below. Low-Resolution Physical Mapping Chromosomal map. In a chromosomal map, ... of both conventional and new mapping methods to larger genomic regions. Contig maps: Bottom- up mapping. The bottom- up ... This approach yields maps with more continuity and fewer gaps between fragments than contig maps, but map resolution is lower ...
  https://biotech.law.lsu.edu/blaw/HGP/DOE1/prim2.html
*  Primer on Molecular Genetics ????Ŵ ѧ ?? |????רҵ ?????|?????? ??
cDNA map. + High-Resolution Physical Mapping. # Macrorestriction maps: Top-down mapping. # Contig maps: Bottom-up mapping. o ... o Mapping Strategies. o Genetic Linkage Maps. o Physical Maps. + Low-Resolution Physical Mapping. # Chromosomal map. # ... Partial Sequencing to Facilitate Mapping, Gene Identification. o End Games: Completing Maps and Sequences; Finding Specific ... o Mapping Databases. o Sequence Databases. + Nucleic Acids (DNA and RNA). + Proteins. * Impact of the Human Genome Project. ...
  http://bio-soft.net/bookhtml/primer.htm
*  High resolution physical mapping of a 6.7 Mb YAC contig spanning a region critical for the monosomy 21 phenotype in 21q21.3...
High resolution physical mapping of a 6.7 Mb YAC contig spanning a region critical for the monosomy 21 phenotype in 21q21.3- ... Genomics: international journal of gene mapping and nucleotide sequencing. - San Diego, Calif. ...
  https://repository.uantwerpen.be/link/irua/21185
*  Replies to NAASC letter
If cosmid or P1 contig maps are available, these regions should be sequence immediately in centers. It turns out that we can ... placing cDNAs on the map, completion of the physical map, adding more PCR-based markers to the map, etc.)? THE PHYSICAL MAP IS ... placing cDNAs on the map, completion of the physical map, adding more PCR-based markers to the map, etc.)? Sequencing from ... Let the mapping and biology be done in individual labs but sequencing is only cost effective if done in centers. 6. What ...
  http://www.bio.net/bionet/mm/arab-gen/1994-June/002172.html
*  Probe - NCBI
A physical map of human chromosome 7: an integrated YAC contig map with average STS spacing of 79 kb. ... Genetic maps for probe. Organism. Map Type. Map Name. Chromosome. Position. Marker Name. Status. ... An STS-based radiation hybrid map of the human genome.. Stewart EA, McKusick KB, Aggarwal A, Bajorek E, Brady S, Chu A, Fang N ... Comprehensive human genetic maps: individual and sex-specific variation in recombination.. Broman KW, Murray JC, Sheffield VC, ...
  https://www.ncbi.nlm.nih.gov/probe?term=49010%5Bunists+id%5D
*  Probe - NCBI
A physical map of human chromosome 7: an integrated YAC contig map with average STS spacing of 79 kb. ... Genetic maps for probe. Organism. Map Type. Map Name. Chromosome. Position. Marker Name. Status. ... An STS-based map of the human genome.. Hudson TJ, Stein LD, Gerety SS, Ma J, Castle AB, Silva J, Slonim DK, Baptista R, ... A physical map of 30,000 human genes.. Deloukas P, Schuler GD, Gyapay G, Beasley EM, Soderlund C, Rodriguez-Tomé P, Hui L, ...
  https://www.ncbi.nlm.nih.gov/probe?term=31875%5Bunists+id%5D
*  Probe - NCBI
A physical map of human chromosome 7: an integrated YAC contig map with average STS spacing of 79 kb. ... Genetic maps for probe. Organism. Map Type. Map Name. Chromosome. Position. Marker Name. Status. ...
  https://www.ncbi.nlm.nih.gov/probe?term=1974%5Bunists+id%5D
*  Protocols for dry DNA storage and shipment at room temperature - Ivanova - 2013 - Molecular Ecology Resources - Wiley Online...
Next article in issue: Mass production of SNP markers in a nonmodel passerine bird through RAD sequencing and contig mapping to ... Next article in issue: Mass production of SNP markers in a nonmodel passerine bird through RAD sequencing and contig mapping to ...
  http://onlinelibrary.wiley.com/doi/10.1111/1755-0998.12134/full?globalMessage=0
*  Probe - NCBI
A physical map of human chromosome 7: an integrated YAC contig map with average STS spacing of 79 kb. ... Genetic maps for probe. Organism. Map Type. Map Name. Chromosome. Position. Marker Name. Status. ... An STS-based radiation hybrid map of the human genome.. Stewart EA, McKusick KB, Aggarwal A, Bajorek E, Brady S, Chu A, Fang N ... A fast and scalable radiation hybrid map construction and integration strategy.. Agarwala R, Applegate DL, Maglott D, Schuler ...
  https://www.ncbi.nlm.nih.gov/probe?term=65394%5Bunists+id%5D
*  Probe - NCBI
A physical map of human chromosome 7: an integrated YAC contig map with average STS spacing of 79 kb. ... Genetic maps for probe. Organism. Map Type. Map Name. Chromosome. Position. Marker Name. Status. ... A physical map of 30,000 human genes.. Deloukas P, Schuler GD, Gyapay G, Beasley EM, Soderlund C, Rodriguez-Tomé P, Hui L, ... An STS-based radiation hybrid map of the human genome.. Stewart EA, McKusick KB, Aggarwal A, Bajorek E, Brady S, Chu A, Fang N ...
  https://www.ncbi.nlm.nih.gov/probe?term=68127%5Bunists+id%5D

Chromosome regionsOgre (2008 film): Ogre is a 2008 American television horror film directed by Steven R. Monroe.Coles PhillipsDNA sequencer: A DNA sequencer is a scientific instrument used to automate the DNA sequencing process. Given a sample of DNA, a DNA sequencer is used to determine the order of the four bases: G (guanine), C (cytosine), A (adenine) and T (thymine).Sequence clustering: In bioinformatics, sequence clustering algorithms attempt to group biological sequences that are somehow related. The sequences can be either of genomic, "transcriptomic" (ESTs) or protein origin.Library (biology): In molecular biology, a library is a collection of DNA fragments that is stored and propagated in a population of micro-organisms through the process of molecular cloning. There are different types of DNA libraries, including cDNA libraries (formed from reverse-transcribed RNA), genomic libraries (formed from genomic DNA) and randomized mutant libraries (formed by de novo gene synthesis where alternative nucleotides or codons are incorporated).Symmetry element: A symmetry element is a point of reference about which symmetry operations can take place. In particular, symmetry elements can be centers of inversion, axes of rotation and mirror planes.Genetic linkage: Genetic linkage is the tendency of alleles that are located close together on a chromosome to be inherited together during the meiosis phase of sexual reproduction. Genes whose loci are nearer to each other are less likely to be separated onto different chromatids during chromosomal crossover, and are therefore said to be genetically linked.Epitope mapping: Epitope mapping is the process of experimentally identifying the binding sites, or ‘epitopes’, of antibodies on their target antigens. Identification and characterization of the binding sites of antibodies can aid in the discovery and development of new therapeutics, vaccines, and diagnostics.Ligation-independent cloning: Ligation-independent cloning (LIC) is a form of molecular cloning that is able to be performed without the use of restriction endonucleases or DNA ligase. This allows genes that have restriction sites to be cloned without worry of chopping up the insert.Mac OS X Server 1.0List of sequenced eukaryotic genomesMicrosatellite: A microsatellite is a tract of repetitive DNA in which certain DNA motifs (ranging in length from 2–5 base pairs) are repeated, typically 5-50 times. Microsatellites occur at thousands of locations in the human genome and they are notable for their high mutation rate and high diversity in the population.Circular bacterial chromosome: A circular bacterial chromosome is a bacterial chromosome in the form of a molecule of circular DNA. Unlike the linear DNA of most eukaryotes, typical bacterial chromosomes are circular.Protein primary structure: The primary structure of a peptide or protein is the linear sequence of its amino acid structural units, and partly comprises its overall biomolecular structure. By convention, the primary structure of a protein is reported starting from the amino-terminal (N) end to the carboxyl-terminal (C) end.Clonal Selection Algorithm: In artificial immune systems, Clonal selection algorithms are a class of algorithms inspired by the clonal selection theory of acquired immunity that explains how B and T lymphocytes improve their response to antigens over time called affinity maturation. These algorithms focus on the Darwinian attributes of the theory where selection is inspired by the affinity of antigen-antibody interactions, reproduction is inspired by cell division, and variation is inspired by somatic hypermutation.Ontario Genomics Institute: The Ontario Genomics Institute (OGI) is a not-for-profit organization that manages cutting-edge genomics research projects and platforms.The Ontario Genomics Institute OGI also helps scientists find paths to the marketplace for their discoveries and the products to which they lead, and it works through diverse outreach and educational activities to raise awareness and facilitate informed public dialogue about genomics and its social impacts.Pedigree chart: A pedigree chart is a diagram that shows the occurrence and appearance or phenotypes of a particular gene or organism and its ancestors from one generation to the next,pedigree chart Genealogy Glossary - About.com, a part of The New York Times Company.ParaHox: The ParaHox gene cluster is an array of homeobox genes (involved in morphogenesis, the regulation of patterns of anatomical development) from the Gsx, Xlox (Pdx) and Cdx gene families.Massive parallel sequencing: Massive parallel sequencing or massively parallel sequencing is any of several high-throughput approaches to DNA sequencing using the concept of massively parallel processing; it is also called next-generation sequencing (NGS) or second-generation sequencing. Some of these technologies emerged in 1994-1998 and became commercially available since 2005.Direct repeat: Direct repeats are a type of genetic sequence that consists of two or more repeats of a specific sequence.CS-BLASTPSI Protein Classifier: PSI Protein Classifier is a program generalizing the results of both successive and independent iterations of the PSI-BLAST program. PSI Protein Classifier determines belonging of the found by PSI-BLAST proteins to the known families.Global microbial identifier: The genomic epidemiological database for global identification of microorganisms or global microbial identifier (GMI) is a platform for storing whole genome sequencing (WGS) data of microorganisms, for the identification of relevant genes and for the comparison of genomes to detect and track-and-trace infectious disease outbreaks and emerging pathogens. The database holds two types of information: 1) genomic information of microorganisms, linked to, 2) metadata of those microorganism such as epidemiological details.CP 55,940

(1/676) A sequence-ready BAC clone contig of a 2.2-Mb segment of human chromosome 1q24.

Human chromosomal region 1q24 encodes two cloned disease genes and lies within large genetic inclusion intervals for several disease genes that have yet to be identified. We have constructed a single bacterial artificial chromosome (BAC) clone contig that spans over 2 Mb of 1q24 and consists of 78 clones connected by 100 STSs. The average density of mapped STSs is one of the highest described for a multimegabase region of the human genome. The contig was efficiently constructed by generating STSs from clone ends, followed by library walking. Distance information was added by determining the insert sizes of all clones, and expressed sequence tags (ESTs) and genes were incorporated to create a partial transcript map of the region, providing candidate genes for local disease loci. The gene order and content of the region provide insight into ancient duplication events that have occurred on proximal 1q. The stage is now set for further elucidation of this interesting region through large-scale sequencing.  (+info)

(2/676) Pleiotropic skeletal and ocular phenotypes of the mouse mutation congenital hydrocephalus (ch/Mf1) arise from a winged helix/forkhead transcriptionfactor gene.

Congenital hydrocephalus is an etiologically diverse, poorly understood, but relatively common birth defect. Most human cases are sporadic with familial forms showing considerable phenotypic and etiologic heterogeneity. We have studied the autosomal recessive mouse mutation congenital hydrocephalus ( ch ) to identify candidate human hydrocephalus genes and their modifiers. ch mice have a congenital, lethal hydrocephalus in association with multiple developmental defects, notably skeletal defects, in tissues derived from the cephalic neural crest. We utilized positional cloning methods to map ch in the vicinity of D13Mit294 and confirm that the ch phenotype is caused by homozygosity for a nonsense mutation in a gene encoding a winged helix/forkhead transcription factor ( Mf1 ). Based on linked genetic markers, we performed detailed phenotypic characterization of mutant homozygotes and heterozygotes to demonstrate the pleiotropic effects of the mutant gene. Surprisingly, ch heterozygotes have the glaucoma-related distinct phenotype of multiple anterior segment defects resembling Axenfeld-Rieger anomaly. We also localized a second member of this gene family ( Hfh1 ), a candidate for other developmental defects, approximately 470 kb proximal to Mf1.  (+info)

(3/676) Evidence for an ancient chromosomal duplication in Arabidopsis thaliana by sequencing and analyzing a 400-kb contig at the APETALA2 locus on chromosome 4.

As part of the European Scientists Sequencing Arabidopsis program, a contiguous region (396607 bp) located on chromosome 4 around the APETALA2 gene was sequenced. Analysis of the sequence and comparison to public databases predicts 103 genes in this area, which represents a gene density of one gene per 3.85 kb. Almost half of the genes show no significant homology to known database entries. In addition, the first 45 kb of the contig, which covers 11 genes, is similar to a region on chromosome 2, as far as coding sequences are concerned. This observation indicates that ancient duplications of large pieces of DNA have occurred in Arabidopsis.  (+info)

(4/676) A contiguous 3-Mb sequence-ready map in the S3-MX region on 21q22.2 based on high- throughput nonisotopic library screenings.

Progress in complete genomic sequencing of human chromosome 21 relies on the construction of high-quality bacterial clone maps spanning large chromosomal regions. To achieve this goal, we have applied a strategy based on nonradioactive hybridizations to contig building. A contiguous sequence-ready map was constructed in the Down syndrome congenital heart disease (DS-CHD) region in 21q22.2, as a framework for large-scale genomic sequencing and positional candidate gene approach. Contig assembly was performed essentially by high throughput nonisotopic screenings of genomic libraries, prior to clone validation by (1) restriction digest fingerprinting, (2) STS analysis, (3) Southern hybridizations, and (4) FISH analysis. The contig contains a total of 50 STSs, of which 13 were newly isolated. A minimum tiling path (MTP) was subsequently defined that consists of 20 PACs, 2 BACs, and 5 cosmids covering 3 Mb between D21S3 and MX1. Gene distribution in the region includes 9 known genes (c21-LRP, WRB, SH3BGR, HMG14, PCP4, DSCAM, MX2, MX1, and TMPRSS2) and 14 new additional gene signatures consisting of cDNA selection products and ESTs. Forthcoming genomic sequence information will unravel the structural organization of potential candidate genes involved in specific features of Down syndrome pathogenesis.  (+info)

(5/676) Expressed sequence tags from immature female sexual organ of a liverwort, Marchantia polymorpha.

A total of 970 expressed sequence tag (EST) clones were generated from immature female sexual organ of a liverwort, Marchantia polymorpha. The 376 ESTs resulted in 123 redundant groups, thus the total number of unique sequences in the EST set was 717. Database search by BLAST algorithm showed that 302 of the unique sequences shared significant similarities to known nucleotide or amino acid sequences. Six unique sequences showed significant similarities to genes that are involved in flower development and sexual reproduction, such as cynarase, fimbriata-associated protein and S-receptor kinase genes. The remaining unique 415 sequences have no significant similarity with any database-registered genes or proteins. The redundant 123 ESTs implied the presence of gene families and abundant transcripts of unknown identity. Analyses of the coding sequences of 61 unique sequences, which contained no ambiguous bases in the predicted coding regions, highly homologous to known sequences at the amino acid level with a similarity score greater than 400, and with stop codons at similar positions as their possible orthologues, indicated the presence of biased codon usage and higher GC content within the coding sequences (50.4%) than that within 3' flanking sequences (41.9%).  (+info)

(6/676) Refinement of the RP17 locus for autosomal dominant retinitis pigmentosa, construction of a YAC contig and investigation of the candidate gene retinal fascin.

The RP17 locus for autosomal dominant retinitis pigmentosa has previously been mapped to chromosome 17q by linkage analysis. Two unrelated South African families are linked to this locus and the identification of key recombination events assigned the RP17 locus to a 10 cM interval on 17q22. The work reported here refines the mapping of the locus from a 10 cM to a 1 cM interval between the microsatellite markers D17S1604 and D17S948. A physical map of this interval was constructed using information from the Whitehead/MIT YAC contig WC 17.8. Sequence-tagged site (STS) content mapping of seven overlapping YACs from this contig was employed in order to build the map. A BAC library was screened to cover a gap in the YAC contig and two positive BACs were identified. Intragenic polymorphisms in the retinal fascin gene provided evidence for the exclusion of this candidate as the RP17 disease gene.  (+info)

(7/676) Revealing hidden interval graph structure in STS-content data.

MOTIVATION: STS-content data for genomic mapping contain numerous errors and anomalies resulting in cross-links among distant regions of the genome. Identification of contigs within the data is an important and difficult problem. RESULTS: This paper introduces a graph algorithm which creates a simplified view of STS-content data. The shape of the resulting structure graph provides a quality check - coherent data produce a straight line, while anomalous data produce branches and loops. In the latter case, it is sometimes possible to disentangle the various paths into subsets of the data covering contiguous regions of the genome, i.e. contigs. These straight subgraphs can then be analyzed in standard ways to construct a physical map. A theoretical basis for the method is presented along with examples of its application to current STS data from human genome centers. AVAILABILITY: Freely available on request.  (+info)

(8/676) Comparative mapping of the region of human chromosome 7 deleted in williams syndrome.

Williams syndrome (WS) is a complex developmental disorder resulting from the deletion of a large (approximately 1.5-2 Mb) segment of human chromosome 7q11.23. Physical mapping studies have revealed that this deleted region, which contains a number of known genes, is flanked by several large, nearly identical blocks of DNA. The presence of such highly related DNA segments in close physical proximity to one another has hampered efforts to elucidate the precise long-range organization of this segment of chromosome 7. To gain insight about the structure and evolutionary origins of this important and complex genomic region, we have constructed a fully contiguous bacterial artificial chromosome (BAC) and P1-derived artificial chromosome (PAC) contig map encompassing the corresponding region on mouse chromosome 5. In contrast to the difficulties encountered in constructing a clone-based physical map of the human WS region, the BAC/PAC-based map of the mouse WS region was straightforward to construct, with no evidence of large duplicated segments, such as those encountered in the human WS region. To confirm this difference, representative human and mouse BACs were used as probes for performing fluorescence in situ hybridization (FISH) to metaphase and interphase chromosomes. Human BACs derived from the nonunique portion of the WS region hybridized to multiple, closely spaced regions on human chromosome 7q11.23. In contrast, corresponding mouse BACs hybridized to a single site on mouse chromosome 5. Furthermore, FISH analysis revealed the presence of duplicated segments within the WS region of various nonhuman primates (chimpanzee, gorilla, orangutan, and gibbon). Hybridization was also noted at the genomic locations corresponding to human chromosome 7p22 and 7q22 in human, chimpanzee, and gorilla, but not in the other animal species examined. Together, these results indicate that the WS region is associated with large, duplicated blocks of DNA on human chromosome 7q11.23 as well as the corresponding genomic regions of other nonhuman primates. However, such duplications are not present in the mouse.  (+info)



  • human
  • The OAR18q linkage map and human HSA14q transcript map were aligned by genotyping two bovine-hamster whole-genome radiation hybrid panels with the microsatellite markers, as well as with sequences corresponding to HSA 14q genes. (ac.be)
  • BACs can also be utilized to detect genes or large sequences of interest and then used to map them onto the human chromosome using BAC arrays. (wikipedia.org)