Gene Regulatory NetworksModels, GeneticGene Expression ProfilingComputational BiologyAlgorithmsSystems BiologyTranscription FactorsGene Expression Regulation, DevelopmentalComputer SimulationModels, BiologicalGene Expression RegulationOligonucleotide Array Sequence AnalysisSea UrchinsStrongylocentrotus purpuratusSignal TransductionDatabases, GeneticBayes TheoremNeural Networks (Computer)Embryo, NonmammalianEchinodermataEvolution, MolecularMetabolic Networks and PathwaysStochastic ProcessesSoftwareGenomicsTranscription, GeneticTranscriptomeMicroRNAsCell Physiological PhenomenaCluster AnalysisNucleotide MotifsEndodermMolecular Sequence DataGene Expression Regulation, BacterialFeedback, PhysiologicalBase SequenceModels, StatisticalHomeodomain ProteinsSaccharomyces cerevisiaeGene Expression Regulation, PlantArabidopsisProteomeRegulatory Elements, TranscriptionalGenomeProtein Interaction MappingBiological EvolutionMutationCell DifferentiationPhenotypeGenes, RegulatorBinding SitesBody PatterningPromoter Regions, GeneticEscherichia coliMesodermImmune System PhenomenaGene Expression Regulation, FungalMarkov ChainsChromatin ImmunoprecipitationEctodermGastrulationCell LineageGenes, PlantReproducibility of ResultsRNA, MessengerPhylogenyNonlinear DynamicsVertebratesAmino Acid SequenceCiona intestinalisPosition-Specific Scoring MatricesEpistasis, GeneticSkeletonBlastulaStarfishEmbryonic Stem CellsRegulonDrosophilaCaenorhabditis elegansArabidopsis ProteinsModels, TheoreticalConserved SequenceDrosophila melanogasterWork SimplificationLytechinusUser-Computer InterfaceMultigene FamilyDrosophila ProteinsSequence Analysis, DNAIn Situ HybridizationBacterial ProteinsProtein Interaction MapsSpecies SpecificityInternetNeural CrestTime FactorsEmbryonic DevelopmentSaccharomyces cerevisiae ProteinsArtificial IntelligenceChromosome Mapping