• New Zealand needs more bioinformatics skills for data analysis to derive maximum meaning from environmental samples and metagenomics information now coming through. (genomics-aotearoa.org.nz)
  • The biggest bottleneck broadly for us is bioinformatics, but metagenomics more specifically, because our bioinformatics person is busy with WGS, and while he has done a lot of 16S, he's done less shotgun sequencing, so we need more in the team to get started and upskill. (genomics-aotearoa.org.nz)
  • QIAGEN CLC Genomics Workbench Premium includes all bioinformatics tools needed to power microbiology research, providing readily integrated and streamlined NGS workflows combined with state-of-the art data interpretation and visualization to shift the focus from data to discovery. (qiagen.com)
  • Yet a lack of well integrated analytics for microbial genomics leaves researchers and organisations with the burden of integrating and maintaining all the required bioinformatics, statistics and visualisation tools required to power their research. (qiagen.com)
  • QIAGEN CLC Genomics Workbench Premium expands upon CLC Genomics Workbench, the industry-standard platform for bioinformatics computing. (qiagen.com)
  • Four keynote speakers who are world-renowned leaders in bioinformatics, genomics, systems biology and computational medicine delivered lectures on their cutting-edge research and shared their views and perspectives of their research fields. (biomedcentral.com)
  • Our department of bioinformatics is already by its name and by the composition of its members highly interdisciplinary (scientists with medical and biological training, computer science, mathematics, as well as with a background in chemistry, pharmacology) and as we require for new insights large amounts of data (genomics, transcriptomics, proteomics, metabolomics). (uni-wuerzburg.de)
  • The unit provide a range of services: RNA-Seq, Whole Genome Sequencing, Spatial transcriptomics and Metagenomics (bacterial 16S rRNA, ITS). (gulbenkian.pt)
  • The unit offers 10X Genomics Visium Spatial Transcriptomics service with the Histopathology Facility. (gulbenkian.pt)
  • The MGML is staffed and equipped to provide services ranging from 16S ribosomal RNA sequencing (16S rRNA), shotgun metagenomics and RNA sequencing. (cincinnatichildrens.org)
  • Shotgun metagenomics allows researchers to comprehensively sample all genes in all organisms present in a given complex sample. (igatechnology.com)
  • They then undertook shotgun metagenomics to cross reference the species in the microbiome with the other individual measures. (nutraingredients.com)
  • An efficient method for high molecular weight bacterial DNA extraction suitable for shotgun metagenomics from skin swabs. (cdc.gov)
  • Shotgun metagenomics of fecal samples from children in Peru reveals frequent complex co-infections with multiple Campylobacter species. (cdc.gov)
  • 156 (9.9%) were identified as human genomics/genetics publications. (cdc.gov)
  • All human genomics/genetics articles were coded according to topic and phase of translational research . (cdc.gov)
  • Metagenomics-enabled reverse-genetics assembly and characterization of myotis bat morbillivirus. (cdc.gov)
  • Our research includes studies of genomic repeat sequences and indel evolution with applications in cancer genomics and biotechnology, as well as studies of dynamics and evolution of viruses and other pathogens. (zhaw.ch)
  • The Metagenomics Summer School was a great opportunity for faculty and students from a range of institutions to upskill in metagenomics, an area of microbiology that is moving quickly and requires access to a set of computational resources that many of us have shied away from. (genomics-aotearoa.org.nz)
  • While traditional microbiology and microbial genome sequencing and genomics rely upon cultivated clonal cultures, early environmental gene sequencing cloned specific genes (often the 16S rRNA gene) to produce a profile of diversity in a natural sample. (wikipedia.org)
  • General and enviromental microbiology researcher and PI with independent research programme in microbial ecology, metagenomics, host-microbial interactions and bacteriophage-related technologies. (massey.ac.nz)
  • These case studies in comparative and functional genomics, epigenomics, and metagenomics are providing a more complete picture of the genome structures and functions. (usda.gov)
  • The Microbial Genomics and Metagenomics Laboratory (MGML) provides metagenomic sequencing and analysis support to the Cincinnati Children's, University of Cincinnati and surrounding communities. (cincinnatichildrens.org)
  • Some were planning a sequencing project, several needed more analytical skills to make the most of existing plant or animal datasets, while others were getting into metagenomics research. (genomics-aotearoa.org.nz)
  • Our team has a lot of interest in whole genome sequencing (WGS) and metagenomics. (genomics-aotearoa.org.nz)
  • Genomics Aotearoa has assembled a crack team of instructors who were able to patiently walk us through the use of the NeSI servers and data analysis pipelines for analysing complex populations in our DNA sequencing projects. (genomics-aotearoa.org.nz)
  • The sequencing of 16S rRNA and the Internal Transcribed Spacer (ITS) are the main applications of amplicon sequencing in metagenomics. (personalgenomics.it)
  • CD Genomics' comprehensive metagenomics service is based on a single molecule, real-time (SMRT) sequencing from PacBio Biosciences. (cd-genomics.com)
  • The SMRT-based metagenomics is a culture-free, long-read sequencing strategy that can effectively reduce some splicing errors and visibly improve the resolution of microbial community profiling. (cd-genomics.com)
  • Metagenomics: Tools and Insights for Analyzing Next-Generation Sequencing Data Derived from Biodiversity Studies. (cd-genomics.com)
  • The Genomics Unit offers short read (Illumina NexSeq 2000 and Illumina MiSeq) and long read Nanopore sequencing, Library preparation, and Fragment-analyzer/TapeStation sample QC services. (gulbenkian.pt)
  • For Single Cell sequencing the unit operates a 10X Genomics Chromium controller and the new Chromium X capable of high-throughput experiments. (gulbenkian.pt)
  • Metagenomics is the study of genetic material recovered directly from environmental or clinical samples by a method called sequencing. (wikipedia.org)
  • As the price of DNA sequencing continues to fall, metagenomics now allows microbial ecology to be investigated at a much greater scale and detail than before. (wikipedia.org)
  • Precision metagenomics sequencing for food safety: hybrid assembly of Shiga toxin-producing Escherichia coli in enriched agricultural water. (cdc.gov)
  • Rapid viral metagenomics using SMART-9N amplification and nanopore sequencing. (cdc.gov)
  • Benchmarking second and third-generation sequencing platforms for microbial metagenomics. (cdc.gov)
  • Here we present a summary of the 2014 International Conference on Intelligent Biology and Medicine (ICIBM 2014) and the editorial report of the supplement to BMC Genomics and BMC Systems Biology that includes 20 research articles selected from ICIBM 2014. (biomedcentral.com)
  • Silver Age of GOLD Introduces New Features The Genomes OnLine Database makes curated microbiome metadata that follows community standards freely available and enables large-scale comparative genomics analysis initiatives. (doe.gov)
  • Towards long-read metagenomics: complete assembly of three novel genomes from bacteria dependent on a diazotrophic cyanobacterium in a freshwater lake co-culture. (cd-genomics.com)
  • GPHPD was screened for CDC/ATSDR-authored publications about human genomics, including articles that assessed non-human genomes (e.g., pathogens, vectors). (cdc.gov)
  • Much of the interest in metagenomics comes from these discoveries that showed that the vast majority of microorganisms had previously gone unnoticed. (wikipedia.org)
  • Genomics and postgenomics of biodiversity - Metagenomics of microorganisms from the environment. (genopole.com)
  • Genoscope is currently focusing its own research activity on the metagenomics of microorganisms from the environment, and more specifically marine eukaryotes (the TARA Oceans project), soilborne organisms, the bacterial flora of the human digestive tract, or those involved in effluent treatment. (genopole.com)
  • SMRT-based metagenomics can be used to study the species composition and abundance, identify differentially expressed genes (DEGs) among samples, explore gene functions and metabolic pathways, and mine gene resources for bioactive products. (cd-genomics.com)
  • While metagenomics reveals which microbes are present and what potential they have, metatranscriptomics disclose their activity by identifying genes that are expressed in a particular microbial environment. (igatechnology.com)
  • UMCES researchers focus on a range of scales from individual genes to genomics to metagenomics of complex communities. (umces.edu)
  • HAM-ART: An optimised culture-free Hi-C metagenomics pipeline for tracking antimicrobial resistance genes in complex microbial communities. (cdc.gov)
  • This review also describes recent achievements in genomics, metagenomics, and metatranscriptomics, which have been implemented in studies on the microbial composition of environments contaminated with organic compounds. (caister.com)
  • 1 year subscription for static licenses for CLC Genomics Workbench, CLC Microbial Genomics Module, CLC Single Cell Analysis Module and CLC Genome Finishing Module to use the software on a single computer. (qiagen.com)
  • QIAGEN CLC Genomics Workbench Premium delivers novel insights in metagenomics, microbiome profiling, pathogen typing or genome-based outbreak investigations. (qiagen.com)
  • Advance the use of genomics and metagenomics for detecting fungal pathogens and antifungal drug resistance. (cdc.gov)
  • Metagenomics characterization of respiratory viral RNA pathogens in children under five years with severe acute respiratory infection in the Free State, South Africa. (cdc.gov)
  • Since 2011, OGPPH staff have assembled and curated an online, searchable database of CDC/ATSDR publications in human and pathogen genomics. (cdc.gov)
  • The CDC-authored Genomics and Precision Health Publications Database (GPHPD) has more than 3,600 publications, most of which are in pathogen genomics and advanced molecular detection. (cdc.gov)
  • We at Personal Genomics use the main tools for verifying the quality and quantity of extracted DNA, such as NanoDrop, LabChip and Qubit. (personalgenomics.it)
  • Research at the intersection of biological and microbial oceanography and functional genomics. (ucsd.edu)
  • Final Round of 2022 CSP Functional Genomics Awardees Meet the final six researchers whose proposals were selected for the 2022 Community Science Program Functional Genomics call. (doe.gov)
  • These skills are applied to microbial ecology, probiotics, metagenomics and microbial functional genomics. (massey.ac.nz)
  • Functional genomics, metabolism. (genopole.com)
  • At the same time we developed a number of algorithms and techniques to study the large-scale behaviour of biological networks: This includes tools to model and calculate metabolic networks, for instance YANA, YANAsquare, YANAvergence as well as for regulatory networks and functional genomics (InGeno, GENOVA, JANE). (uni-wuerzburg.de)
  • Metagenomics, the study of genetic material recovered directly from environmental samples, is giving microbial ecologists a much more detailed look at the previously hidden diversity of microscopic life, significantly adding to our understanding of the living world. (genomics-aotearoa.org.nz)
  • For the first time in New Zealand, researchers and students across a diverse range of disciplines and institutes came together at a Genomics Aotearoa Summer School at the University of Auckland in December 2019 to upskill in fundamental metagenomics approaches, building on basic data carpentry skills taught by Genomics Aotearoa and NeSI. (genomics-aotearoa.org.nz)
  • Genomics Aotearoa, in partnership with NeSI , has upped its training on analysis methods to build national capabilities, linking researchers working in the field to create much-needed networks. (genomics-aotearoa.org.nz)
  • Over 100 researchers, including many of Ireland's top genomics scientists, are associated with the programme and available as PhD supervisors. (findaphd.com)
  • This research is performed in close collaboration with the UMR 8030 Metabolic Genomics research unit. (genopole.com)
  • The QIAGEN CLC Genomics Workbench Premium is intended for molecular biology applications. (qiagen.com)
  • During the past decades, advances in metagenomics have dramatically increased our understanding of microbial life and greatly promoted developments related to food production, agriculture, environmental remediation, drug discovery and human health 1 . (nature.com)
  • Investigating Environmental Determinants of Soil-Transmitted Helminths Transmission using GPS Tracking and Metagenomics Technologies. (cdc.gov)
  • An improved workflow for accurate and robust healthcare environmental surveillance using metagenomics. (cdc.gov)
  • Cow Rumen and the Early Days of Metagenomics Tracing a cow rumen dataset from the lab to material for a hands-on undergraduate research course at CSU-San Marcos that has since expanded into three other universities. (doe.gov)
  • SMRT-based metagenomics has been widely applied to research and biotech industry. (cd-genomics.com)
  • Over the years I have participated in diverse research projects involving metagenomics and prokaryotic genomics but my main focus has always been on aquatic systems, especially on soda lakes. (slu.se)
  • QIAGEN CLC Genomics Workbench Premium provides integrated analytics that deliver research continuity. (qiagen.com)
  • The research group develops computational methods for comparative and evolutionary genomics, including modelling of stochastic processes in molecular evolution. (zhaw.ch)
  • Metagenomics - a guide from sampling to data analysis. (cd-genomics.com)
  • Scientists at the University of Utah, ARUP Laboratories, and IDbyDNA, Inc., have developed ultra-fast, meta-genomics analysis software called Taxonomer that dramatically improves the accuracy and speed of pathogen detection. (rapidmicromethods.com)
  • Plugins and modules add a layer of specialized tools and workflows to CLC Genomics Workbench, creating a comprehensive solution for microbial genomics and metagenomics data analysis. (qiagen.com)
  • Use of a taxon-specific reference database for accurate metagenomics-based pathogen detection of Listeria monocytogenes in turkey deli meat and spinach. (cdc.gov)
  • New Detection of Locally Acquired Japanese Encephalitis Virus Using Clinical Metagenomics, New South Wales, Australia. (cdc.gov)
  • In October 2021, the CDC Office of Genomics and Precision Public Health (OGPPH) launched a new, five-year initiative to strengthen public health capacity in genomics and precision medicine. (cdc.gov)
  • The Genomics Data Science PhD is a 4-year structured PhD training programme. (findaphd.com)
  • He explained that the team took microbiome data from stool sample metagenomics, looked at 18 different measures of the person - age, gender, BMI, blood pressure etc - as well as their habitual diet and fasting and postpranial responses. (nutraingredients.com)
  • Our SMRT-based metagenomics, using PacBio RSII or Sequel from PacBio Biosciences, is a highly accurate, culture-independent metagenome profiling approach to study the microbial communities despite the culture limitations. (cd-genomics.com)
  • The group also uses comparative genomics to extend the discoveries throughout the green algal lineage. (berkeley.edu)