Gene Regulatory NetworksGene Expression RegulationTranscription FactorsGene Expression ProfilingTranscription, GeneticComputational BiologyGene Expression Regulation, DevelopmentalOligonucleotide Array Sequence AnalysisPromoter Regions, GeneticGene Expression Regulation, PlantBase SequenceAlgorithmsModels, GeneticMolecular Sequence DataRNA, MessengerMicroRNAsGene ExpressionBinding SitesSignal TransductionDNA-Binding ProteinsSoftwareModels, BiologicalSystems BiologyGenomeGene Expression Regulation, FungalRNA, UntranslatedDatabases, GeneticComputer SimulationHomeodomain ProteinsTranscriptomeGenomicsCell LineChromatinAmino Acid SequenceReverse Transcriptase Polymerase Chain ReactionSp1 Transcription FactorGene Expression Regulation, BacterialTranscriptional ActivationEvolution, MolecularGene Expression Regulation, NeoplasticProtein BindingTrans-ActivatorsCell DifferentiationMutationBasic Helix-Loop-Helix Transcription FactorsRepressor ProteinsChromatin ImmunoprecipitationArabidopsisCluster AnalysisNuclear ProteinsSea UrchinsEmbryo, NonmammalianDNASequence Analysis, DNACells, CulturedSaccharomyces cerevisiaeConserved SequenceInternetBayes TheoremSequence AlignmentMetabolic Networks and PathwaysStrongylocentrotus purpuratusGenes, ReporterRegulatory Elements, TranscriptionalUser-Computer InterfaceGene Expression Regulation, ArchaealNucleic Acid ConformationTranscription Factor AP-1Nucleotide MotifsPhenotypeSequence Analysis, RNACell Line, TumorNeural Networks (Computer)Forkhead Transcription FactorsRegulatory Sequences, Nucleic AcidDown-RegulationEnhancer Elements, GeneticTransfectionProtein Interaction MappingBasic-Leucine Zipper Transcription FactorsUp-RegulationCell NucleusIn Situ HybridizationModels, StatisticalEscherichia coliCell LineageStochastic ProcessesProteomeGenes, RegulatorFeedback, PhysiologicalEchinodermataEndodermGene Expression Regulation, EnzymologicPhylogenySaccharomyces cerevisiae ProteinsDrosophila ProteinsPaired Box Transcription FactorsCell Physiological PhenomenaHeLa CellsBacterial Proteins