Representation base sequence. Medical search. Frequent questions

Bidirectional Encoder Representations from Transformers BERT (Devlin et al. (kdnuggets.com)
Of course, GPT-3 and GPTs may grab headlines, but it belongs to a much larger superfamily of transformer models, including a plethora of variants based on the Bidirectional Encoder Representations from Transformers (BERT) family originally created by Google, as well as other smaller families of models from Facebook and Microsoft. (kdnuggets.com)

Examples of this kind of meta data are secondary structures (RNA and protein), protein hydrophobicity assignments, or other alternative alphabets for polypeptides, sequence quality data and nucleotide alignments with translations. (metacpan.org)
Several of the isolates used in this study sequence alignments of all available CoV nucleotide did not have a genome sequence record in GenBank. (cdc.gov)
The workflow accepts input reads in FASTQ, CRAM or BAM format, produces graph-based alignments in BAM or CRAM format, and outputs variant calls in VCF format. (sevenbridges.com)
Sequence Logos and its variants are the most commonly used method for visualization of multiple sequence alignments (MSAs) and sequence motifs. (uni-wuerzburg.de)
Outputs include alignments and phylogenetic trees of the 12 top matching reference sequences for each query. (cdc.gov)
HuCaT uses an algorithm based on number of matching queries, k-mers are used to calculate the actual matching nucleic acid k-mers (short substrings of DNA [n 9 nt in number of nucleotide sequence matches for type assignment using the HuCaT]) to build alignments between query and reference sequences. (cdc.gov)

In a paper being presented at the International Conference on Learning Representations in May, the MIT researchers develop a method for "learning" easily computable representations of each amino acid position in a protein sequence, initially using 3-D protein structure as a training guide. (sciencedaily.com)

Noncoding" sequences are not translated into proteins, and nucleic acids with such motifs need not deviate from the typical shape (e.g. the "B-form" DNA double helix). (wikipedia.org)
We have extended our studies to encompass intrinsically disordered proteins, and are using the sequences of those proteins as an added resource in the study of folding and stability in proteins. (rochester.edu)
Sequence-specific dynamic information in proteins. (rochester.edu)
Sequence-, structure-, and dynamics-based comparisons of structurally homologous CheY-like proteins. (rochester.edu)
A tabular approach to the sequence-to-structure relation in proteins (tetrapeptide representation) for de novo protein design. (medscimonit.com)
Proteins are linear chains of amino acids, connected by peptide bonds, that fold into exceedingly complex three-dimensional structures, depending on the sequence and physical interactions within the chain. (sciencedaily.com)
They trained their model on about 22,000 proteins from the Structural Classification of Proteins (SCOP) database, which contains thousands of proteins organized into classes by similarities of structures and amino acid sequences. (sciencedaily.com)
For each pair of proteins, they calculated a real similarity score, meaning how close they are in structure, based on their SCOP class. (sciencedaily.com)
Simplified lattice-based models provide a means for exploring the basics of the sequence-structure relationship of proteins. (lu.se)
With a distributed encoding onto the lattice, it differs from earlier attempts to fold lattice proteins on quantum annealers, which were based upon chain growth techniques. (lu.se)

In earlier work, we have applied novel bioinformatic methods to the comparison of protein sequences and protein structures, and used the resulting data to address problems at the foundations of bioinformatics. (rochester.edu)
The length of the meta data sequence is not dependent on the amount of the meta information. (metacpan.org)
Character based meta data is read and set by method meta() and its variants. (metacpan.org)
Edit: Dylan, in answer to your question below, the incorporation of varying fixed point data (as in the base space here) is just the kind of thing Bredon cohomology is designed for. (mathoverflow.net)
It accepts sequence data in a variety of formats and a basic LTR annotation in GFF3format as input. (uni-hamburg.de)
The method has also been reported to perform well on problems similar to the classification of sequence data, such as the classification of text documents, that have a high-dimensional feature space and sparse data ( 16 ). (asm.org)
Because these approaches will rely on novel data types such as DNA sequences and high-throughput phenotyping images, Breeding 4 will call for analyses that are complementary to traditional quantitative genetic studies, being based on machine learning techniques which make efficient use of sequence and image data. (springer.com)
corralm, a CA-based method for multi-table batch integration of scRNAseq data in shared latent space. (ne.jp)
DMAP components can filter and process aligned bisulphite sequenced data to generate comprehensive reference methylomes in different units for any genome. (otago.ac.nz)
The test data download unpacks into a directory named test_MDS_data containing fastq sequence reads and sam files from bismark mapping. (otago.ac.nz)
1: Chatterjee A, Stockwell P A, Rodger E J, and Morison I M, Comparison of alignment software for genome-wide bisulphite sequence data , Nucleic Acids Research Volume 40, Issue 10Pp. (otago.ac.nz)
Seven Bridges GRAF™ Suite comprises bioinformatics workflows and tools for secondary analysis of next generation sequencing (NGS) data, based on a pan-genome graph reference. (sevenbridges.com)
GRAF™ Pan Genome Reference - contains both small variants (SNPs and INDELs up to several dozens of base-pairs in length) as well as larger structural variants, which are typically difficult to identify from short-read sequencing data. (sevenbridges.com)
Traditionally, epidemiology has been based on data collected by public health agencies through health personnel in hospitals, doctors' offices, and out in the field. (plos.org)
Web-based data mining is having a revolutionary impact on the way we monitor global health outcomes and behaviors. (plos.org)
The quantitative trait locus (QTL) analysis of the growth habit-related traits was conducted based on phenotyping data from seven environments. (frontiersin.org)
Bytes - A simple refcounted data type representing an immutable sequence of zero or more bytes from an unspecified origin. (valadoc.org)
Sequence - The Sequence struct is an opaque data type representing a sequence data type. (valadoc.org)
SequenceIter - The SequenceIter struct is an opaque data type representing an iterator pointing into a Sequence . (valadoc.org)
Partitioning environmental sequencing data. (myexperiment.org)
Researchers can then use those representations as inputs that help machine-learning models predict the functions of individual amino acid segments -- without ever again needing any data on the protein's structure. (sciencedaily.com)
What Should Health Departments Do with HIV Sequence Data? (cdc.gov)
Genome sequence-based curation of PubMLST data challenges interspecies recombination in the Burkholderia cepacia complex. (cdc.gov)
Full-length genome sequence of segmented RNA virus from ticks was obtained using small RNA sequencing data. (cdc.gov)
Users have the possibility to share data they own (or have share credentials for) to other users of the same BASE installation. (lu.se)
BASE features a biomaterial LIMS tracking biological material from its source to hybridisation/sequencing and ultimately to raw data and analysis. (lu.se)
One of the important features of BASE is its capabilities as a local data repository. (lu.se)
A BASE project is used to group items (biomaterial, raw data, and experiments) into a logical entity, and a BASE experiment is a collection of bioassays, e.g., array data, grouped logically together for further analysis. (lu.se)
Data privacy is guarded by the data owner and BASE allows the owner to set data access rules. (lu.se)
To this end, each item in BASE is owned by a user enabling him to share data with colleagues. (lu.se)
BASE has an integrated file system to provide the possibility for researchers to collect all data files related to a project in one single storage location. (lu.se)
The file storage is an integral part of a strategy to store all experiment relevant data in BASE, even data types not already supported in analysis. (lu.se)
BASE features a hierarchically organised analysis interface that allows data filtering, normalisation, transformation, and other analyses. (lu.se)
In current times, an increasing volume of health-related data is generated from sources such as biosensors, health data registries, genome sequencing, and electronic health records, necessitating increasing integration with computers capable of analyzing complex data with the assistance of artificial intelligence (AI). (cdc.gov)
A more recent branch of ML is deep learning (DL), which allows computational models to extract high-level representations of data through multiple layers of data processing. (cdc.gov)
By exploiting the inherently estimates even when only a few data snapshots are available, low displacement rank, together with the development of suitable although the improved performance comes at a cost of a Gohberg-Semencul (GS) representations, and the use of data de- pendent trigonometric polynomials, the proposed time-recursive considerable computational complexity. (lu.se)
represent a data sequence interest in finding alternative time-varying spectral estimation under consideration, whereof subsets of length L may be techniques. (lu.se)
Define the data and robustness to model assumptions, there has been a particular frequency vectors interest in data-dependent filterbank-based algorithms. (lu.se)

Starting in the mid-1980s, Carl Woese revolutionized the field of microbiology with his rRNA-based phylogenetic comparisons delineating the three main branches of life ( 28 ). (asm.org)
We here present Alvis, an open-source platform for the joint explorative analysis of MSAs and phylogenetic trees, employing Sequence Bundles as its main visualization method. (uni-wuerzburg.de)
Noroviruses are associated with an compared to an established set of reference sequences to determine estimated 70,000-200,000 deaths annually [2,3 ] while sapoviruses genotypes and polymerase types based on phylogenetic clustering, or by primarily cause sporadic AGE in young children although outbreaks in employing NCBI BLAST web service. (cdc.gov)

Here we report genome-wide composition, patterning, and stage-specific dynamics of DNA methylation in pre-implantation rhesus monkey embryos as well as male and female gametes studied using an optimized tagmentation-based whole-genome bisulfite sequencing method. (nature.com)

Scasa, an isoform-level quantification method for high-throughput single-cell RNA sequencing by exploiting the concepts of transcription clusters and isoform paralogs. (ne.jp)

De novo identification tools such as LTRharvest determine the position of potential LTR retrotransposon or ERV insertions in genomic sequences. (uni-hamburg.de)
Residual amounts of amplified genomic DNA are minimized and do not interfere with mitochondrial-specific downstream methods such as qPCR or direct Sanger sequencing. (qiagen.com)
Following crRNA and tracrRNA hybridization, SpCas9 is targeted to genomic loci matching a 20-nt guide sequence within the crRNA, immediately upstream of a required 5′-NGG protospacer adjacent motif (PAM) 11 . (cdc.gov)

Below are four queries by me to ChatGPT4 for figuring out the underlying pattern of a numerical sequence and then producing additional numbers in the sequence. (evolutionnews.org)
The researchers then fed their model random pairs of protein structures and their amino acid sequences, which were converted into numerical representations called embeddings by an encoder. (sciencedaily.com)
We particularly encourage novel contributions based on laboratory and underground near-fault experiments, numerical modeling, the spatio-temporal relationship between seismic properties, injection/extraction parameters, and/or geology, and fieldwork. (copernicus.org)
Numerical simulations together with theoretical of the various IAA-based batch spectral estimation techniques complexity measures illustrate the achieved performance gain. (lu.se)

In biology, a sequence motif is a nucleotide or amino-acid sequence pattern that is widespread and usually assumed to be related to biological function of the macromolecule. (wikipedia.org)

Due to its high processivity and strand displacement activity, REPLI-g DNA Polymerase is capable of amplifying up to 100 kb without dissociating from the DNA template and minimizes unequal sequence and locus representation compared with PCR-based amplification methods. (qiagen.com)
A new high-density genetic linkage map was constructed by using specific locus amplified fragment sequencing technology. (frontiersin.org)

It is able to identify protein coding regions associated with the retrotransposition process as well as internal regulatory features using local alignment and hidden Markov model-based algorithms. (uni-hamburg.de)
The number of FDA-approved technologies that are based on AI/ML algorithms has increased by several fold over the last several years. (cdc.gov)

The fundamental idea behind all these notations is the matching principle, which assigns a meaning to a sequence of elements of the pattern notation: a sequence of elements of the pattern notation matches a sequence of amino acids if and only if the latter sequence can be partitioned into subsequences in such a way that each pattern element matches the corresponding subsequence in turn. (wikipedia.org)

The drawback of this approach could identify and distinguish between SARS and other for epidemiologic applications is that the analysis of PCR known CoV, including the human CoV 229E and OC43, products for mixed amplified samples requires sequencing individually and in a mixture of all 3 human viruses. (cdc.gov)
Similarity Studies of Corona Viruses through Chaos Game Representation. (cdc.gov)
and in sequencing of entire genomes of viruses from numerous different strains. (who.int)
BLAST algorithm against a set of reference sequences followed by notypes [6 ] with viruses in GI, GII, GVIII and GIX infecting humans. (cdc.gov)

As a consequence, experimental optical DNA maps are typically not complete representations of the chromosomal DNA sequence. (lu.se)

based on amplification methods that use primers and We present an alternative approach for rapid, sensitive, probes designed to detect specific organisms. (cdc.gov)
The base tious organisms still relies largely on culture methods and compositions of strategically selected regions of the microscopy, which were as important in the recent identi- genome are used to identify and distinguish organisms in fication of the severe acute respiratory syndrome-associat- the sample. (cdc.gov)
Broad-range polymerase chain reaction (PCR) methods increased affinity and base pairing selectivity (18,19). (cdc.gov)
In this blog post, we discuss some of the fundamental advantages of our Pan-Genome approach compared to other linear or graph-based methods. (sevenbridges.com)
The aim of this project is to explore quantum computing based methods for solving lattice protein problems. (lu.se)
METHODS: Based on the Beijing Functional Community Cohort, 4392 participants who underwent three health examinations (2015, 2016, and 2017) were followed up for incident T2D until the end of 2021. (bvsalud.org)
Traditionally, the gold standard for DST is culture-based phenotypic methods. (msdmanuals.com)

are applicable to biobanks associated with genome, and the development of genomics population-based studies coordinated by databases and new bioinformatics tools. (who.int)

Transformers are the most visible and impactful application of attention in machine learning and, while transformers have mostly been used in NLP, the biological inspiration for attention is loosely based on the vision systems of animals. (kdnuggets.com)

Beyond Supersecondary Structure: Physics-Based Sequence Alignment. (rochester.edu)
They provide consensus-based summaries of the sequences in the alignment. (uni-wuerzburg.de)

begingroup$ The Serre spectral sequence is functorial. (mathoverflow.net)
It is true that each element of the group gives a map of spectral sequences. (mathoverflow.net)
If you construct the Serre spectral sequence in the usual way, there is a non-equivariantly inconsequential choice of base point in the base space. (mathoverflow.net)
You do not get to collate your actions one element of the group at a time into an algebraically meaningful action of the group on "the" spectral sequence. (mathoverflow.net)
Then there is an equivariant Serre spectral sequence, developed by Moerdijk and Svensson: The equivariant Serre spectral sequence. (mathoverflow.net)

Molecule's representation in 3D. (pte.hu)
3. Molecule's building based on their Lewis-formula and/or sequence. (pte.hu)
Such maps serve as a coarse-grained representation - fingerprint - of a DNA molecule's sequence. (lu.se)

Traditionally, sequences are gastroenteritis (AGE) in humans. (cdc.gov)

Within a sequence or database of sequences, researchers search and find motifs using computer-based techniques of sequence analysis, such as BLAST. (wikipedia.org)
Researchers are beginning to use machine-learning models to predict protein structures based on their amino acid sequences, which could enable the discovery of new protein structures. (sciencedaily.com)
Rather than predicting structure directly -- as traditional models attempt -- the researchers encoded predicted protein structural information directly into representations. (sciencedaily.com)
In the researchers' work, each embedding in the pair contains information about how similar each amino acid sequence is to the other. (sciencedaily.com)
Although becoming less commonly used, the array production LIMS of previous BASE versions is retained to support researchers with spotting facilities, e.g., protein array production and BAC array printing that may not be commercially available. (lu.se)

Outside of gene exons, there exist regulatory sequence motifs and motifs within the "junk", such as satellite DNA. (wikipedia.org)
Another related tool, RDP Library Compare, was developed to facilitate microbial-community comparison based on 16S rRNA gene sequence libraries. (asm.org)
Here, we identified the coding sequence of the EZH2 gene and characterized its expression pattern in fetal tissues of Duroc pigs at 65- and 90-day postcoitus (dpc). (hindawi.com)

Specifically, starting with the known piRNA-disease associations represented as a graph, we applied subgraph projection to construct piRNA-piRNA and disease-disease subgraphs for the first time, followed by a residual scaling-based feature augmentation algorithm for node initial representation. (biomedcentral.com)
The still image segmentation component is comprised of a conventional spatial segmentation algorithm (Recursive Shortest Spanning Tree (RSST)), a hierarchical segmentation representation method (Binary Partition Tree (BPT)), and user interaction. (dcu.ie)
Web-based to query sequences using a k-mer (DNA substring) based algorithm. (cdc.gov)

We recently proposed Sequence Bundles, a motif visualization technique that maintains a one-to-one relationship between sequences and their graphical representation and visualizes covariant sites. (uni-wuerzburg.de)

In addition to being tested with the corpus of 5,014 type strain sequences from Bergey's outline, the RDP Classifier was tested with a corpus of 23,095 rRNA sequences as assigned by the NCBI into their alternative higher-order taxonomy. (asm.org)
There were 9 amino acid insertions and an amino acid substitution in this transcript compared with the validated reference sequence in NCBI. (hindawi.com)

Alternative approach to protein structure prediction based on sequential similarity of physical properties. (rochester.edu)
ChatGPT seems to find some similarity between the sequence I put forward and the number pi. (evolutionnews.org)

The Ribosomal Database Project (RDP) Classifier, a naïve Bayesian classifier, can rapidly and accurately classify bacterial 16S rRNA sequences into the new higher-order taxonomy proposed in Bergey's Taxonomic Outline of the Prokaryotes (2nd ed., release 5.0, Springer-Verlag, New York, NY, 2004). (asm.org)
In 2002, an ad hoc committee for the reevaluation of species definition in bacteriology ( 24 ) advised that all new bacterial species descriptions include an rRNA sequence from the type strain, and in 2001, Bergey's Trust published a revised higher-order taxonomy attempting to reconcile bacterial taxonomy with rRNA-based phylogeny ( 12 , 13 ). (asm.org)

To understand how weather and meteorological sequence variables affect crop yield, the positional encoding used in Transformers is typically shared across different sample sequences. (ijcai.org)

Using this foundation, BERT breaks the familiar left-to-right indoctrination that is inherent in earlier text analysis and representation models. (kdnuggets.com)
The following is an example of how an input sequence is represented in BERT. (kdnuggets.com)

Tetrapetide sequences and structures were expressed by letter codes. (medscimonit.com)
RESULTS: High values of the rho-coefficient extracted sequences of strong structural determinability and structures of high sequence selectivity. (medscimonit.com)
But this is challenging, as diverse amino acid sequences can form very similar structures. (sciencedaily.com)
The motivation is to move away from specifically predicting structures, and move toward [finding] how amino acid sequences relate to function. (sciencedaily.com)

The method is based on multiple displacement amplification (MDA) technology, which carries out isothermal genome amplification utilizing a uniquely processive DNA polymerase. (qiagen.com)
To develop and evaluate a web-based tool for rapid and accurate genotyping of noroviruses and Polymerase sapoviruses. (cdc.gov)
In this paper, we describe the development and evaluation of an forces that drive norovirus evolution [ 9 , 10 ] and most frequently occur alternative web-based tool, Human Calicivirus Typing (HuCaT) tool for at the junction of the RdRp (polymerase) and VP1 (capsid) encoding typing of human norovirus and sapovirus sequences. (cdc.gov)
Many of the active NICs in the Region have optimal capacity for viral isolation, polymerase chain reaction, serological testing and sequencing. (who.int)

This has led to the development of graph-based references, able to naturally represent all polymorphisms, including insertions, deletions, and structural variation. (sevenbridges.com)

The presence of elements related to water notably increased in final graphic representations from pre-school, primary, and secondary education, thus evidencing that the use of gardens facilitates an approach to responsible water management. (frontiersin.org)

Building on theories from case-based learning and adaptive learning, the goal of this research is to develop the case adaptation mechanism for adaptive case-based learning in web-based environment by designing the adaptive case-based learning model and using both artificial neural network and case-based reasoning techniques so that the proposed mechanism is capable of reasoning and planning multilayer pedagogic knowledge. (ncl.edu.tw)
Computers, however, have no facility in this regard, and LLMs (large language models) based on neural nets, such as ChatGPT, are a case in point. (evolutionnews.org)
This technology based on the sequence-to-sequence architecture for neural machine translation defines how to efficiently train a multilingual system extendable to new languages and modalities while allowing knowledge transfer. (upc.edu)

The RDP Classifier is suitable both for the analysis of single rRNA sequences and for the analysis of libraries of thousands of sequences. (asm.org)

The results presented on standard test sequences illustrate the potential use of this system for object-based coding and representation of multimedia. (dcu.ie)

Homolog detection using global sequence properties suggests an alternate view of structural encoding in protein sequences. (rochester.edu)

We propose a novel transformer based architecture for accurate and robust crop yield prediction, by introducing a Customized Positional Encoding (CPE) that encodes a sequence adaptively according to static information associated with the sequence. (ijcai.org)
Here, we proposed an end-to-end model, referred to as PDA-PRGCN (PDA prediction using subgraph Projection and Residual scaling-based feature augmentation through Graph Convolutional Network). (biomedcentral.com)
Beside GAPDA and SPRDA, with recent in-depth advances on graph theory and network science, various biomedical entity association prediction (EAP) approaches based on graph convolutional network (GCN) [ 14 ] have been proposed. (biomedcentral.com)
conducted a systematic review assessing the risk of bias in studies that used ML-based prediction models in observational studies across medical specialties. (cdc.gov)

Here, we develop a novel spin representation for lattice protein folding tailored for quantum annealing. (lu.se)

Material reflectance properties are then estimated for video sequences of a moving person captured under uniform ambient illumination by matching the observed local image statistics to the reference observations. (jvrb.org)
The estimated reflectance properties are then transferred to image sequence observations of a dynamic scene by matching the observations in the static scene. (jvrb.org)
We attempt to untangle the processes that control the occurrence and evolution of disposal-induced earthquake sequences by integrating detailed seismicity observations, pore pressure modeling, and 3D physics-based earthquake simulations. (copernicus.org)
Observations of earthquake sequences in Oklahoma and Kansas include some sequences that have near-Poissonian distribution of interevent times and robust foreshock sequences, while other sequences display more typical mainshock-aftershock clustering behavior. (copernicus.org)

Prefix sub , like in subseq(), means that the method applies to sub region of the sequence range and takes start and end as arguments. (metacpan.org)
Prefix named_ in method names allows the used to attach multiple meta strings to one sequence by explicitly naming them. (metacpan.org)
In this paper, we present a method of rectilinear block packing using selected sequence-pair (SSP), a rectangle packing representation. (sciweavers.org)
So far, the fastest method based on a sequence-pair required Oðn2 þ '3 Þ time, where ' is the number of rectilinear blocks. (sciweavers.org)
In mouse, a unidirectional demethylation process from the zygote stage to blastocyst stage is observed using either reduced representation bisulfite sequencing (RRBS) or single-base resolution whole-genome bisulfite sequencing (WGBS) method. (nature.com)
Today, rRNA-based analysis remains a central method in microbiology, used not only to explore microbial diversity but also as a day-to-day method for bacterial identification. (asm.org)
Comparison of these results with another method based on information entropy revealed high accordance. (medscimonit.com)

This strategy has been successfully from large groupings of organisms, electrospray ionization used with consensus 16S ribosomal RNA primers for deter- mass spectrometry for accurate mass measurements of PCR products, and base composition signature analysis to mining bacterial diversity, both in environmental samples identify organisms in a sample. (cdc.gov)
Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed. (google.com)
Afterward, iPiDi-PUL extracted key features and conducted dimension reduction by principal component analysis over feature vector based on positive unlabeled learning [ 11 ]. (biomedcentral.com)
The selection of analysis tools depends on array type and available plug-ins where a wide range of tools are pre-installed with BASE, and optional plug-ins can be downloaded from the BASE plug-in site . (lu.se)
The methodology used was a textual analysis, based on the `Multi-code mind-set' where one thinks about film and music as two separate and competing entities that hand in hand creates dramatic representations. (lu.se)
The sequence y(n) of "almost non-cyclic" vectors follows the formula y(n+1) = y(n) + r(T) y(n), which will allow for efficient use of elementary Fourier Analysis. (lu.se)

The bottom track contains a representation of a hierarchical LTR retrotransposon annotation graph, as reported by LTRdigest, collapsed into a single track. (uni-hamburg.de)
GAPDA treated each known piRNA-disease association pair as a node in their reconstructed graph and employed graph attention network to make representation learning [ 12 ]. (biomedcentral.com)

We prior knowledge of nucleic acid sequence information is use broad-range PCR to generate amplification products required to develop these tests, they are not able to identi- from the broadest possible grouping of organisms, followed fy unanticipated, newly emergent, or previously unknown by electrospray ionization mass spectrometry and base infectious organisms. (cdc.gov)

To this end we develop CAREER, a transformer-based model that uses transfer learning to learn representations of job sequences. (nips.cc)

To facilitate mammalian genome engineering applications, we provide a web-based software tool to guide the selection and validation of target sequences as well as off-target analyses. (cdc.gov)
We performed northern blot analyses for the guide RNA truncations and found increased levels of expression for the longer tracrRNA sequences, suggesting that improved target cleavage was at least partially due to higher sgRNA expression or stability ( Fig. 1c ). (cdc.gov)

The paper laid the groundwork for doing away with architectures sporting recurrent connections in favor of long-sequence inputs coupled with attention. (kdnuggets.com)

This class defines an abstract interface for basic residue-based meta information. (metacpan.org)
At this point a residue in a sequence object can have only one meta value. (metacpan.org)

With MLM, instead of predicting the complete incoming sequence by going from left to right or vice versa, the model masks a percentage of tokens at random, and only predicts those masked tokens. (kdnuggets.com)
CONCLUSIONS: The results revealed sequence-to-structure (and vice versa) correlation in early-stage folding. (medscimonit.com)

This sequence appears to follow a pattern based on the positional value of digits (zero-based) in the decimal representation of pi (π). (evolutionnews.org)
We argue that it is necessary and beneficial to differentiate the positional encoding for distinct samples based on time-invariant properties of the sequences. (ijcai.org)

As output, LTRdigest creates GFF3 and CSV annotations as well as FASTA sequence files for all detected features. (uni-hamburg.de)
Complete annotations as well as the members and sequences of the 62 groups reported are available for download. (uni-hamburg.de)

It is available as a full-featured standalone version (http://www.bitbucket.org/rfs/alvis) and its Sequence Bundles visualization module is further available as a web application (http://science-practice.com/projects/sequence-bundles). (uni-wuerzburg.de)
Genetic grouping of SARS-CoV-2 coronavirus sequences using informative subtype markers for pandemic spread visualization. (cdc.gov)

Non-parametric image statistics are used to transfer reflectance properties from a static example set to a dynamic image sequence. (jvrb.org)
A video object-tracking component enables image sequence segmentation, and this subsystem is based on motion estimation, spatial segmentation, object projection, region classification, and user interaction. (dcu.ie)

Our results showed that the coding sequence of EZH2 was 2241 bp, encoding 746 amino acids. (hindawi.com)

So, the sequence corresponds to the decimal representation of pi, where each digit in the sequence represents the index in the decimal representation of pi. (evolutionnews.org)
Put ( ' without decimal digits in hex representation. (rosettacode.org)
499 without decimal digits in hex representation. (rosettacode.org)

In this chapter, we present a computational-based framework for the representation of social interactions. (oreilly.com)
A DNA molecule forms a double-helix where the complementary interactions between bases strike a balance between stability (protecting the integrity of the double helix) and accessibility (for instance, the bases need to be accessible when reading the DNA sequence). (lu.se)
Protein folding, going from sequence to structure by mini- a quadratic Hamiltonian requires additional spin variables and mizing an energy function, represents a difficult optimization implementing interactions such as self-avoidance becomes problem. (lu.se)

This research investigates the development of the adaptive case-based learning model and the case adaptation mechanism provided with adaptive, systematic and adaptable characteristics to meet the aforementioned learning requirements, in which the teachers are viewed as major learners, and the practical knowledge like teaching narrations are presented as learning cases. (ncl.edu.tw)
The results of this research provide the pedagogic assistance and reference, so as to support exact practical knowledge content in the adaptive case-based learning model, as well as make learners keep their learning motives with generating the further adapted learning content automatically. (ncl.edu.tw)

The results revealed that all students presented control over the base ten concepts by using strategies of pointing to objects and/or naming the sequenced numbers and manipulative materials in order to organize addition/subtraction operations in the multi-digits problem resolutions, orally. (bvsalud.org)

Process-based management is a management approach that views a business as a collection of processes, managed to achieve a desired result. (wikipedia.org)
We evaluate our approach for relighting 3D model sequences reconstructed from multiple view video. (jvrb.org)

The sequence-to-structure and structure-to-sequence relation is critical for predicting protein structure. (medscimonit.com)

If the range is not defined, it defaults to the complete sequence. (metacpan.org)

Folding a protein sequence into its minimum-energy structure represents such a problem. (lu.se)

Anatomy28

Organisms9

Diseases2

Chemicals and Drugs34

Analytical, Diagnostic and Therapeutic Techniques and Equipment38

Psychiatry and Psychology59

Phenomena and Processes67

Disciplines and Occupations6

Anthropology, Education, Sociology and Social Phenomena1

Technology, Industry, Agriculture1

Humanities3

Information Science36

Health Care10

Bidirectional Encoder Representations2

Alignments6

International Conference on Learning Representations1

Proteins10

Data38

Phylogenetic3

Methylation1

High-throughput1

Genomic3

Numerical4

Nucleotide1

Locus2

Algorithms2

Matching principle1

Viruses4

Chromosomal1

Methods7

Bioinformatics1

Biological1

Alignment2

Spectral5

Molecule's3

Traditionally1

Researchers5

Gene3

Algorithm3

Graphical representation1

NCBI2

Similarity2

Taxonomy2

Transformers1

BERT2

Structures4

Polymerase4

Insertions1

Secondary1

Neural3

Classifier1

Illustrate1

Structural1

Prediction4

Lattice protein1

Observations4

Method7

Analysis6

Graph2

Nucleic1

Transformer-based1

Analyses2

Inputs1

Residue2

Vice versa2

Positional2

Annotations2

Visualization2

Image sequence2

Amino acids1

Decimal3

Interactions3

Adaptive2

Results revealed1

Approach2

Protein structure1

Complete sequence1

Represents1