The type species of the genus MICROVIRUS. A prototype of the small virulent DNA coliphages, it is composed of a single strand of supercoiled circular DNA, which on infection, is converted to a double-stranded replicative form by a host enzyme.
Virulent bacteriophage and sole member of the genus Cystovirus that infects Pseudomonas species. The virion has a segmented genome consisting of three pieces of doubled-stranded DNA and also a unique lipid-containing envelope.
Viruses whose hosts are bacterial cells.
Viruses whose host is Escherichia coli.
Deoxyribonucleic acid that makes up the genetic material of viruses.
Viruses whose nucleic acid is DNA.
Viruses whose host is Bacillus. Frequently encountered Bacillus phages include bacteriophage phi 29 and bacteriophage phi 105.
Proteins found in any species of virus.
The phenomenon by which a temperate phage incorporates itself into the DNA of a bacterial host, establishing a kind of symbiotic relation between PROPHAGE and bacterium which results in the perpetuation of the prophage in all the descendants of the bacterium. Upon induction (VIRUS ACTIVATION) by various agents, such as ultraviolet radiation, the phage is released, which then becomes virulent and lyses the bacterium.
A species of gram-negative, facultatively anaerobic, rod-shaped bacteria (GRAM-NEGATIVE FACULTATIVELY ANAEROBIC RODS) commonly found in the lower part of the intestine of warm-blooded animals. It is usually nonpathogenic, but some strains are known to produce DIARRHEA and pyogenic infections. Pathogenic strains (virotypes) are classified by their specific pathogenic mechanisms such as toxins (ENTEROTOXIGENIC ESCHERICHIA COLI), etc.
A single chain of deoxyribonucleotides that occurs in some bacteria and viruses. It usually exists as a covalently closed circle.
The process by which a DNA molecule is duplicated.
A family of bacteriophages containing one genus (Cystovirus) with one member (BACTERIOPHAGE PHI 6).
The functional hereditary units of VIRUSES.
Bacteriophages whose genetic material is RNA, which is single-stranded in all except the Pseudomonas phage phi 6 (BACTERIOPHAGE PHI 6). All RNA phages infect their host bacteria via the host's surface pili. Some frequently encountered RNA phages are: BF23, F2, R17, fr, PhiCb5, PhiCb12r, PhiCb8r, PhiCb23r, 7s, PP7, Q beta phage, MS2 phage, and BACTERIOPHAGE PHI 6.
Virulent bacteriophage and type species of the genus T4-like phages, in the family MYOVIRIDAE. It infects E. coli and is the best known of the T-even phages. Its virion contains linear double-stranded DNA, terminally redundant and circularly permuted.
The folding of an organism's DNA molecule into a compact, orderly structure that fits within the limited space of a CELL or VIRUS PARTICLE.
The process of intracellular viral multiplication, consisting of the synthesis of PROTEINS; NUCLEIC ACIDS; and sometimes LIPIDS, and their assembly into a new infectious particle.
Any detectable and heritable change in the genetic material that causes a change in the GENOTYPE and which is transmitted to daughter cells and to succeeding generations.
The adhesion of gases, liquids, or dissolved solids onto a surface. It includes adsorptive phenomena of bacteria and viruses onto surfaces as well. ABSORPTION into the substance may follow but not necessarily.
A temperate inducible phage and type species of the genus lambda-like viruses, in the family SIPHOVIRIDAE. Its natural host is E. coli K12. Its VIRION contains linear double-stranded DNA with single-stranded 12-base 5' sticky ends. The DNA circularizes on infection.
The sequence of PURINES and PYRIMIDINES in nucleic acids and polynucleotides. It is also called nucleotide sequence.
Extrachromosomal, usually CIRCULAR DNA molecules that are self-replicating and transferable from one organism to another. They are found in a variety of bacterial, archaeal, fungal, algal, and plant species. They are used in GENETIC ENGINEERING as CLONING VECTORS.
Enzymes that are part of the restriction-modification systems. They catalyze the endonucleolytic cleavage of DNA sequences which lack the species-specific methylation pattern in the host cell's DNA. Cleavage yields random or specific double-stranded fragments with terminal 5'-phosphates. The function of restriction enzymes is to destroy any foreign DNA that invades the host cell. Most have been studied in bacterial systems, but a few have been found in eukaryotic organisms. They are also used as tools for the systematic dissection and mapping of chromosomes, in the determination of base sequences of DNAs, and have made it possible to splice and recombine genes from one organism into the genome of another. EC 3.21.1.
Any of the covalently closed DNA molecules found in bacteria, many viruses, mitochondria, plastids, and plasmids. Small, polydisperse circular DNA's have also been observed in a number of eukaryotic organisms and are suggested to have homology with chromosomal DNA and the capacity to be inserted into, and excised from, chromosomal DNA. It is a fragment of DNA formed by a process of looping out and deletion, containing a constant region of the mu heavy chain and the 3'-part of the mu switch region. Circular DNA is a normal product of rearrangement among gene segments encoding the variable regions of immunoglobulin light and heavy chains, as well as the T-cell receptor. (Riger et al., Glossary of Genetics, 5th ed & Segen, Dictionary of Modern Medicine, 1992)
A species of gram-positive bacteria that is a common soil and water saprophyte.
Virulent bacteriophage and type species of the genus T7-like phages, in the family PODOVIRIDAE, that infects E. coli. It consists of linear double-stranded DNA, terminally redundant, and non-permuted.
A category of nucleic acid sequences that function as units of heredity and which code for the basic instructions for the development, reproduction, and maintenance of organisms.
Separation of particles according to density by employing a gradient of varying densities. At equilibrium each particle settles in the gradient at a point equal to its density. (McGraw-Hill Dictionary of Scientific and Technical Terms, 4th ed)
A series of 7 virulent phages which infect E. coli. The T-even phages T2, T4; (BACTERIOPHAGE T4), and T6, and the phage T5 are called "autonomously virulent" because they cause cessation of all bacterial metabolism on infection. Phages T1, T3; (BACTERIOPHAGE T3), and T7; (BACTERIOPHAGE T7) are called "dependent virulent" because they depend on continued bacterial metabolism during the lytic cycle. The T-even phages contain 5-hydroxymethylcytosine in place of ordinary cytosine in their DNA.
Viruses whose host is Staphylococcus.
Viruses whose host is Pseudomonas. A frequently encountered Pseudomonas phage is BACTERIOPHAGE PHI 6.
A temperate coliphage, in the genus Mu-like viruses, family MYOVIRIDAE, composed of a linear, double-stranded molecule of DNA, which is able to insert itself randomly at any point on the host chromosome. It frequently causes a mutation by interrupting the continuity of the bacterial OPERON at the site of insertion.
Microscopy using an electron beam, instead of light, to visualize the sample, thereby allowing much greater magnification. The interactions of ELECTRONS with specimens are used to provide information about the fine structure of that specimen. In TRANSMISSION ELECTRON MICROSCOPY the reactions of the electrons that are transmitted through the specimen are imaged. In SCANNING ELECTRON MICROSCOPY an electron beam falls at a non-normal angle on the specimen and the image is derived from the reactions occurring above the plane of the specimen.
The property of objects that determines the direction of heat flow when they are placed in direct thermal contact. The temperature is the energy of microscopic motions (vibrational and translational) of the particles of atoms.
The outer protein protective shell of a virus, which protects the viral nucleic acid.
RNA consisting of two strands as opposed to the more prevalent single-stranded RNA. Most of the double-stranded segments are formed from transcription of DNA by intramolecular base-pairing of inverted complementary sequences separated by a single-stranded loop. Some double-stranded segments of RNA are normal in all organisms.
The development of anatomical structures to create the form of a single- or multi-cell organism. Morphogenesis provides form changes of a part, parts, or the whole organism.
The rate dynamics in chemical or physical systems.
A genus of gram-negative, aerobic, rod-shaped bacteria widely distributed in nature. Some species are pathogenic for humans, animals, and plants.
The sum of the weight of all the atoms in a molecule.
Rupture of bacterial cells due to mechanical force, chemical action, or the lytic growth of BACTERIOPHAGES.
Descriptions of specific amino acid, carbohydrate, or nucleotide sequences which have appeared in the published literature and/or are deposited in and maintained by databanks such as GENBANK, European Molecular Biology Laboratory (EMBL), National Biomedical Research Foundation (NBRF), or other sequence repositories.
Ribonucleic acid that makes up the genetic material of viruses.
A species of temperate bacteriophage in the genus P2-like viruses, family MYOVIRIDAE, which infects E. coli. It consists of linear double-stranded DNA with 19-base sticky ends.
Viruses whose host is Streptococcus.
Temperate bacteriophage of the genus INOVIRUS which infects enterobacteria, especially E. coli. It is a filamentous phage consisting of single-stranded DNA and is circularly permuted.
The complete genetic complement contained in a DNA or RNA molecule in a virus.
The spatial arrangement of the atoms of a nucleic acid or polynucleotide that results in its characteristic 3-dimensional shape.
Bacteriophage in the genus T7-like phages, of the family PODOVIRIDAE, which is very closely related to BACTERIOPHAGE T7.
Macromolecular molds for the synthesis of complementary macromolecules, as in DNA REPLICATION; GENETIC TRANSCRIPTION of DNA to RNA, and GENETIC TRANSLATION of RNA into POLYPEPTIDES.
Enzymes that catalyze DNA template-directed extension of the 3'-end of an RNA strand one nucleotide at a time. They can initiate a chain de novo. In eukaryotes, three forms of the enzyme have been distinguished on the basis of sensitivity to alpha-amanitin, and the type of RNA synthesized. (From Enzyme Nomenclature, 1992).
A technique of bacterial typing which differentiates between bacteria or strains of bacteria by their susceptibility to one or more bacteriophages.
A species of temperate bacteriophage in the genus P1-like viruses, family MYOVIRIDAE, which infects E. coli. It is the largest of the COLIPHAGES and consists of double-stranded DNA, terminally redundant, and circularly permuted.
Electron microscopy involving rapid freezing of the samples. The imaging of frozen-hydrated molecules and organelles permits the best possible resolution closest to the living state, free of chemical fixatives or stains.
The transfer of bacterial DNA by phages from an infected bacterium to another bacterium. This also refers to the transfer of genes into eukaryotic cells by viruses. This naturally occurring process is routinely employed as a GENE TRANSFER TECHNIQUE.
A family of BACTERIOPHAGES and ARCHAEAL VIRUSES which are characterized by long, non-contractile tails.

Bacteriophage inactivation at the air-water-solid interface in dynamic batch systems. (1/413)

Bacteriophages have been widely used as surrogates for human enteric viruses in many studies on virus transport and fate. In this investigation, the fates of three bacteriophages, MS2, R17, and phiX174, were studied in a series of dynamic batch experiments. Both MS2 and R17 readily underwent inactivation in batch experiments where solutions of each phage were percolated through tubes packed with varying ratios of glass and Teflon beads. MS2 and R17 inactivation was the result of exposure to destructive forces at the dynamic air-water-solid interface. phiX174, however, did not undergo inactivation in similar studies, suggesting that this phage does not accumulate at air-water interfaces or is not affected by interfacial forces in the same manner. Other batch experiments showed that MS2 and R17 were increasingly inactivated during mixing in polypropylene tubes as the ionic strength of the solution was raised (phiX174 was not affected). By the addition of Tween 80 to suspensions of MS2 and R17, phage inactivation was prevented. Our data suggest that viral inactivation in simple dynamic batch experiments is dependent upon (i) the presence of a dynamic air-water-solid interface (where the solid is a hydrophobic surface), (ii) the ionic strength of the solution, (iii) the concentration of surface active compounds in the solution, and (iv) the type of virus used.  (+info)

Replication fork assembly at recombination intermediates is required for bacterial growth. (2/413)

PriA, a 3' --> 5' DNA helicase, directs assembly of a primosome on some bacteriophage and plasmid DNAs. Primosomes are multienzyme replication machines that contribute both the DNA-unwinding and Okazaki fragment-priming functions at the replication fork. The role of PriA in chromosomal replication is unclear. The phenotypes of priA null mutations suggest that the protein participates in replication restart at recombination intermediates. We show here that PriA promotes replication fork assembly at a D loop, an intermediate formed during initiation of homologous recombination. We also show that DnaC810, encoded by a naturally arising intergenic suppressor allele of the priA2::kan mutation, bypasses the need for PriA during replication fork assembly at D loops in vitro. These findings underscore the essentiality of replication fork restart at recombination intermediates under normal growth conditions in bacteria.  (+info)

Virus passage through track-etch membranes modified by salinity and a nonionic surfactant. (3/413)

Why do viruses sometimes not pass through larger pores in track-etch filters? Increasing the salinity (0.8 to 160 mM Na+) decreased phiX174 and PRD1 passage through track-etch polycarbonate membranes (sodium dodecyl sulfate coated but not polyvinylpyrrolidone coated) and PRD1 passage through polyester membranes. Undiminished passage when 0.1% Tween 80 was added implied that nonionic virus adsorption occurred and indicated that high levels of salinity decreased virus passage by decreasing electrostatic repulsion that prevented adsorption.  (+info)

Different trajectories of parallel evolution during viral adaptation. (4/413)

The molecular basis of adaptation is a major focus of evolutionary biology, yet the dynamic process of adaptation has been explored only piecemeal. Experimental evolution of two bacteriophage lines under strong selection led to over a dozen nucleotide changes genomewide in each replicate. At least 96 percent of the amino acid substitutions appeared to be adaptive, and half the changes in one line also occurred in the other. However, the order of these changes differed between replicates, and parallel substitutions did not reflect the changes with the largest beneficial effects or indicate a common trajectory of adaptation.  (+info)

Evolutionary reversals during viral adaptation to alternating hosts. (5/413)

Experimental adaptation of the bacteriophage phiX174 to a Salmonella host depressed its ability to grow on the traditional Escherichia host, whereas adaptation to Escherichia did not appreciably affect growth on Salmonella. Continued host switching consistently exhibited this pattern. Growth inhibition on Escherichia resulted from two to three substitutions in the major capsid gene. When these phages were forced to grow again on Escherichia, fitness recovery occurred predominantly by reversions at these same sites, rather than by second-site compensatory changes, the more frequently observed mechanism in most microbial systems. The affected residues lie on the virion surface and they alter attachment efficiency, yet they occur in a region distinct from a putative binding region previously identified from X-ray crystallography. These residues not only experienced high rates of evolution in our experiments, but also exhibited high levels of radical amino acid variation among phiX174 and its known relatives, consistent with a history of adaptation involving these sites.  (+info)

Transfer of immune complexes from erythrocyte CR1 to mouse macrophages. (6/413)

We are developing a potential therapeutic approach for removing pathogens from the circulation of primates in which the pathogen is bound to the complement receptor (CR1) on E using a bispecific mAb complex, a heteropolymer (HP). We have used mAb this approach to demonstrate that cleared prototype pathogens are localized to, phagocytosed in, and destroyed in the liver. Extension of this work to a clinical setting will require a detailed understanding of the mechanism by which the E-bound immune complex substrates are transferred to fixed tissue macrophages in the liver, the transfer reaction. Therefore, we examined an in vitro system to study this process using bacteriophage phiX174 as a model pathogen. E containing phiX174 (bound via an anti-CR1/anti-phiX174 HP) were incubated with P388D1 murine macrophages, and the two cell types were separated by centrifugation through Ficoll. Both E and macrophages were then probed and analyzed by RIA or flow cytometry. The results indicate that all three components of the E-bound IC (phiX174, HP, and CR1) were removed from the E and internalized by the macrophages. We found that transfer requires the Fc portion of IgG, because little transfer of phiX174 occurs when it is bound to E CR1 using a HP containing only Fab fragments. These findings, taken in the context of other studies, suggest a general mechanism for the transfer reaction in which Fc receptors facilitate close juxtaposition of the macrophage to the E-bound IC which then allows a macrophage-associated protease to cleave CR1. The released IC are then internalized and processed by the macrophages.  (+info)

Purification and characterization of DnaC810, a primosomal protein capable of bypassing PriA function. (7/413)

Escherichia coli strains lacking PriA are severely compromised in their ability to repair UV-damaged DNA and to perform homologous recombination. These phenotypes arise because of a lack of PriA-directed replication fork assembly at recombination intermediates such as D-loops. Naturally arising suppressor mutations in dnaC restore strains carrying the priA2::kan null allele to wild-type function. We have cloned one such gene, dnaC810, and overexpressed, purified, and characterized the DnaC810 protein. DnaC810 can support a PriA-independent synthesis of phiX174 complementary strand DNA. This can be attributed to its ability, unlike wild-type DnaC, to catalyze a SSB-insensitive general priming reaction with DnaB and DnaG on any SSB-coated single-stranded DNA. Gel mobility shift analysis revealed that DnaC810 could load DnaB directly to SSB-coated single-stranded DNA as well as to D loop DNA. This explains the ability of DnaC810 to bypass the requirement for PriA, PriB, PriC, and DnaT during replication fork assembly at recombination intermediates.  (+info)

Characterization of the binding of spike H protein of bacteriophage phiX174 with receptor lipopolysaccharides. (8/413)

The spike H protein of bacteriophage phiX174 was prepared as a hexa histidine-tagged fusion (HisH). On enzyme-linked plate assaying, HisH was found to bind specifically to the lipopolysaccharides (LPSs) of phiX174-sensitive strains, Escherichia coli C and Salmonella typhimurium Ra chemotype, having the complete oligosaccharide sequence of the R-core on the LPSs. In sharp contrast, HisH bound weakly to the LPSs of phiX174-insensitive strains, i.e. E. coli F583 (Rd(2)) lacking some terminal saccharides and E. coli O111: B4 (smooth strain) having additional O-repeats on the R-core. The fluorescence spectra of HisH changed dose-dependently in the case of the LPS of E. coli C, the intensity increasing and the emission peak shifting to the shorter wavelength side, which was attributable to the hydrophobic interaction of HisH with the LPS. The binding equilibrium was analyzed by fluorometric titration to determine the dissociation constant K(d), 7.02 +/- 0.37 microM, and the Gibbs free energy change DeltaG(0), -29.1 kJ mol(-1) (at 22 degrees C, pH 7.4). Based on the temperature dependence of (K)d in a van't Hoff plot, the standard enthalpy change DeltaH(0) and the entropy change DeltaS(0) were calculated to be +23.7 kJ mol(-1) and 179 J mol(-1) K(-1) at 22 degrees C, respectively, and this binding was thereby concluded to be an entropy-driven reaction.  (+info)

Bacteriophage phi X 174, also known as Phi X 174 or ΦX174, is a bacterial virus that infects the bacterium Escherichia coli (E. coli). It is a small, icosahedral-shaped virus with a diameter of about 30 nanometers and belongs to the family Podoviridae in the order Caudovirales.

Phi X 174 has a single-stranded DNA genome that is circular and consists of 5,386 base pairs. It is one of the smallest viruses known to infect bacteria, and its simplicity has made it a model system for studying bacteriophage biology and molecular biology.

Phi X 174 was first discovered in 1962 by American scientist S.E. Luria and his colleagues. It is able to infect E. coli cells that lack the F-pilus, a hair-like structure on the surface of the bacterial cell. Once inside the host cell, phi X 174 uses the host's machinery to replicate its DNA and produce new viral particles, which are then released from the host cell by lysis, causing the cell to burst open and release the new viruses.

Phi X 174 has been extensively studied for its unique biological properties, including its small size, simple genome, and ability to infect E. coli cells. It has also been used as a tool in molecular biology research, such as in the development of DNA sequencing techniques and the study of gene regulation.

Bacteriophage phi 6, also known as Phi 6 or Pseudomonas phage Phi 6, is a double-stranded RNA virus that infects and replicates within the bacterium Pseudomonas syringae. It is a member of the family Cystoviridae and has an icosahedral head and a tail structure, which allows it to attach to and inject its genetic material into the host cell. Bacteriophage phi 6 is often used as a model system for studying RNA replication and transcription, as well as for understanding the mechanisms of virus-host interactions. It has also been studied as a potential candidate for use in phage therapy, which is the use of bacteriophages to treat bacterial infections.

Bacteriophages, often simply called phages, are viruses that infect and replicate within bacteria. They consist of a protein coat, called the capsid, that encases the genetic material, which can be either DNA or RNA. Bacteriophages are highly specific, meaning they only infect certain types of bacteria, and they reproduce by hijacking the bacterial cell's machinery to produce more viruses.

Once a phage infects a bacterium, it can either replicate its genetic material and create new phages (lytic cycle), or integrate its genetic material into the bacterial chromosome and replicate along with the bacterium (lysogenic cycle). In the lytic cycle, the newly formed phages are released by lysing, or breaking open, the bacterial cell.

Bacteriophages play a crucial role in shaping microbial communities and have been studied as potential alternatives to antibiotics for treating bacterial infections.

Coliphages are viruses that infect and replicate within certain species of bacteria that belong to the coliform group, particularly Escherichia coli (E. coli). These viruses are commonly found in water and soil environments and are frequently used as indicators of fecal contamination in water quality testing. Coliphages are not harmful to humans or animals, but their presence in water can suggest the potential presence of pathogenic bacteria or other microorganisms that may pose a health risk. There are two main types of coliphages: F-specific RNA coliphages and somatic (or non-F specific) DNA coliphages.

Viral DNA refers to the genetic material present in viruses that consist of DNA as their core component. Deoxyribonucleic acid (DNA) is one of the two types of nucleic acids that are responsible for storing and transmitting genetic information in living organisms. Viruses are infectious agents much smaller than bacteria that can only replicate inside the cells of other organisms, called hosts.

Viral DNA can be double-stranded (dsDNA) or single-stranded (ssDNA), depending on the type of virus. Double-stranded DNA viruses have a genome made up of two complementary strands of DNA, while single-stranded DNA viruses contain only one strand of DNA.

Examples of dsDNA viruses include Adenoviruses, Herpesviruses, and Poxviruses, while ssDNA viruses include Parvoviruses and Circoviruses. Viral DNA plays a crucial role in the replication cycle of the virus, encoding for various proteins necessary for its multiplication and survival within the host cell.

DNA viruses are a type of virus that contain DNA (deoxyribonucleic acid) as their genetic material. These viruses replicate by using the host cell's machinery to synthesize new viral components, which are then assembled into new viruses and released from the host cell.

DNA viruses can be further classified based on the structure of their genomes and the way they replicate. For example, double-stranded DNA (dsDNA) viruses have a genome made up of two strands of DNA, while single-stranded DNA (ssDNA) viruses have a genome made up of a single strand of DNA.

Examples of DNA viruses include herpes simplex virus, varicella-zoster virus, human papillomavirus, and adenoviruses. Some DNA viruses are associated with specific diseases, such as cancer (e.g., human papillomavirus) or neurological disorders (e.g., herpes simplex virus).

It's important to note that while DNA viruses contain DNA as their genetic material, RNA viruses contain RNA (ribonucleic acid) as their genetic material. Both DNA and RNA viruses can cause a wide range of diseases in humans, animals, and plants.

Bacillus phages are viruses that infect and replicate within bacteria of the genus Bacillus. These phages, also known as bacteriophages or simply phages, are a type of virus that is specifically adapted to infect and multiply within bacteria. They use the bacterial cell's machinery to produce new copies of themselves, often resulting in the lysis (breakdown) of the bacterial cell. Bacillus phages are widely studied for their potential applications in biotechnology, medicine, and basic research.

Viral proteins are the proteins that are encoded by the viral genome and are essential for the viral life cycle. These proteins can be structural or non-structural and play various roles in the virus's replication, infection, and assembly process. Structural proteins make up the physical structure of the virus, including the capsid (the protein shell that surrounds the viral genome) and any envelope proteins (that may be present on enveloped viruses). Non-structural proteins are involved in the replication of the viral genome and modulation of the host cell environment to favor viral replication. Overall, a thorough understanding of viral proteins is crucial for developing antiviral therapies and vaccines.

Lysogeny is a process in the life cycle of certain viruses, known as bacteriophages or phages, which can infect bacteria. In lysogeny, the viral DNA integrates into the chromosome of the host bacterium and replicates along with it, remaining dormant and not producing any new virus particles. This state is called lysogeny or the lysogenic cycle.

The integrated viral DNA is known as a prophage. The bacterial cell that contains a prophage is called a lysogen. The lysogen can continue to grow and divide normally, passing the prophage onto its daughter cells during reproduction. This dormant state can last for many generations of the host bacterium.

However, under certain conditions such as DNA damage or exposure to UV radiation, the prophage can be induced to excise itself from the bacterial chromosome and enter the lytic cycle. In the lytic cycle, the viral DNA replicates rapidly, producing many new virus particles, which eventually leads to the lysis (breaking open) of the host cell and the release of the newly formed virions.

Lysogeny is an important mechanism for the spread and survival of bacteriophages in bacterial populations. It also plays a role in horizontal gene transfer between bacteria, as genes carried by prophages can be transferred to other bacteria during transduction.

'Escherichia coli' (E. coli) is a type of gram-negative, facultatively anaerobic, rod-shaped bacterium that commonly inhabits the intestinal tract of humans and warm-blooded animals. It is a member of the family Enterobacteriaceae and one of the most well-studied prokaryotic model organisms in molecular biology.

While most E. coli strains are harmless and even beneficial to their hosts, some serotypes can cause various forms of gastrointestinal and extraintestinal illnesses in humans and animals. These pathogenic strains possess virulence factors that enable them to colonize and damage host tissues, leading to diseases such as diarrhea, urinary tract infections, pneumonia, and sepsis.

E. coli is a versatile organism with remarkable genetic diversity, which allows it to adapt to various environmental niches. It can be found in water, soil, food, and various man-made environments, making it an essential indicator of fecal contamination and a common cause of foodborne illnesses. The study of E. coli has contributed significantly to our understanding of fundamental biological processes, including DNA replication, gene regulation, and protein synthesis.

Single-stranded DNA (ssDNA) is a form of DNA that consists of a single polynucleotide chain. In contrast, double-stranded DNA (dsDNA) consists of two complementary polynucleotide chains that are held together by hydrogen bonds.

In the double-helix structure of dsDNA, each nucleotide base on one strand pairs with a specific base on the other strand through hydrogen bonding: adenine (A) with thymine (T), and guanine (G) with cytosine (C). This base pairing provides stability to the double-stranded structure.

Single-stranded DNA, on the other hand, lacks this complementary base pairing and is therefore less stable than dsDNA. However, ssDNA can still form secondary structures through intrastrand base pairing, such as hairpin loops or cruciform structures.

Single-stranded DNA is found in various biological contexts, including viral genomes, transcription bubbles during gene expression, and in certain types of genetic recombination. It also plays a critical role in some laboratory techniques, such as polymerase chain reaction (PCR) and DNA sequencing.

DNA replication is the biological process by which DNA makes an identical copy of itself during cell division. It is a fundamental mechanism that allows genetic information to be passed down from one generation of cells to the next. During DNA replication, each strand of the double helix serves as a template for the synthesis of a new complementary strand. This results in the creation of two identical DNA molecules. The enzymes responsible for DNA replication include helicase, which unwinds the double helix, and polymerase, which adds nucleotides to the growing strands.

I'm sorry for any confusion, but "Cystoviridae" is not a medical term or a term used to describe a human medical condition. It is actually the name of a family of bacteriophages, which are viruses that infect and replicate within bacteria. Cystoviridae viruses have a double-stranded RNA genome and are known to infect certain types of Gram-negative bacteria. They are not associated with human diseases or conditions.

Viral genes refer to the genetic material present in viruses that contains the information necessary for their replication and the production of viral proteins. In DNA viruses, the genetic material is composed of double-stranded or single-stranded DNA, while in RNA viruses, it is composed of single-stranded or double-stranded RNA.

Viral genes can be classified into three categories: early, late, and structural. Early genes encode proteins involved in the replication of the viral genome, modulation of host cell processes, and regulation of viral gene expression. Late genes encode structural proteins that make up the viral capsid or envelope. Some viruses also have structural genes that are expressed throughout their replication cycle.

Understanding the genetic makeup of viruses is crucial for developing antiviral therapies and vaccines. By targeting specific viral genes, researchers can develop drugs that inhibit viral replication and reduce the severity of viral infections. Additionally, knowledge of viral gene sequences can inform the development of vaccines that stimulate an immune response to specific viral proteins.

RNA phages are a type of bacteriophage, which is a virus that infects bacteria. Unlike most other bacteriophages, RNA phages have an RNA genome instead of a DNA genome. These viruses infect and replicate within bacteria that have an RNA genome or those that can incorporate RNA into their replication cycle.

RNA phages are relatively simple in structure, consisting of an icosahedral capsid (protein shell) containing the single-stranded RNA genome. The genome may be either positive-sense (+) or negative-sense (-), depending on whether it can serve directly as messenger RNA (mRNA) for translation or if it must first be transcribed into a complementary RNA strand before translation.

Examples of well-known RNA phages include the MS2, Qβ, and φ6 phages. These viruses have been extensively studied as model systems to understand fundamental principles of RNA biology, virus replication strategies, and host-pathogen interactions. They also have potential applications in biotechnology, such as in the development of RNA-based vaccines and gene therapy vectors.

Bacteriophage T4, also known as T4 phage, is a type of virus that infects and replicates within the bacterium Escherichia coli (E. coli). It is one of the most well-studied bacteriophages and has been used as a model organism in molecular biology research for many decades.

T4 phage has a complex structure, with an icosahedral head that contains its genetic material (DNA) and a tail that attaches to the host cell and injects the DNA inside. The T4 phage genome is around 169 kilobases in length and encodes approximately 289 proteins.

Once inside the host cell, the T4 phage DNA takes over the bacterial machinery to produce new viral particles. The host cell eventually lyses (bursts), releasing hundreds of new phages into the environment. T4 phage is a lytic phage, meaning that it only replicates through the lytic cycle and does not integrate its genome into the host's chromosome.

T4 phage has been used in various applications, including bacterial typing, phage therapy, and genetic engineering. Its study has contributed significantly to our understanding of molecular biology, genetics, and virology.

DNA packaging refers to the way in which DNA molecules are compacted and organized within the nucleus of a eukaryotic cell. In order to fit into the nucleus, which is only a small fraction of the size of the cell, the long DNA molecule must be tightly packed. This is accomplished through a process called "supercoiling," in which the DNA double helix twists and coils upon itself, as well as through its association with histone proteins.

Histones are small, positively charged proteins that bind to the negatively charged DNA molecule, forming structures known as nucleosomes. The DNA wraps around the outside of the histone octamer (a complex made up of eight histone proteins) in a repeating pattern, creating a "bead on a string" structure. These nucleosomes are then coiled and compacted further to form higher-order structures, ultimately resulting in the highly condensed chromatin that is found within the cell nucleus.

Proper DNA packaging is essential for the regulation of gene expression, as well as for the protection and maintenance of genetic information. Abnormalities in DNA packaging have been linked to a variety of diseases, including cancer.

Virus replication is the process by which a virus produces copies or reproduces itself inside a host cell. This involves several steps:

1. Attachment: The virus attaches to a specific receptor on the surface of the host cell.
2. Penetration: The viral genetic material enters the host cell, either by invagination of the cell membrane or endocytosis.
3. Uncoating: The viral genetic material is released from its protective coat (capsid) inside the host cell.
4. Replication: The viral genetic material uses the host cell's machinery to produce new viral components, such as proteins and nucleic acids.
5. Assembly: The newly synthesized viral components are assembled into new virus particles.
6. Release: The newly formed viruses are released from the host cell, often through lysis (breaking) of the cell membrane or by budding off the cell membrane.

The specific mechanisms and details of virus replication can vary depending on the type of virus. Some viruses, such as DNA viruses, use the host cell's DNA polymerase to replicate their genetic material, while others, such as RNA viruses, use their own RNA-dependent RNA polymerase or reverse transcriptase enzymes. Understanding the process of virus replication is important for developing antiviral therapies and vaccines.

A mutation is a permanent change in the DNA sequence of an organism's genome. Mutations can occur spontaneously or be caused by environmental factors such as exposure to radiation, chemicals, or viruses. They may have various effects on the organism, ranging from benign to harmful, depending on where they occur and whether they alter the function of essential proteins. In some cases, mutations can increase an individual's susceptibility to certain diseases or disorders, while in others, they may confer a survival advantage. Mutations are the driving force behind evolution, as they introduce new genetic variability into populations, which can then be acted upon by natural selection.

Adsorption is a process in which atoms, ions, or molecules from a gas, liquid, or dissolved solid accumulate on the surface of a material. This occurs because the particles in the adsorbate (the substance being adsorbed) have forces that attract them to the surface of the adsorbent (the material that the adsorbate is adhering to).

In medical terms, adsorption can refer to the use of materials with adsorptive properties to remove harmful substances from the body. For example, activated charcoal is sometimes used in the treatment of poisoning because it can adsorb a variety of toxic substances and prevent them from being absorbed into the bloodstream.

It's important to note that adsorption is different from absorption, which refers to the process by which a substance is taken up and distributed throughout a material or tissue.

Bacteriophage lambda, often simply referred to as phage lambda, is a type of virus that infects the bacterium Escherichia coli (E. coli). It is a double-stranded DNA virus that integrates its genetic material into the bacterial chromosome as a prophage when it infects the host cell. This allows the phage to replicate along with the bacterium until certain conditions trigger the lytic cycle, during which new virions are produced and released by lysing, or breaking open, the host cell.

Phage lambda is widely studied in molecular biology due to its well-characterized life cycle and genetic structure. It has been instrumental in understanding various fundamental biological processes such as gene regulation, DNA recombination, and lysis-lysogeny decision.

A base sequence in the context of molecular biology refers to the specific order of nucleotides in a DNA or RNA molecule. In DNA, these nucleotides are adenine (A), guanine (G), cytosine (C), and thymine (T). In RNA, uracil (U) takes the place of thymine. The base sequence contains genetic information that is transcribed into RNA and ultimately translated into proteins. It is the exact order of these bases that determines the genetic code and thus the function of the DNA or RNA molecule.

A plasmid is a small, circular, double-stranded DNA molecule that is separate from the chromosomal DNA of a bacterium or other organism. Plasmids are typically not essential for the survival of the organism, but they can confer beneficial traits such as antibiotic resistance or the ability to degrade certain types of pollutants.

Plasmids are capable of replicating independently of the chromosomal DNA and can be transferred between bacteria through a process called conjugation. They often contain genes that provide resistance to antibiotics, heavy metals, and other environmental stressors. Plasmids have also been engineered for use in molecular biology as cloning vectors, allowing scientists to replicate and manipulate specific DNA sequences.

Plasmids are important tools in genetic engineering and biotechnology because they can be easily manipulated and transferred between organisms. They have been used to produce vaccines, diagnostic tests, and genetically modified organisms (GMOs) for various applications, including agriculture, medicine, and industry.

DNA restriction enzymes, also known as restriction endonucleases, are a type of enzyme that cut double-stranded DNA at specific recognition sites. These enzymes are produced by bacteria and archaea as a defense mechanism against foreign DNA, such as that found in bacteriophages (viruses that infect bacteria).

Restriction enzymes recognize specific sequences of nucleotides (the building blocks of DNA) and cleave the phosphodiester bonds between them. The recognition sites for these enzymes are usually palindromic, meaning that the sequence reads the same in both directions when facing the opposite strands of DNA.

Restriction enzymes are widely used in molecular biology research for various applications such as genetic engineering, genome mapping, and DNA fingerprinting. They allow scientists to cut DNA at specific sites, creating precise fragments that can be manipulated and analyzed. The use of restriction enzymes has been instrumental in the development of recombinant DNA technology and the Human Genome Project.

Circular DNA is a type of DNA molecule that forms a closed loop, rather than the linear double helix structure commonly associated with DNA. This type of DNA is found in some viruses, plasmids (small extrachromosomal DNA molecules found in bacteria), and mitochondria and chloroplasts (organelles found in plant and animal cells).

Circular DNA is characterized by the absence of telomeres, which are the protective caps found on linear chromosomes. Instead, circular DNA has a specific sequence where the two ends join together, known as the origin of replication and the replication terminus. This structure allows for the DNA to be replicated efficiently and compactly within the cell.

Because of its circular nature, circular DNA is more resistant to degradation by enzymes that cut linear DNA, making it more stable in certain environments. Additionally, the ability to easily manipulate and clone circular DNA has made it a valuable tool in molecular biology and genetic engineering.

'Bacillus subtilis' is a gram-positive, rod-shaped bacterium that is commonly found in soil and vegetation. It is a facultative anaerobe, meaning it can grow with or without oxygen. This bacterium is known for its ability to form durable endospores during unfavorable conditions, which allows it to survive in harsh environments for long periods of time.

'Bacillus subtilis' has been widely studied as a model organism in microbiology and molecular biology due to its genetic tractability and rapid growth. It is also used in various industrial applications, such as the production of enzymes, antibiotics, and other bioproducts.

Although 'Bacillus subtilis' is generally considered non-pathogenic, there have been rare cases of infection in immunocompromised individuals. It is important to note that this bacterium should not be confused with other pathogenic species within the genus Bacillus, such as B. anthracis (causative agent of anthrax) or B. cereus (a foodborne pathogen).

Bacteriophage T7 is a type of virus that infects and replicates within the bacterium Escherichia coli (E. coli). It is a double-stranded DNA virus that specifically recognizes and binds to the outer membrane of E. coli bacteria through its tail fibers. After attachment, the viral genome is injected into the host cell, where it hijacks the bacterial machinery to produce new phage particles. The rapid reproduction of T7 phages within the host cell often results in lysis, or rupture, of the bacterial cell, leading to the release of newly formed phage virions. Bacteriophage T7 is widely studied as a model system for understanding virus-host interactions and molecular biology.

A gene is a specific sequence of nucleotides in DNA that carries genetic information. Genes are the fundamental units of heredity and are responsible for the development and function of all living organisms. They code for proteins or RNA molecules, which carry out various functions within cells and are essential for the structure, function, and regulation of the body's tissues and organs.

Each gene has a specific location on a chromosome, and each person inherits two copies of every gene, one from each parent. Variations in the sequence of nucleotides in a gene can lead to differences in traits between individuals, including physical characteristics, susceptibility to disease, and responses to environmental factors.

Medical genetics is the study of genes and their role in health and disease. It involves understanding how genes contribute to the development and progression of various medical conditions, as well as identifying genetic risk factors and developing strategies for prevention, diagnosis, and treatment.

Centrifugation, Density Gradient is a medical laboratory technique used to separate and purify different components of a mixture based on their size, density, and shape. This method involves the use of a centrifuge and a density gradient medium, such as sucrose or cesium chloride, to create a stable density gradient within a column or tube.

The sample is carefully layered onto the top of the gradient and then subjected to high-speed centrifugation. During centrifugation, the particles in the sample move through the gradient based on their size, density, and shape, with heavier particles migrating faster and further than lighter ones. This results in the separation of different components of the mixture into distinct bands or zones within the gradient.

This technique is commonly used to purify and concentrate various types of biological materials, such as viruses, organelles, ribosomes, and subcellular fractions, from complex mixtures. It allows for the isolation of pure and intact particles, which can then be collected and analyzed for further study or use in downstream applications.

In summary, Centrifugation, Density Gradient is a medical laboratory technique used to separate and purify different components of a mixture based on their size, density, and shape using a centrifuge and a density gradient medium.

I believe there might be a slight confusion in your question. T-phages are not a medical term, but rather a term used in the field of molecular biology and virology. T-phages refer to specific bacteriophages (viruses that infect bacteria) that belong to the family of Podoviridae and have a tail structure with a contractile sheath.

To be more specific, T-even phages are a group of T-phages that include well-studied bacteriophages like T2, T4, and T6. These phages infect Escherichia coli bacteria and have been extensively researched to understand their life cycles, genetic material packaging, and molecular mechanisms of infection.

In summary, T-phages are not a medical term but rather refer to specific bacteriophages used in scientific research.

Staphylococcus phages do not have a specific medical definition, but I can provide you with some information about both concepts:

1. Staphylococcus: This term refers to a group of bacteria that can cause various infections in humans and animals. The most common species is Staphylococcus aureus, which often colonizes the skin and nasal passages of healthy individuals. However, it can lead to infections when it enters the body through wounds or other breaks in the skin.

2. Phages: These are viruses that infect and kill bacteria. They specifically target and replicate within bacterial cells, using the host's machinery for their reproduction. Once the phage has multiplied sufficiently, it causes the bacterial cell to lyse (burst), releasing new phage particles into the environment. Phages can be specific to certain bacterial species or strains, making them potential alternatives to antibiotics in treating bacterial infections without disrupting the normal microbiota.

When combining these two concepts, Staphylococcus phages refer to viruses that infect and kill Staphylococcus bacteria. These phages can be used as therapeutic agents to treat Staphylococcus infections, particularly those caused by antibiotic-resistant strains like methicillin-resistant Staphylococcus aureus (MRSA). However, it is essential to note that the use of phages as a treatment option is still an experimental approach and requires further research before becoming a widely accepted therapeutic strategy.

Pseudomonas phages are viruses that infect and replicate within bacteria of the genus Pseudomonas. These phages are important in the study of Pseudomonas species, which include several significant human pathogens such as P. aeruginosa. Phages can be used for therapeutic purposes to treat bacterial infections, including those caused by Pseudomonas. Additionally, they are also useful tools in molecular biology and genetic research.

It's worth noting that while "Pseudomonas phages" refers specifically to phages that infect Pseudomonas bacteria, the term "phage" on its own is used to describe any virus that infects and replicates within a bacterial host.

Bacteriophage mu, also known as Mucoid Bacteriophage or Phage Mu, is a type of bacterial virus that infects and replicates within the genetic material of specific bacteria, primarily belonging to the genus Pseudomonas. This phage is characterized by its unique ability to integrate its genome into the host bacterium's chromosome at random locations, which can result in mutations or alterations in the bacterial genome.

Phage Mu has a relatively large genome and encodes various proteins that facilitate its replication, packaging, and release from the host cell. When Phage Mu infects a bacterium, it injects its genetic material into the host cytoplasm, where it circularizes and then integrates itself into the host's chromosome via a process called transposition. This integration can lead to significant changes in the host bacterium's genome, potentially altering its phenotype or even converting it into a lysogenic state, where the phage remains dormant within the host cell until environmental conditions trigger its replication and release.

Phage Mu is widely used as a tool for genetic research due to its ability to introduce random mutations into bacterial genomes, facilitating the study of gene function and regulation. Additionally, Phage Mu has been explored for potential applications in phage therapy, where it could be used to target and eliminate specific bacterial pathogens without adversely affecting other beneficial microorganisms present in the host organism or environment.

Electron microscopy (EM) is a type of microscopy that uses a beam of electrons to create an image of the sample being examined, resulting in much higher magnification and resolution than light microscopy. There are several types of electron microscopy, including transmission electron microscopy (TEM), scanning electron microscopy (SEM), and reflection electron microscopy (REM).

In TEM, a beam of electrons is transmitted through a thin slice of the sample, and the electrons that pass through the sample are focused to form an image. This technique can provide detailed information about the internal structure of cells, viruses, and other biological specimens, as well as the composition and structure of materials at the atomic level.

In SEM, a beam of electrons is scanned across the surface of the sample, and the electrons that are scattered back from the surface are detected to create an image. This technique can provide information about the topography and composition of surfaces, as well as the structure of materials at the microscopic level.

REM is a variation of SEM in which the beam of electrons is reflected off the surface of the sample, rather than scattered back from it. This technique can provide information about the surface chemistry and composition of materials.

Electron microscopy has a wide range of applications in biology, medicine, and materials science, including the study of cellular structure and function, disease diagnosis, and the development of new materials and technologies.

Temperature, in a medical context, is a measure of the degree of hotness or coldness of a body or environment. It is usually measured using a thermometer and reported in degrees Celsius (°C), degrees Fahrenheit (°F), or kelvin (K). In the human body, normal core temperature ranges from about 36.5-37.5°C (97.7-99.5°F) when measured rectally, and can vary slightly depending on factors such as time of day, physical activity, and menstrual cycle. Elevated body temperature is a common sign of infection or inflammation, while abnormally low body temperature can indicate hypothermia or other medical conditions.

A capsid is the protein shell that encloses and protects the genetic material of a virus. It is composed of multiple copies of one or more proteins that are arranged in a specific structure, which can vary in shape and symmetry depending on the type of virus. The capsid plays a crucial role in the viral life cycle, including protecting the viral genome from host cell defenses, mediating attachment to and entry into host cells, and assisting with the assembly of new virus particles during replication.

I'm happy to help! However, it seems there might be a slight misunderstanding in your question. RNA, or ribonucleic acid, is typically single-stranded. Unlike DNA, which is double-stranded and forms a double helix, RNA usually exists as a single strand of nucleotides.

There are exceptions to this rule, such as certain types of RNA molecules that can form double-stranded structures in specific contexts. For example:

1. Double-Stranded RNA (dsRNA) viruses: These viruses have genomes made entirely of RNA, which is double-stranded throughout or partially double-stranded. The dsRNA viruses include important pathogens such as rotaviruses and reoviruses.
2. Hairpin loops in RNA structures: Some single-stranded RNA molecules can fold back on themselves to form short double-stranded regions, called hairpin loops, within their overall structure. These are often found in ribosomal RNA (rRNA), transfer RNA (tRNA), and messenger RNA (mRNA) molecules.

So, while 'double-stranded RNA' is not a standard medical definition for RNA itself, there are specific instances where RNA can form double-stranded structures as described above.

Morphogenesis is a term used in developmental biology and refers to the process by which cells give rise to tissues and organs with specific shapes, structures, and patterns during embryonic development. This process involves complex interactions between genes, cells, and the extracellular environment that result in the coordinated movement and differentiation of cells into specialized functional units.

Morphogenesis is a dynamic and highly regulated process that involves several mechanisms, including cell proliferation, death, migration, adhesion, and differentiation. These processes are controlled by genetic programs and signaling pathways that respond to environmental cues and regulate the behavior of individual cells within a developing tissue or organ.

The study of morphogenesis is important for understanding how complex biological structures form during development and how these processes can go awry in disease states such as cancer, birth defects, and degenerative disorders.

In the context of medicine and pharmacology, "kinetics" refers to the study of how a drug moves throughout the body, including its absorption, distribution, metabolism, and excretion (often abbreviated as ADME). This field is called "pharmacokinetics."

1. Absorption: This is the process of a drug moving from its site of administration into the bloodstream. Factors such as the route of administration (e.g., oral, intravenous, etc.), formulation, and individual physiological differences can affect absorption.

2. Distribution: Once a drug is in the bloodstream, it gets distributed throughout the body to various tissues and organs. This process is influenced by factors like blood flow, protein binding, and lipid solubility of the drug.

3. Metabolism: Drugs are often chemically modified in the body, typically in the liver, through processes known as metabolism. These changes can lead to the formation of active or inactive metabolites, which may then be further distributed, excreted, or undergo additional metabolic transformations.

4. Excretion: This is the process by which drugs and their metabolites are eliminated from the body, primarily through the kidneys (urine) and the liver (bile).

Understanding the kinetics of a drug is crucial for determining its optimal dosing regimen, potential interactions with other medications or foods, and any necessary adjustments for special populations like pediatric or geriatric patients, or those with impaired renal or hepatic function.

"Pseudomonas" is a genus of Gram-negative, rod-shaped bacteria that are widely found in soil, water, and plants. Some species of Pseudomonas can cause disease in animals and humans, with P. aeruginosa being the most clinically relevant as it's an opportunistic pathogen capable of causing various types of infections, particularly in individuals with weakened immune systems.

P. aeruginosa is known for its remarkable ability to resist many antibiotics and disinfectants, making infections caused by this bacterium difficult to treat. It can cause a range of healthcare-associated infections, such as pneumonia, bloodstream infections, urinary tract infections, and surgical site infections. In addition, it can also cause external ear infections and eye infections.

Prompt identification and appropriate antimicrobial therapy are crucial for managing Pseudomonas infections, although the increasing antibiotic resistance poses a significant challenge in treatment.

Molecular weight, also known as molecular mass, is the mass of a molecule. It is expressed in units of atomic mass units (amu) or daltons (Da). Molecular weight is calculated by adding up the atomic weights of each atom in a molecule. It is a useful property in chemistry and biology, as it can be used to determine the concentration of a substance in a solution, or to calculate the amount of a substance that will react with another in a chemical reaction.

Bacteriolysis is the breaking down or destruction of bacterial cells. This process can occur naturally or as a result of medical treatment, such as when antibiotics target and destroy bacteria by disrupting their cell walls. The term "bacteriolysis" specifically refers to the breakdown of the bacterial cell membrane, which can lead to the release of the contents of the bacterial cell and ultimately result in the death of the organism.

Molecular sequence data refers to the specific arrangement of molecules, most commonly nucleotides in DNA or RNA, or amino acids in proteins, that make up a biological macromolecule. This data is generated through laboratory techniques such as sequencing, and provides information about the exact order of the constituent molecules. This data is crucial in various fields of biology, including genetics, evolution, and molecular biology, allowing for comparisons between different organisms, identification of genetic variations, and studies of gene function and regulation.

A viral RNA (ribonucleic acid) is the genetic material found in certain types of viruses, as opposed to viruses that contain DNA (deoxyribonucleic acid). These viruses are known as RNA viruses. The RNA can be single-stranded or double-stranded and can exist as several different forms, such as positive-sense, negative-sense, or ambisense RNA. Upon infecting a host cell, the viral RNA uses the host's cellular machinery to translate the genetic information into proteins, leading to the production of new virus particles and the continuation of the viral life cycle. Examples of human diseases caused by RNA viruses include influenza, COVID-19 (SARS-CoV-2), hepatitis C, and polio.

Bacteriophage P2 is a type of virus that infects and replicates within a specific bacterium, Escherichia coli (E. coli). It's a double-stranded DNA virus that was first isolated in the 1950s. Bacteriophage P2 is known for its ability to integrate its genetic material into the host bacterium's chromosome and establish lysogeny, where it can remain dormant until environmental conditions trigger its replication.

Bacteriophage P2 has been extensively studied as a model system in molecular biology due to its unique life cycle and genetic characteristics. It has contributed significantly to our understanding of various biological processes such as DNA replication, transcription regulation, and lysogeny. However, it's important to note that bacteriophage P2 is not typically used for medical purposes like treating bacterial infections.

I'm sorry for any confusion, but "Streptococcus Phages" is not a standard medical term. The term "Streptococcus" refers to a genus of gram-positive bacteria that can cause various infections in humans, such as strep throat and skin infections. A "phage," on the other hand, is a virus that infects and replicates within bacteria.

Therefore, if you are referring to bacteriophages that infect Streptococcus bacteria, then the term would be "Streptococcus phages" or more specifically, the name of the particular phage species that infect Streptococcus bacteria (e.g., Streptococcus phage C1, Streptococcus phage Φ29). However, it's important to note that there are many different types of bacteriophages that can infect various strains of Streptococcus bacteria, so the specific phage would need to be identified.

Bacteriophage M13 is a type of bacterial virus that infects and replicates within the bacterium Escherichia coli (E. coli). It is a filamentous phage, meaning it has a long, thin, and flexible structure. The M13 phage specifically infects only the F pili of E. coli bacteria, which are hair-like appendages found on the surface of certain strains of E. coli.

Once inside the host cell, the M13 phage uses the bacterial machinery to produce new viral particles, or progeny phages, without killing the host cell. The phage genome is made up of a single-stranded circular DNA molecule that encodes for about 10 genes. These genes are involved in various functions such as replication, packaging, and assembly of the phage particles.

Bacteriophage M13 is widely used in molecular biology research due to its ability to efficiently incorporate foreign DNA sequences into its genome. This property has been exploited for a variety of applications, including DNA sequencing, gene cloning, and protein expression. The M13 phage can display foreign peptides or proteins on the surface of its coat protein, making it useful for screening antibodies or identifying ligands in phage display technology.

A viral genome is the genetic material (DNA or RNA) that is present in a virus. It contains all the genetic information that a virus needs to replicate itself and infect its host. The size and complexity of viral genomes can vary greatly, ranging from a few thousand bases to hundreds of thousands of bases. Some viruses have linear genomes, while others have circular genomes. The genome of a virus also contains the information necessary for the virus to hijack the host cell's machinery and use it to produce new copies of the virus. Understanding the genetic makeup of viruses is important for developing vaccines and antiviral treatments.

Nucleic acid conformation refers to the three-dimensional structure that nucleic acids (DNA and RNA) adopt as a result of the bonding patterns between the atoms within the molecule. The primary structure of nucleic acids is determined by the sequence of nucleotides, while the conformation is influenced by factors such as the sugar-phosphate backbone, base stacking, and hydrogen bonding.

Two common conformations of DNA are the B-form and the A-form. The B-form is a right-handed helix with a diameter of about 20 Å and a pitch of 34 Å, while the A-form has a smaller diameter (about 18 Å) and a shorter pitch (about 25 Å). RNA typically adopts an A-form conformation.

The conformation of nucleic acids can have significant implications for their function, as it can affect their ability to interact with other molecules such as proteins or drugs. Understanding the conformational properties of nucleic acids is therefore an important area of research in molecular biology and medicine.

Bacteriophage T3 is a type of virus that infects and replicates within specific bacteria, particularly Escherichia coli (E. coli) strains that have the F+ fertility factor. It is a double-stranded DNA bacteriophage with an icosahedral head and a contractile tail. The T3 phage binds to the bacterial host using its tail fibers, injects its genetic material into the cell, and hijacks the host's machinery to produce more viral particles.

After replicating, the new phages are assembled, and the bacterial cell eventually lyses, releasing the progeny phages to infect other susceptible bacteria. Bacteriophage T3 is known for its rapid replication cycle and precise host recognition, making it a valuable tool in molecular biology research.

A genetic template refers to the sequence of DNA or RNA that contains the instructions for the development and function of an organism or any of its components. These templates provide the code for the synthesis of proteins and other functional molecules, and determine many of the inherited traits and characteristics of an individual. In this sense, genetic templates serve as the blueprint for life and are passed down from one generation to the next through the process of reproduction.

In molecular biology, the term "template" is used to describe the strand of DNA or RNA that serves as a guide or pattern for the synthesis of a complementary strand during processes such as transcription and replication. During transcription, the template strand of DNA is transcribed into a complementary RNA molecule, while during replication, each parental DNA strand serves as a template for the synthesis of a new complementary strand.

In genetic engineering and synthetic biology, genetic templates can be manipulated and modified to introduce new functions or alter existing ones in organisms. This is achieved through techniques such as gene editing, where specific sequences in the genetic template are targeted and altered using tools like CRISPR-Cas9. Overall, genetic templates play a crucial role in shaping the structure, function, and evolution of all living organisms.

DNA-directed RNA polymerases are enzymes that synthesize RNA molecules using a DNA template in a process called transcription. These enzymes read the sequence of nucleotides in a DNA molecule and use it as a blueprint to construct a complementary RNA strand.

The RNA polymerase moves along the DNA template, adding ribonucleotides one by one to the growing RNA chain. The synthesis is directional, starting at the promoter region of the DNA and moving towards the terminator region.

In bacteria, there is a single type of RNA polymerase that is responsible for transcribing all types of RNA (mRNA, tRNA, and rRNA). In eukaryotic cells, however, there are three different types of RNA polymerases: RNA polymerase I, II, and III. Each type is responsible for transcribing specific types of RNA.

RNA polymerases play a crucial role in gene expression, as they link the genetic information encoded in DNA to the production of functional proteins. Inhibition or mutation of these enzymes can have significant consequences for cellular function and survival.

Bacteriophage typing is a laboratory method used to identify and differentiate bacterial strains based on their susceptibility to specific bacteriophages, which are viruses that infect and replicate within bacteria. In this technique, a standard set of bacteriophages with known host ranges are allowed to infect and form plaques on a lawn of bacterial cells grown on a solid medium, such as agar. The pattern and number of plaques formed are then used to identify the specific bacteriophage types that are able to infect the bacterial strain, providing a unique "fingerprint" or profile that can be used for typing and differentiating different bacterial strains.

Bacteriophage typing is particularly useful in epidemiological studies, as it can help track the spread of specific bacterial clones within a population, monitor antibiotic resistance patterns, and provide insights into the evolution and ecology of bacterial pathogens. It has been widely used in the study of various bacterial species, including Staphylococcus aureus, Salmonella enterica, and Mycobacterium tuberculosis, among others.

Bacteriophage P1 is a type of bacterial virus that infects and replicates within a specific host, which is the bacterium Escherichia coli (E. coli). It is a double-stranded DNA virus that can integrate its genetic material into the chromosome of the host bacterium and replicate along with it (lysogenic cycle), or it can choose to reproduce independently by causing the lysis (breaking open) of the host cell (lytic cycle).

Bacteriophage P1 is known for its ability to package its DNA into large, head-full structures, and it has been widely studied as a model system for understanding bacterial genetics, virus-host interactions, and DNA packaging mechanisms. It also serves as a valuable tool in molecular biology for various applications such as cloning, mapping, and manipulating DNA.

Cryo-electron microscopy (Cryo-EM) is a type of electron microscopy where the sample is studied at cryogenic temperatures, typically liquid nitrogen temperatures. This technique is used to investigate the structure and shape of biological molecules and complexes, viruses, and other nanoscale particles.

In Cryo-EM, the sample is rapidly frozen to preserve its natural structure and then imaged using a beam of electrons. The images are collected at different angles and then computationally combined to generate a 3D reconstruction of the sample. This technique allows researchers to visualize biological structures in their native environment with near-atomic resolution, providing valuable insights into their function and behavior.

Cryo-EM has become an increasingly popular tool in structural biology due to its ability to image large and complex structures that are difficult or impossible to crystallize for X-ray crystallography. It has been used to determine the structures of many important biological molecules, including membrane proteins, ribosomes, viruses, and protein complexes involved in various cellular processes.

Genetic transduction is a process in molecular biology that describes the transfer of genetic material from one bacterium to another by a viral vector called a bacteriophage (or phage). In this process, the phage infects one bacterium and incorporates a portion of the bacterial DNA into its own genetic material. When the phage then infects a second bacterium, it can transfer the incorporated bacterial DNA to the new host. This can result in the horizontal gene transfer (HGT) of traits such as antibiotic resistance or virulence factors between bacteria.

There are two main types of transduction: generalized and specialized. In generalized transduction, any portion of the bacterial genome can be packaged into the phage particle, leading to a random assortment of genetic material being transferred. In specialized transduction, only specific genes near the site where the phage integrates into the bacterial chromosome are consistently transferred.

It's important to note that genetic transduction is not to be confused with transformation or conjugation, which are other mechanisms of HGT in bacteria.

Siphoviridae is a family of tailed bacteriophages, which are viruses that infect and replicate within bacteria. The members of this family are characterized by their long, non-contractile tails, which are typically around 100-1000 nanometers in length. The tail fibers at the end of the tail are used to recognize and attach to specific receptors on the surface of bacterial cells.

The Siphoviridae family includes many well-known bacteriophages, such as the lambda phage that infects Escherichia coli bacteria. The genetic material of Siphoviridae viruses is double-stranded DNA, which is packaged inside an icosahedral capsid (the protein shell of the virus).

It's worth noting that Siphoviridae is one of the five families in the order Caudovirales, which includes all tailed bacteriophages. The other four families are Myoviridae, Podoviridae, Herelleviridae, and Ackermannviridae.

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Fiers W, Sinsheimer RL (October 1962). "The structure of the DNA of bacteriophage phi-X174. III. Ultracentrifugal evidence for ... January 1992). "Atomic structure of single-stranded DNA bacteriophage phi X174 and its functional implications". Nature. 355 ( ... A protein of bacteriophage phi X174 into an ATT codon yields a viable phage indicating that A protein is not essential for phi ... February 1977). "Nucleotide sequence of bacteriophage phi X174 DNA". Nature. 265 (5596): 687-95. Bibcode:1977Natur.265..687S. ...
Bacteriophage Phi X 174 50% * Mesenteric microbiology and inflammatory bowel disease: improved understanding due to ...
Bacteriophages phi×174= 12 pentameres. *TYMV (turnip yellow mosaic virus) = 32 capsomeres ... A. Bacteriophages or Bacterial viruses : viruses whose host are bacterial cells, are called bacteriophages or phages ( phage ... T4 bacteriophage is a large- sized viruses. Its shape is tadpoles like. It has head, short neck with whiskers and a long ... Examples- T-even bacteriophages such as T2, T4, T6, etc., which infect E. Coli ( Escherichia coli) and are also known as ...
The selection of bacterial host cells that are temperature-sensitive in their replication of bacteriophage phi-X-174 (English) ... The process of infection with bacteriophage phi-X174. IV. Replication of the viral DNA in a synchronized infection ... The selection of bacterial host cells that are temperature-sensitive in their replication of bacteriophage φX174 (English) ... The selection of bacterial host cells that are temperature-sensitive in their replication of bacteriophage φX174. scientific ...
The photocatalytic air purifier can effectively remove the atomized virus particles of the bacteriophage Phi-X 174. More than ... Toxicology 1994; 89: 161-174. [Article] [CrossRef] [PubMed] [Google Scholar] * Atkinson R. Atmospheric chemistry of VOCs and NO ... J Hazard Mater 2010; 174: 375-379. [Article] [CrossRef] [PubMed] [Google Scholar] ... Appl Catal B-Environ 2015; 174-175: 515-525. [Article] [CrossRef] [Google Scholar] ...
1,0μm size) and phi-X 174 bacteriophage virus (approx. 0,027μm size).. KC Mask VBF99.9 filtering half-mask is CE certified, ...
No penetration of Phi-X-174 bacteriophage after testing in accordance with ASTM F 1671. ...
Intertek has demonstrated PECO technologys ability to reduce the concentration of Phi X 174 (a proxy virus to SARS-CoV-2) by ... has shown Molekules air purification technology to reduce MS2 bacteriophage (a COVID-19 proxy virus) by up to 99.99 percent ...
Test method using Phi-X 174 bacteriophage ...
Then, in 1977, Sanger used this system to deduce the DNA sequence of the bacteriophage Phi X 174 (ΦX174), the first complete ...
... borne pathogens using bacteriophage Phi‐X 174) standard at minimum exposure pressure of 1.75kPa (class 2) (or equivalent ...
Phi X 174. The phi X 174 (or ΦX174) bacteriophage is a virus and was the first DNA-based genome to be sequenced. This work was ... This bacteriophage has a [+] circular single-stranded DNA genome of 5386 nucleotides encoding 11 proteins. Of these 11 genes, ... This page contains text from Wikipedia, the Free Encyclopedia - https://wn.com/Phi_X_174 ...
Nucleotide sequence of bacteriophage phi X174 DNA. Nature. 265(5596):687-95. DOI: http://dx.doi.org/10.1038/265687a0 [ Links ] ... As proof of concept, his team sequenced the genome of a bacteriophage Sanger et al.20. It was a very small genome, but it was a ... 9. Hershey AD, Chase M. Independent functions of viral protein and nucleic acid in growth of bacteriophage. J Gen Physiol. 1952 ... This discovery was further confirmed by Alfred Hershey and Martha Chase when they showed that bacteriophages inject their DNA ...
Sinsheimer, R.L. 1969: The process of infection with bacterio phage phi x 174 xxv studies with bacterio phage phi x 174 mutants ... Sinsheimer, R.L. 1969: The process of infection with bacterio phage phi x 174 xxvi transfer of the parental dna of bacterio ... Summers, W.C. 1970: The process of infection with coli phage t 7 part 4 stability of rna in bacterio phage infected cells. ... phage phi x 174 into progeny bacterio phage particles escherichia coli. Journal Of Molecular Biology: 641-654 ...
Bacteriophages: Nature and Exploitation - Summary - powered by RegOnline *↑ C. Martin (1988) The Application of Bacteriophage ... A colored electron micrograph of multiple bacteriophages. An electron micrograph of bacteriophages attached to a bacterial cell ... A bacteriophage (from bacteria and Greek phagein, to eat) is any one of a number of viruses that infect bacteria. The term ... Bacteriophages may have a lytic cycle or a lysogenic cycle, but a few viruses are capable of carrying out both. With lytic ...
Bacteriophages - Bacteriophage lambda * Bacteriophages - Bacteriophage phi X 174 * Biochemical Phenomena - Nucleic Acid ...
Nucleotide sequence of bacteriophage φX174 DNA. scientific article. *Nucleotide sequence of bacteriophage phi X174 DNA ... Gene F of bacteriophage phiX174. Correlation of nucleotide sequences from the DNA and amino acid sequences from the gene ... Bacteriophage phiX174 DNA synthesis in a replication-deficient host: determination of the origin of phiX DNA replication ... The nucleotide sequence of a DNA fragment, 71 base pairs in length, near the origin of DNA replication of bacteriophage 0X174 ...
Phage phi 11 orf19 protein homolog. protein_id,ABF73249.1, gi,104641941. 25. 12201. 12560. 360. +. 0. Phage phi 11 orf21 ... Hypothetical protein, SAV0878 homolog [SA bacteriophages 11, Mu50B]. protein_id,ABF73260.1, gi,104641952. ... Current Assignment: Phage phi 11 orf21 protein homolog Translate Function Assignments. Context on contig DQ530362 from base ... Phage phi 11 orf14 protein homolog. protein_id,ABF73242.1, gi,104641934. 18. 9588. 8731. 858. -. 105. Phage protein. protein_id ...
Filters: Keyword is Bacteriophage phi X 174 [Clear All Filters]. 1999. Liu J, Xu L, Sandler SJ, Marians KJ. 1999. Replication ...
Bacteriophage P1 [B04.123.205.300] * Bacteriophage P2 [B04.123.205.305] * Bacteriophage phi X 174 [B04.123.205.320] ... Bacteriophages [B04.123] * Coliphages [B04.123.205] * Bacteriophage HK022 [B04.123.205.200] * Bacteriophage lambda [B04.123. ... Bacteriophages [B04.123] * Inoviridae [B04.123.370] * Inovirus [B04.123.370.400] * Bacteriophage IKe [B04.123.370.400.240] ... Bacteriophage M13 Preferred Term Term UI T051074. Date01/01/1999. LexicalTag NON. ThesaurusID NLM (1993). ...
Des virus à structures multicouches différentes (Phi X 174, PRD1, MS2) ont également fait lobjet dinvestigation en termes de ... Les résultats montrent la séquence suivante concernant la charge électrostatique Phi X 174 , PRD1 , MS2 (MS2 étant le plus ... Phi X 174,PRD1,MS2. A positive correlation between these properties and adhesion capacities onto charged surfaces and onto ...
... complying with FDA Protocols in a FDA Certified Compliant Laboratory Net Log Reduction Phi-X174 of Bacteriophage Virus ... complying with FDA Protocols in a FDA Certified Compliant Laboratory Net Log Reduction of MS2 Bacteriophage Virus Bioaerosol ...
Bacteriophage phi 6 B4.123.230.70 Badnavirus B4.715.68 Bahrain Z1.586.500.175 Balloon Embolectomy E5.157.32 Balloon Occlusion ... E5.318.308.980.438.580.174 N2.421.143.827.233.443.62 L1.280.960.500.580.174 N5.715.360.300.375.500.174 N5.715.360.300.800.438. ... K1.752.566.479.174 K1.752.566.479.120 N5.350.835 Hunger G7.610.390 G7.203.650.390 Huntington Disease F3.87.250.400 F3.615. ... D12.776.260.698.750.350.174 D12.776.930.669.750.350.174 Estrogen Receptor beta D12.776.260.698.750.350.262 D12.776.930.669. ...
Bacteriophage phi 6 B4.123.230.70 Badnavirus B4.715.68 Bahrain Z1.586.500.175 Balloon Embolectomy E5.157.32 Balloon Occlusion ... E5.318.308.980.438.580.174 N2.421.143.827.233.443.62 L1.280.960.500.580.174 N5.715.360.300.375.500.174 N5.715.360.300.800.438. ... K1.752.566.479.174 K1.752.566.479.120 N5.350.835 Hunger G7.610.390 G7.203.650.390 Huntington Disease F3.87.250.400 F3.615. ... D12.776.260.698.750.350.174 D12.776.930.669.750.350.174 Estrogen Receptor beta D12.776.260.698.750.350.262 D12.776.930.669. ...
Bacteriophage phi 6 B4.123.230.70 Badnavirus B4.715.68 Bahrain Z1.586.500.175 Balloon Embolectomy E5.157.32 Balloon Occlusion ... E5.318.308.980.438.580.174 N2.421.143.827.233.443.62 L1.280.960.500.580.174 N5.715.360.300.375.500.174 N5.715.360.300.800.438. ... K1.752.566.479.174 K1.752.566.479.120 N5.350.835 Hunger G7.610.390 G7.203.650.390 Huntington Disease F3.87.250.400 F3.615. ... D12.776.260.698.750.350.174 D12.776.930.669.750.350.174 Estrogen Receptor beta D12.776.260.698.750.350.262 D12.776.930.669. ...

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