TranscriptomeGene Expression ProfilingHigh-Throughput Nucleotide SequencingSequence Analysis, RNAMolecular Sequence AnnotationOligonucleotide Array Sequence AnalysisExpressed Sequence TagsSequence Analysis, DNAGene LibraryContig MappingGene Expression Regulation, PlantGene OntologyGenomicsCluster AnalysisComputational BiologyDatabases, GeneticTranscription, GeneticGenes, PlantGenomeSoftwareRNA, PlantRNA, MessengerMicroarray AnalysisMetagenomicsReverse Transcriptase Polymerase Chain ReactionGenome, PlantProteomeBase SequenceAlgorithmsGene Regulatory NetworksGene Expression RegulationGene Expression Regulation, BacterialReproducibility of ResultsMolecular Sequence DataGenome, HumanPhylogenySequence AlignmentArabidopsisRNA IsoformsStress, PhysiologicalReadingMetabolic Networks and PathwaysChromosome MappingAlternative SplicingPlant RootsDNA, ComplementaryRNADatabases, Nucleic AcidGene Expression Regulation, DevelopmentalRNA, UntranslatedPlant LeavesReal-Time Polymerase Chain ReactionMicroRNAsINDEL MutationPolymorphism, Single NucleotideGenome, BacterialPlant ProteinsMicrosatellite RepeatsSpecies SpecificityCicerModels, GeneticSignal TransductionEvolution, MolecularExonsBiosynthetic PathwaysFlowersTranscription FactorsMetabolomeGene FusionOpen Reading FramesMultigene FamilyOryza sativaOrgan SpecificityRNA, Small UntranslatedUntranslated RegionsGene ExpressionGenome, FungalGene Expression Regulation, FungalInternetRNA, AntisenseHost-Pathogen InteractionsPrincipal Component AnalysisGenetic VariationPlant DiseasesGossypiumDroughtsSalinityRNA, BacterialRegulonHemipteraMutationPhenotypeBacterial ProteinsGenetic MarkersSequence AnalysisGenes, InsectMetagenomeInsect ProteinsDNA, PlantNucleotide Motifs