A novel method for SNP detection using a new duplex-specific nuclease from crab hepatopancreas. (9/61)

We have characterized a novel nuclease from the Kamchatka crab, designated duplex-specific nuclease (DSN). DSN displays a strong preference for cleaving double-stranded DNA and DNA in DNA-RNA hybrid duplexes, compared to single-stranded DNA. Moreover, the cleavage rate of short, perfectly matched DNA duplexes by this enzyme is essentially higher than that for nonperfectly matched duplexes of the same length. Thus, DSN differentiates between one-nucleotide variations in DNA. We developed a novel assay for single nucleotide polymorphism (SNP) detection based on this unique property, termed "duplex-specific nuclease preference" (DSNP). In this innovative assay, the DNA region containing the SNP site is amplified and the PCR product mixed with signal probes (FRET-labeled short sequence-specific oligonucleotides) and DSN. During incubation, only perfectly matched duplexes between the DNA template and signal probe are cleaved by DSN to generate sequence-specific fluorescence. The use of FRET-labeled signal probes coupled with the specificity of DSN presents a simple and efficient method for detecting SNPs. We have employed the DSNP assay for the typing of SNPs in methyltetrahydrofolate reductase, prothrombin and p53 genes on homozygous and heterozygous genomic DNA.  (+info)

Power of shell-rapping signals influences physiological costs and subsequent decisions during hermit crab fights. (10/61)

Understanding the costs of signals used in fights is the key to understanding decisions made by contestants. Hermit crabs use shell rapping. This is a clearly defined agonistic signal, which can be quantified in temporal terms and in the power of the key shell-rapping signal component. We examine the relationship between the power expended by attacking hermit crabs and their consequent lactate levels. High power expenditure over the whole fight leads to high lactate, and attackers give up when lactate is high. Some defenders give up early in fights, particularly if the power of raps in early bouts they receive is high. These defenders and those not allowed to fight have low glucose, but those that successfully resist eviction have high glucose. Glucose is mobilized in an attempt to resist; nevertheless, some defenders that attempt resistance are still evicted by persistent attackers. Thus, early power of the signal is a major determinant of success for attackers, albeit at a cost. These data show the link between power, repetition of a signal, metabolic consequences and decisions of contestants in fights. The different activities, decisions and costs of the two roles are not adequately described by existing models of contests.  (+info)

Nutrient loading and consumers: agents of change in open-coast macrophyte assemblages. (11/61)

Human activities are significantly altering nutrient regimes and the abundance of consumers in coastal ecosystems. A field experiment in an open-coast, upwelling ecosystem showed that small increases in nutrients increased the biomass and evenness of tide pool macrophytes where consumer abundance and nutrient loading rates were low. Consumers, when abundant, had negative effects on the diversity and biomass of macrophytes. Nutrient loading increases and consumers are less abundant and efficient as wave exposure increases along open coastlines. Experimentally reversing the natural state of nutrient supply and consumer pressure at a wave-protected site to match wave-exposed sites caused the structure of the macrophyte assemblage to converge on that found naturally in wave-exposed pools. The increases in evenness and abundance were driven by increases in structurally complex functional groups. In contrast, increased nutrient loading in semienclosed marine or estuarine ecosystems is typically associated with declines in macrophyte diversity because of increases in structurally simple and opportunistic functional groups. If nutrient concentration of upwelled waters changes with climatic warming or increasing frequency of El Ninos, as predicted by some climate models, these results suggest that macrophyte abundance and evenness along wave-swept open-coasts will also change. Macrophytes represent a significant fraction of continental shelf production and provide important habitat for many marine species. The combined effects of shifting nutrient regimes and overexploitation of consumers may have unexpected consequences for the structure and functioning of open-coast communities.  (+info)

Collagenolytic serine protease PC and trypsin PC from king crab Paralithodes camtschaticus: cDNA cloning and primary structure of the enzymes. (12/61)

BACKGROUND: In this paper, we describe cDNA cloning of a new anionic trypsin and a collagenolytic serine protease from king crab Paralithodes camtschaticus and the elucidation of their primary structures. Constructing the phylogenetic tree of these enzymes was undertaken in order to prove the evolutionary relationship between them. RESULTS: The mature trypsin PC and collagenolytic protease PC contain 237 (Mcalc 24.8 kDa) and 226 amino acid residues (Mcalc 23.5 kDa), respectively. Alignments of their amino acid sequences revealed a high degree of the trypsin PC identity to the trypsin from Penaeus vannamei (approximately 70%) and of the collagenolytic protease PC identity to the collagenase from fiddler crab Uca pugilator (76%). The phylogenetic tree of these enzymes was constructed. CONCLUSIONS: Primary structures of the two mature enzymes from P. camtschaticus were obtained and compared with those of other proteolytic proteins, including some enzymes from brachyurans. A phylogenetic analysis was also carried out. These comparisons revealed that brachyurins are closely related to their vertebrate and bacterial congeners, occupy an intermediate position between them, and their study significantly contributes to the understanding of the evolution and function of serine proteases.  (+info)

Daily activity of four tropical intertidal hermit crabs from southeastern Brazil. (13/61)

This study describes the daily activity in a simulated high tide situation of four species of hermit crabs (Pagurus criniticornis, Clibanarius antillensis, C. sclopetarius, and C. vittatus) that coexist in an intertidal flat in southeastern Brazil. Observations were done in two-hour intervals during two subsequent days (48 h) in three replicate pools with thirty crabs each. Among species (between and within genera) there was an evident variation in activity patterns, of which three could be distinguished. The circadian activity patterns of C. antillensis and C. vittatus could be characterized as evening and nocturnal, with resting peaks during the morning and afternoon. The circadian activity pattern of C. sclopetarius was characterized by two marked peaks of inactivity, corresponding to dawn and evening, which could represent an intrinsic association with the semi-lunar tidal cycles of the study area. Pagurus criniticornis showed high activity not influenced by day/night conditions during the entire observed period. These activity pattern variations of the studied hermit crabs should be taken into account in designing further experiments. More precise and accurate interspecific behavioral comparisons among species could be achieved in nocturnal experiments, the high activity period of all species.  (+info)

Use of energy reserves in fighting hermit crabs. (14/61)

When animals engage in fights they face a series of decisions, which are based on the value of the contested resource and either their relative or their absolute fighting ability. Certain correlates of fighting ability or 'resource holding potential' such as body size are fixed but physiological correlates are expected to vary during the encounter. We examine the role of energy reserves in determining fight outcomes and parameters during 'shell fighting' in hermit crabs. During these fights, the two contestants perform very different roles of attacker and defender. We show that the balance of the total energy pool, in the form of glucose and glycogen, determines the ability of defenders to resist eviction from their shells. Low glucose in evicted defenders is not caused by depletion of energy reserves, rather mobilization of glycogen appears to be the result of a strategic decision about whether to resist effectively, based on the perceived fighting ability of the attacker. Attackers, however, always initiate the fight so such a decision for this role appears unlikely. In addition to influencing decisions and ability during fights, physiological correlates of fighting ability can in turn be influenced by strategic decisions.  (+info)

Larval release rhythm of the mole crab Emerita talpoida (Say). (15/61)

Ovigerous mole crabs Emerita talpoida (Say) were monitored in the laboratory to determine if the time of larval release is synchronous and under endogenous control. To determine the time of larval release, ovigerous females were placed under a 14:10 light/dark cycle simulating the ambient photoperiod. Hatching was rhythmic, occurring as a quick burst lasting about 5-15 min shortly after the onset of darkness. An individual mole crab will release batches of larvae for up to three successive nights, suggesting that the rhythm is under endogenous control. Mole crabs monitored under constant low-level red light displayed the same release pattern with hatching occurring near the time of expected sunset, indicating the presence of a circadian rhythm in larval release. To investigate whether the female or the embryos control hatching, a portion of the egg mass (50-100 embryos) was separated from the female. The time of hatching of the detached embryos subjected to either a still or shaken treatment was compared with the hatching time of embryos still attached to the female. Detached eggs in both treatments hatched within 1.5-2 h of the time of the female-attached eggs, which suggests that embryos control the timing of hatching.  (+info)

Bio-ecological aspects of the hermit crab Paguristes calliopsis (Crustacea, Diogenidae) from Anchieta Island, Brazil. (16/61)

In southern Atlantic studies on hermit crab biology are scanty considering the local biodiversity. In this way, some population features of Paguristes calliopsis Forest and Saint Laurent, 1968 such as size frequency distribution, sex ratio and shell occupation in the natural environment were studied. Specimens were collected by means of scuba methods in the infralittoral area of the Anchieta Island. A total of 116 individuals were analyzed. Size measurements (minimum; maximum; mean shield length +/- sd, respectively) were 0.8; 4.5; 2.76 +/- 0.79 mm for males and 2.28 +/- 0.36 mm for females. The sex ratio was 1.47:1 in favor of males which prevailed in the largest size classes. The hermit crabs occupied shells from eleven gastropod species and Cerithium atratum (Born 1778) was significantly the most occupied one (75.86%). Significant correlations were not obtained in all regression analysis, demonstrating sexual differences on fitting of the occupied shells. In the studied area P. calliopsis population is small if compared with the other hermit crab populations. The shell utilization varies as a function of shell availability and hermit crabs interspecific competition, in relation to the other coexistent species.  (+info)