• We talk about 'whole-genome sequencing,' but it's a misnomer because there are parts of the genome that have been unseen, and there have been parts that have, what I'd call, weak assembly," Topol told Medscape Medical News . (medscape.com)
  • Serotyping, pulse-field gel electrophoresis, and whole-genome sequencing are now routine methods used in this surveillance system when V. parahaemolyticus is isolated during outbreaks. (cdc.gov)
  • In the future, DNA samples could be taken from babies for whole genome sequencing to look for diseases that are likely to crop up later in life. (medscape.com)
  • In the United Kingdom, Genomics England seeks to assess the feasibility, benefits, and risks of whole genome sequencing as part of the Newborn Genomes Programme , an analysis of 100,000 newborn genomes. (medscape.com)
  • L Lowercase till \E. \n (Logical) newline character. (perl.org)
  • and your OSses native newline character when reading from or writing to text files. (perl.org)
  • A backslash followed by one of the letters "n", "r", or "t" in an expanded string is recognized as an escape sequence for the character newline, carriage return, or tab, respectively. (exim.org)
  • dot): ANY ONE character except newline. (ntu.edu.sg)
  • start-comment sequence must be followed by a space (or by a control character such as a newline). (mysql.com)
  • Data that contains newline or tab characters need to be escaped. (lu.se)
  • is used to gain access to the names of the Unicode characters and named character sequences, and to allow you to define your own character and character sequence names. (perl.org)
  • described below) if it hasn't already been loaded with different arguments, in order to compile the named Unicode character into position in the string. (perl.org)
  • the string CHARNAME is first looked up in the list of standard Unicode character names. (perl.org)
  • refers to the Unicode character U+1F514, instead of the traditional U+0007. (perl.org)
  • N{} Named (Unicode) character. (perl.org)
  • p{}, \pP Character with a Unicode property. (perl.org)
  • This means that PHP only supports a 256-character set, and hence does not offer native Unicode support. (php.net)
  • is a hexadecimal number, also inserts a character into a string. (perl.org)
  • x{}, \x00 Hexadecimal escape sequence. (perl.org)
  • is a character in hexadecimal notation (e.g. (php.net)
  • A backslash followed by up to three octal digits is recognized as an octal encoding for a single character, and a backslash followed by "x" and up to two hexadecimal digits is a hexadecimal encoding. (exim.org)
  • Nucleotide sequence similarity among isolates was analyzed by using the Bioedit software ( 12 ). (cdc.gov)
  • To resolve phylogenetic relationships among ries of bacterial clonal complexes by using concatenated isolates, we sequenced 68 isolates from Europe and North sequences of housekeeping genes when within-loci and America at 1 chromosomal locus (16S-23S ribosomal RNA between-loci recombinations are infrequent ( 5 ). (cdc.gov)
  • The genetic homogeneity of ospC -A isolates was confi rmed agent, Borrelia burgdorferi , a spirochete that parasitizes by sequences at 6 additional chromosomal housekeeping vertebrates, is transmitted by hard-bodied ticks through- loci ( gap, alr, glpA, xylB, ackA, and tgt ). (cdc.gov)
  • In biology, a sequence motif is a nucleotide or amino-acid sequence pattern that is widespread and usually assumed to be related to biological function of the macromolecule. (wikipedia.org)
  • A string of characters drawn from the alphabet and enclosed in braces (curly brackets) denotes any amino acid except for those in the string. (wikipedia.org)
  • PON-PS requires users to submit fasta-format amino acid sequence(s) and variation(s) in the corresponding sequence(s). (lu.se)
  • No characters except the universal 20 amino acid codes are accepted in the sequence(s). (lu.se)
  • The ORF2 (145-bp) and ORF1 (364-bp) PCR products were sequenced, and sequence fragments were aligned by CLUSTALX 2.0 ( 7 ). (cdc.gov)
  • Paul began to re-tool from morpho-anatomy to DNA sequencing while teaching at a small, liberal arts college for nine years, before returning to North Carolina. (degruyter.com)
  • This document describes all backslash and escape sequences. (perl.org)
  • After explaining the role of the backslash, it lists all the sequences that have a special meaning in Perl regular expressions (in alphabetical order), then describes each of them. (perl.org)
  • This page describes how to create, alter, and drop a sequence in Cloud Spanner using Data Definition Language (DDL) statements. (google.com)
  • Jain is one of the first authors on the article, published online January 29 in Nature Biotechnology , that describes the genome sequencing project. (medscape.com)
  • Jain and colleagues also report that they are able to get much longer reads than has been possible with the typical Illumina sequencer, which is most commonly used for sequencing projects. (medscape.com)
  • According to IndieWire , new details about No Time To Die's pre-title sequence emerged in a recent article published by The Wall Street Journal . (ign.com)
  • I think that the title sequence plays as well on the familiarity that comes from repeated viewings and that the irony and humour implicit in the series is foregrounded in the title sequence. (mediacommons.org)
  • Also, the closing identifier must follow the same naming rules as any other label in PHP: it must contain only alphanumeric characters and underscores, and must start with a non-digit character or underscore. (php.net)
  • The second form can be used to separate the name from subsequent alphanumeric characters. (exim.org)
  • The Sequence Paint behavior is very similar to the Sequence Text and Sequence Replicator behaviors, which allow you to animate the Rotation, Color, Opacity, Scale, and Position parameters in sequence through the characters of a text layer or the elements of a replicator pattern. (apple.com)
  • The Sequence Paint behavior adds Width to that list of parameters, allowing you to create sequenced animation through the dabs of a paint stroke. (apple.com)
  • Add and Remove pop-up menus that add and remove parameters to the sequence. (apple.com)
  • Control sequences usually include variable parameters. (vt100.net)
  • Previous suggestions for applying divergence cut-off values of gene sequences to discriminate and define taxa (threshold-based approach), however, are based on the overall dissimilarity and are not character-based, i.e., do not use distinct molecular characters for separation and characterization [ 1 , 4 ]. (biomedcentral.com)
  • A control sequence uses two or more bytes to define a specific control function. (vt100.net)
  • The intermediate and final characters together define a control function. (vt100.net)
  • These escape sequences are also recognized in quoted strings when they are read in. (exim.org)
  • Strings can be matched via combining a sequence of characters (called sub-expressions). (ntu.edu.sg)
  • Confirm that the length of the first 32 strings produced is the Padovan sequence. (rosettacode.org)
  • First 10 L-system strings: A B C AB BC CAB ABBC BCCAB CABABBC ABBCBCCAB Lengths of the 32 first L-system strings: 1 1 1 2 2 3 4 5 7 9 12 16 21 28 37 49 65 86 114 151 200 265 351 465 616 816 1081 1432 1897 2513 3329 4410 These lengths are the 32 first terms of the Padovan sequence. (rosettacode.org)
  • a sequence of characters in a format string which is introduced by a tilde , and which is specially interpreted by code which processes format strings to mean that some special operation should be performed, possibly involving data supplied by the format arguments that accompanied the format string . (cmu.edu)
  • The tables below name the control functions assigned by DEC to control sequences with final bytes in the private range, with either zero or one intermediate bytes. (vt100.net)
  • Read sequence information from the GenBank ® database. (mathworks.com)
  • The sequence data were deposited in GenBank under accession nos. (cdc.gov)
  • Order events into a logical sequence or algorithm. (al.us)
  • Results: must be presented in a logical sequence in the text with minimal discussion, accompanied by appropriate tables. (bvsalud.org)
  • Or for sick newborns, if we could sequence and get results quickly, it could be a big advantage," Topol said. (medscape.com)
  • New York's Guardian study requires all newborns taking part to undergo genome sequencing. (medscape.com)
  • QUIDDICH considers four different types of characters, which partially allows variability within the query group and a restricted comparison to only certain members of the reference group. (biomedcentral.com)
  • Within a sequence or database of sequences, researchers search and find motifs using computer-based techniques of sequence analysis, such as BLAST. (wikipedia.org)
  • Researchers completed the first draft of the human genome sequence almost 20 years ago. (medscape.com)
  • Before any sequencing animation can occur, you must add at least one parameter to the behavior in the Inspector, then set a value for that parameter. (apple.com)
  • Unlike the double-quoted and heredoc syntaxes, variables and escape sequences for special characters will not be expanded when they occur in single quoted string s. (php.net)
  • Outside of gene exons, there exist regulatory sequence motifs and motifs within the "junk", such as satellite DNA. (wikipedia.org)
  • In the character-based approach, each position of an alignment represents a molecular character which may adopt different states in gene sequence data (e.g., nucleotides and deletions). (biomedcentral.com)
  • the analysis with CAOS [ 13 ] involves a complex workflow and was developed for classifying unidentified gene sequences. (biomedcentral.com)
  • The analysis is based on a novel representation of the gene sequence data, which enables a ranking of all alignment positions according to their diagnostic relevance, and subsequently their classification. (biomedcentral.com)
  • the primary purpose of this document is to have a quick reference guide describing all backslash and escape sequences. (perl.org)
  • matches a vertical bar, it's not an alternation), or it is the start of a backslash or escape sequence. (perl.org)
  • It is however guaranteed that backslash or escape sequences never have a punctuation character following the backslash, not now, and not in a future version of Perl 5. (perl.org)
  • If you use an alphanumerical character as the delimiter of your pattern (which you probably shouldn't do for readability reasons), you will have to escape the delimiter if you want to match it. (perl.org)
  • e Escape character. (perl.org)
  • A handful of characters have a dedicated character escape . (perl.org)
  • What are Escape sequence characters? (codeforwin.org)
  • Escape characters are sequence of characters that are converted to some another character which are difficult or impossible to print directly. (codeforwin.org)
  • Likewise there are many escape sequence character used in programming languages. (codeforwin.org)
  • An escape character begin with backward slash \ followed by escape character. (codeforwin.org)
  • Backslash is used as an escape character, as described in the following section. (exim.org)
  • It is recommended that parsers are forgiving and if an invalid escape sequence is found, eg. (lu.se)
  • specifies the length of each row for the displayed sequence. (mathworks.com)
  • In addition to the diagnostic DNA sequences, Chamberlainium capense sp. (degruyter.com)
  • It detects and classifies individual and combined signature characters (diagnostic molecular characters) based on so-called character state vectors. (biomedcentral.com)
  • DeSignate facilitates the inclusion of diagnostic molecular characters and their positions to complement taxon diagnoses. (biomedcentral.com)
  • For a standardized designation of the position of diagnostic molecular characters in taxon diagnoses, a reference sequence alignment and/or a reference sequence are recommended, facilitating comparability and reproducibility [ 1 ]. (biomedcentral.com)
  • Simultaneously with the development of our tool, the R-package QUIDDICH was established by Kühn and Haase [ 14 ], emphasizing the need for a tool that detects diagnostic molecular characters to complement formal taxon descriptions, especially for morphologically cryptic taxa. (biomedcentral.com)
  • For diagnostic purposes, only those characters that unequivocally discriminate the query group from the reference group are used. (biomedcentral.com)
  • Here, DeSignate , an innovative tool for detecting such diagnostic characters and their positions for taxon diagnoses, is introduced together with a formally defined terminology. (biomedcentral.com)
  • The variation(s) corresponding to a sequence should contain the same header line as the sequence. (lu.se)
  • The sequence(s) and variation(s) can be pasted in the correponding text-boxes or separate files containing sequence(s) and variation(s) can be submitted. (lu.se)
  • The fundamental idea behind all these notations is the matching principle, which assigns a meaning to a sequence of elements of the pattern notation: a sequence of elements of the pattern notation matches a sequence of amino acids if and only if the latter sequence can be partitioned into subsequences in such a way that each pattern element matches the corresponding subsequence in turn. (wikipedia.org)
  • The next statement assigns all the characters from the table. (maplesoft.com)
  • In December 2017, Oxford Nanopore announced that Martin Smith, PhD, a researcher at the Kinghorn Centre for Clinical Genomics at the Garvan Institute, Darlinghurst, Australia, and colleagues were the first to sequence more than 1 million bases of continuous sequence using the MinION sequencer. (medscape.com)
  • The DNA sequences, supported by the morpho-anatomical character of tetrasporangial conceptacle roof development, placed all three species in the genus Chamberlainium and not Pneophyllum , the only other genus in Chamberlainoideae. (degruyter.com)
  • The rules determining what it is are quite simple: if the character following the backslash is a punctuation (non-word) character (that is, anything that is not a letter, digit or underscore), then the backslash just takes away the special meaning (if any) of the character following it. (perl.org)
  • Usually, however, the first letter is I, and both [RK] choices resolve to R. Since the last choice is so wide, the pattern IQxxxRGxxxR is sometimes equated with the IQ motif itself, but a more accurate description would be a consensus sequence for the IQ motif. (wikipedia.org)
  • The first 15 characters of the description for each sequence should be unique. (lu.se)
  • Parameter characters modify the action or interpretation of the sequence. (vt100.net)
  • For proper interpretation of the file, you must ensure that it was written with the correct character set. (mysql.com)
  • A regex ( regular expression ) consists of a sequence of sub-expressions . (ntu.edu.sg)
  • In sequence-based software versioning schemes, each software release is assigned a unique identifier that consists of one or more sequences of numbers or letters. (wikipedia.org)
  • Changes are classified by significance level, and the decision of which sequence to change between releases is based on the significance of the changes from the previous release, whereby the first sequence is changed for the most significant changes, and changes to sequences after the first represent changes of decreasing significance. (wikipedia.org)
  • Finally, the divergence time of the seagrasses inferred from the cp genome sequences was generally consistent with previous studies. (bvsalud.org)
  • Subsequent MRI of the previous CT with the following sequences: axial T1 post gadolinium adminsitration and axial T2 sequences. (medscape.com)
  • There are several hundred rare diseases, and genome sequencing tools allow us to broaden our screening capabilities. (medscape.com)
  • To print new line an special character is given \n which is later converted to new line by compiler. (codeforwin.org)
  • A backslash can be used to prevent any special character being treated specially in an expansion, including backslash itself. (exim.org)
  • All characters, except those having special meaning in regex, matches themselves. (ntu.edu.sg)
  • This is something you really have to understand and basically what the concept of shot sequencing is is when you look at a moment happening whether you be at a wedding film, a Bar Mitzvah, an event, a birth announcement, some thing you're in control of, a commercial, a short film, whatever it is you're doing, there's always moments that are gonna happen. (creativelive.com)
  • The braces are required in the sequence. (php.net)
  • Paul collaborates with phycologists worldwide sequencing field-collected and type specimens of seaweeds from the 18th, 19th, and early 20th centuries, especially coralline red algae. (degruyter.com)
  • Phylogenetic analysis indicated that those strains are new variants of the sequence type 3 pandemic clone. (cdc.gov)
  • Here we obtained a well-resolved polymorphism type of intergenic spacer (IGS) sequence phylogeny of B. burgdorferi sensu stricto clonal complexes (corresponding to the ospC- A and -B groups) is associated by using multilocus sequence typing at housekeeping loci with hematogenous dissemination in patients with early as well as loci under adaptive evolution. (cdc.gov)
  • does not match character, but position such as start-of-line, end-of-line, start-of-word and end-of-word. (ntu.edu.sg)
  • Molecular characters have been added in integrative taxonomic approaches in recent years. (biomedcentral.com)
  • The inclusion of molecular characters into taxon diagnoses is not only hampered by problems, such as their definition and the designation of their positions in a reference alignment, but also by the technical effort. (biomedcentral.com)
  • Create and save a FASTA file with two sequences, and then display it. (mathworks.com)
  • file positions must increase monotonically, the amount of the increase between file positions corresponding to any two successive characters in the stream is implementation-dependent . (cmu.edu)
  • interprets all fields in the file as having the same character set, regardless of the data types of the columns into which field values are loaded. (mysql.com)
  • Our work was a 30sec and 10sec 3d sequence created 100% in Blender for the intro and outro sequence of a live action TV show called Klaas Vaak, about a wizard who draws in sand. (blendernation.com)
  • The character it inserts is the one whose code point (ordinal value) is equal to the number. (perl.org)
  • Either literate the characters or use a utf-8 enabled package for listing code. (stackexchange.com)
  • See the complete sequence DDL syntax reference for ( GoogleSQL-dialect databases and PostgreSQL-dialect databases ). (google.com)
  • Based on plastid encoded DNA sequences from psb A and rbc L markers, these species belong in the subfamily Chamberlainoideae. (degruyter.com)
  • Herein, we sequenced the chloroplast (cp) genomes of two seagrass species (Zostera muelleri and Halophila ovalis) and performed a comparative analysis of them with 10 previously published seagrasses, resulting in various novel findings. (bvsalud.org)
  • In addition, we screened out 2,751 simple sequence repeats and 1,757 long repeat sequence types in the cp genome sequences of the 12 seagrass species, ultimately finding seven hot spots in coding regions. (bvsalud.org)
  • We sequenced and assembled plastomes of all three Hydrocharis species and Limnobium laevigatum to explore the phylogenetic and biogeographical history of these aquatic plants. (bvsalud.org)
  • All files are text-based and should use the UTF-8 character encoding. (lu.se)
  • Limits: maximum 900 characters (100 for the title and 800 for the text). (bvsalud.org)
  • Images must be numbered in Arabic numerals according to the sequence in which they appear and must always be referred to in the text. (bvs.br)
  • Historically, taxonomic diagnoses are restricted to morphological characters distinguishing a particular taxon (the query group) from related taxa (the reference group). (biomedcentral.com)
  • Here is the format for a control sequence. (vt100.net)