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Bacteria, AerobicBacteriaGram-Negative Aerobic BacteriaNucleic Acid HybridizationBase SequenceRNA, Ribosomal, 16SRNA, MessengerBacteria, AnaerobicAerobiosisPhylogenyDNA, RibosomalDNAMolecular Sequence DataGram-Positive BacteriaDNA, BacterialRNAGram-Negative BacteriaSoil MicrobiologyBase CompositionSequence Analysis, DNARNA, BacterialBiodegradation, EnvironmentalAnaerobiosisGenes, rRNARNA, Small InterferingRNA, ViralGram-Negative Aerobic Rods and CocciWater MicrobiologySeawaterFatty AcidsGeologic SedimentsBacterial Typing TechniquesEscherichia coliSpecies SpecificityRNA EditingBacterial ProteinsRNA SplicingBacteroides fragilisRNA, RibosomalCulture MediaBacterial InfectionsEnterobacteriaceaeColony Count, MicrobialGene Transfer TechniquesAnti-Bacterial AgentsBacteriological TechniquesActinomycetalesBacteroidesGene Transfer, HorizontalPeptostreptococcusBacillusPseudomonasAmino Acid SequenceGammaproteobacteriaRhodobacteraceaeRNA, TransferFungiBacteroidetesDNA-Directed RNA PolymerasesSphingomonasBacteroides InfectionsAlphaproteobacteriaSodium ChlorideRNA InterferenceTemperatureRNA VirusesPhenotypeOxidation-ReductionSewageHydrogen-Ion ConcentrationEmbryo TransferMicrobial Sensitivity TestsRNA, Double-StrandedFood MicrobiologyFecesQuinonesMetronidazoleRNA, CatalyticKoreaBacterial Physiological PhenomenaGenome, BacterialProteobacteriaMutationGenes, BacterialStaphylococcusRNA FoldingRNA Polymerase IINucleic Acid ConformationEvolution, MolecularPoriferaKineticsRNA, FungalMetagenomePlasmidsRNA StabilityModels, MolecularRNA, AntisenseSymbiosisSequence Homology, Amino AcidCytophaga
AnaerobicRibosomalPhototrophic bacteriaPATHOGENIC BACTERIAMicrobiotaBacterialProteobacteriaGenomesArchaeaEnterococcusMicroorganismsGenesPolymeraseBacteroidetesFungiFacultativelyTaxonomicOxidationGram-PositiveGenusRRNARespirationFaeciumAbundantSpeciesZhangAbundanceGeneDiversity2018EukaryoticBelongRegulatoryPeptidoglycanMicrobialResistanceFoundConditionsOrganic matterLargeHostGroupKingdomProcess
Anaerobic3
  • Did it originate under initially anaerobic or aerobic conditions? (biomedcentral.com)
  • A Gram-stain-positive, facultatively anaerobic, spore-forming, motile with unipolar biflagella, rod-shaped, indole acetic acid-producing bacterium, named LD4P30T, was isolated from a root of Suaeda salsa collected in Inner Mongolia, northern China. (bvsalud.org)
  • Lactobacillus is a genus of rod-shaped, facultatively anaerobic or microaerophilic bacteria found in association with animal guts and other tissues. (fieldofscience.com)
Ribosomal2
  • Furthermore, it has been found that the GC-content of ribosomal RNA (the traditional phylogenetic marker for prokaryotes) little reflects the GC-content of the genome. (wikipedia.org)
  • 1995. Relationship of a novel bacterial fish pathogen to Streptobacillus moniliformis and the fusobacteria group, based on 16S ribosomal RNA analysis. (fieldofscience.com)
Phototrophic bacteria2
PATHOGENIC BACTERIA9
  • Examples of pathogenic bacteria and their corresponding diseases. (termpaperwarehouse.com)
  • Pathogenic bacteria are bacteria that cause bacterial infection. (termpaperwarehouse.com)
  • Below is a table of some pathogenic bacteria and their corresponding diseases. (termpaperwarehouse.com)
  • Although previous studies have analyzed bacterial diversity and community composition in marine ecosystems, some focused on the relationship between pathogenic bacteria and the composition of bacterial communities in sewage outfalls. (researchsquare.com)
  • The interactions between four pathogenic bacteria ( E. coli , Enterococcus , Staphylococcus aureus , fecal coliforms) isolated from the sewage outfall and the bacterial diversity were investigated in the sea adjacent to the Xinghai sewage outlet, China to illustrate the influence of pathogenic bacteria on the bacterial community structure. (researchsquare.com)
  • Higher bacterial diversity was observed in the sewage outlet, and the abundance of pathogenic bacteria and bacterial diversity generally decreased with the increase in the distance from the sewage outlet. (researchsquare.com)
  • The above suggested that pathogenic bacteria may affect the bacterial community structure in the sea adjacent to the sewage outlet besides environmental factors. (researchsquare.com)
  • A large number of microorganisms, especially pathogenic bacteria in land-based sewage, could cause serious environmental problems when discharged into the adjacent sea through the sewage outlet. (researchsquare.com)
  • 2018 ), which may promote the pathogenic bacteria growth and also affect the microbial flora in the environment. (researchsquare.com)
Microbiota1
  • However, dominant and subordinate individuals of Arctic charr harboured distinct aerobic microbiota associated with intestinal mucosa [ 9 ], suggesting that social interaction may affect autochthonous gut microbiota in individuals cohabiting in the same tank. (biomedcentral.com)
Bacterial3
  • Bacteriophages (phages), viruses that infect and replicate within bacteria, are important in both natural and human microbiomes because they prey on bacterial hosts, mediate horizontal gene transfer, alter host metabolism and redistribute bacterially derived compounds via host cell lysis 1 . (nature.com)
  • This is because many patients with SBP show negative bacterial cultivation from ascites, while in many other patients, viable bacteria can be cultivated in the absence of peritonitis, so-called bacterascites ( 3 ). (frontiersin.org)
  • Bacteria found in yogurt that, when ingested, helps restore the normal bacterial populations in the human digestive system. (w8mdspa.com)
Proteobacteria2
  • Alphaproteobacteria is a class of bacteria in the phylum Pseudomonadota (formerly Proteobacteria). (wikipedia.org)
  • Maximum likelihood (ML) 16S rRNA gene phylogenetic tree showing the placement of the genus Schineria ( boldface ) and the isolate ADV1107.05 ( underlined ) in the phylum Proteobacteria. (cdc.gov)
Genomes3
  • A species of technological interest is Rhizobium radiobacter (formerly Agrobacterium tumefaciens): scientists often use this species to transfer foreign DNA into plant genomes. (wikipedia.org)
  • In the present study, we reconstructed large phage genomes from freshwater lakes known to contain bacteria that oxidize methane. (nature.com)
  • A notable example is the replacement of an original multi-subunit bacteria-like RNA polymerase (inherited from the proto-mitochondrial ancestor and still encoded in certain jakobid - but no other - mitochondrial genomes) by a single-subunit bacteriophage T3/T7-like RNA polymerase, which directs mitochondrial transcription in virtually all eukaryotes [ 24 ]. (biomedcentral.com)
Archaea2
  • Microorganisms of various types exist in all three domains of life (the Bacteria, Archaea, and Eukarya), and they are by far the most abundant life forms on Earth. (researchgate.net)
  • iPHoP: A Matchmaker for Phages and their Hosts Building on existing virus-host prediction approaches, a new tool combines and evaluates multiple predictions to reliably match viruses with their archaea and bacteria hosts. (doe.gov)
Enterococcus2
  • It can be accessed online at www.helmholtz-hiri.de/en/datasets/enterococcus through an instance of the genomic viewer JBrowse. (frontiersin.org)
  • As seen with many other bacteria, RNA-seq technology has now become the method of choice for transcriptome analysis in the enterococcus. (frontiersin.org)
Microorganisms2
  • Marine microorganisms play a crucial role in the marine ecosystem and biogeochemistry due to their diversity, wide distribution, and strong adaptability (Lima-Mendez et al. (researchsquare.com)
  • Therefore, it is essential to understand the abundance, diversity, and community structure of microorganisms in the ocean (Gilbert et al. (researchsquare.com)
Genes9
  • Viruses are also considered to be potential reservoirs of antibiotic resistance genes (ARGs) and the delivery agents for horizontal gene transfer (HGT) of ARGs in the environment [ 7 , 12 ]. (biomedcentral.com)
  • The expression of genes encoding formate uptake transporter (PG0209) and formate tetrahydrofolate ligase ( fhs ) was drastically elevated, which indicates that formate metabolism plays a major role under aerobic conditions. (microbiologyresearch.org)
  • Also, genes encoding gingipain protease secretion/maturation regulator ( porR ) and protease transporter ( porT ) had reduced expression in the presence of oxygen, which also correlated with reduced protease activities under aerobic conditions. (microbiologyresearch.org)
  • Analyzing bacteria in late exponential phase, we capture ~40% ( E. faecalis ) and 43% ( E. faecium ) of the annotated protein-coding genes, determine 5′ and 3′ UTR (untranslated region) length, and detect instances of leaderless mRNAs. (frontiersin.org)
  • A better understanding of how these species cause disease and spread antibiotic resistance requires a knowledge of how its genes are controlled, on both the DNA and the RNA level. (frontiersin.org)
  • Other genes in the trichothecene biosynthetic pathway have been cloned including the tri3 gene, encoding a 15-O-acetyltransferase, from Fusarium sporotrichioides (McCormick et al. (justia.com)
  • The degradation pathway of 2,4,6-trichlorophenol (2,4,6-TCP), a hazardous pollutant, in the aerobic bacterium Cupriavidus necator JMP134(pJP4) (formerly Ralstonia eutropha JMP134) is encoded by the tcp genes. (lookformedical.com)
  • pMOL28 contains a backbone of maintenance and transfer genes resembling those found in plasmid pSym of C. taiwanensis and plasmid pHG1 of C. eutrophus, suggesting that they belong to a new class of plasmids. (lookformedical.com)
  • Streamlining Regulon Identification in Bacteria Regulons are a group of genes that can be turned on or off by the same regulatory protein. (doe.gov)
Polymerase1
Bacteroidetes1
  • Interestingly, we found that HmuY is similar to proteins encoded in several different species belonging to the Bacteroidetes phylum, which consists of three classes: Bacteroidetes, Flavobacteria, and Sphingobacteria [23]. (erksignal.com)
Fungi3
  • A phylum of fungi which have cross-walls or septa in the mycelium. (lookformedical.com)
  • Most pathogenic fungi with a known perfect state belong to this phylum. (lookformedical.com)
  • Supercharging SIP in the Fungal Hyphosphere Applying high-throughput stable isotope probing to the study of a particular fungi, researchers identified novel interactions between bacteria and the fungi. (doe.gov)
Facultatively1
  • A gram-negative, facultatively chemoautotrophic bacterium, formerly called Wautersia eutropha, found in water and soil. (lookformedical.com)
Taxonomic1
  • The following taxa have been assigned to the Alphaproteobacteria, but have not been assigned to one or more intervening taxonomic ranks: Orders not assigned to a subclass Minwuiales Sun et al. (wikipedia.org)
Oxidation1
  • In incubation experiments involving the addition of light and/or oxygen, CH 4 oxidation rates in the anoxic hypolimnion were enhanced 3-fold, suggesting a major role for photosynthetically fueled aerobic CH 4 oxidation. (copernicus.org)
Gram-Positive1
  • sex pilus to attach to other bacteria Resistance increased by the type of cell wall, and presence of endospore, capsules, slime layers Toxin the lipopolysaccharide upper layer of Gram negative bacteria is released as toxins Taxonomy Domain : Bacteria Kingdom: Monera Phyla : Firmicutes Gram-Positive e.g. cocci Staphylococcus Streptococcus bacilli Lactobacillus Gracilicutes Gram-Negative e.g. cocci bacilli spirochete obligate intracellular parasites Tenericutes No Cell Wall e.g. (termpaperwarehouse.com)
Genus4
RRNA1
  • The pyrosequencing of 16S rRNA gene fragments allowed Roeselers et al. (biomedcentral.com)
Respiration1
  • Mitochondria have a double membrane structure and use aerobic respiration to generate adenosine triphosphate (ATP), which is used throughout the cell as a source of chemical energy . (wikipedia.org)
Faecium1
Abundant2
  • Members of the other two classes are mainly aerobic and abundant in many freshwater and marine systems (data not shown). (erksignal.com)
  • The phyla and were highly abundant, and and were also prominent. (microbial-ecology.net)
Species1
Zhang2
Abundance1
  • Seasonal and spatial differences in environmental parameters (usually within short distances) have a significant impact on the microbial abundance and community structure (Gilbert et al. (researchsquare.com)
Gene3
  • This comprehensive global TSS mapping atlas provides a valuable resource for RNA biology and gene expression analysis in the Enterococci. (frontiersin.org)
  • the tri4 gene, encoding a cytochrome P450 monooxygenase, from Fusarium sporotrichioides (Hohn et al. (justia.com)
  • the tri6 gene, encoding a zinc finger protein involved in the regulation of trichothecene biosynthesis, from Fusarium sporotrichioides (Proctor et al. (justia.com)
Diversity4
  • The basal group is Magnetococcidae, which is composed by a large diversity of magnetotactic bacteria, but only one is described, Magnetococcus marinus. (wikipedia.org)
  • In this study, the sewage outlet of Dalian Xinghai Bathing Beach was used as the research area, and the seasonal temporal and spatial changes of the microbial diversity and community structure in the sewage from the sewage outlet and the adjacent sea area were analyzed, and the propagation and diffusion of four significant bacteria in the sewage during the discharge process were explored. (researchsquare.com)
  • A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks Researchers combed through more than 5,000 data sets of RNA sequences generated from diverse environmental samples around the world, resulting in a five-fold increase of RNA virus diversity. (doe.gov)
  • The phylum Apicomplexa comprises human pathogens such as Plasmodium but is also an under-explored hotspot of evolutionary diversity central to understanding the origins of parasitism and non-photosynthetic plastids. (elifesciences.org)
20181
  • 2018 Genera not assigned to a family "Candidatus Anoxipelagibacter" Ruiz-Perez et al. (wikipedia.org)
Eukaryotic1
  • Moreover, the class is sister to the protomitochondrion, the bacterium that was engulfed by the eukaryotic ancestor and gave rise to the mitochondria, which are organelles in eukaryotic cells (See endosymbiotic theory). (wikipedia.org)
Belong1
Regulatory1
  • Despite their critical implication in worldwide public healthcare, essential and available resources such as deep transcriptome annotations remain poor, which also limits our understanding of post-transcriptional control small regulatory RNA (sRNA) functions in these bacteria. (frontiersin.org)
Peptidoglycan1
  • Both strains were Gram-stain-positive and filamentous bacteria which contained LL-diaminopimelic acid in cell-wall peptidoglycan and glucose and ribose in whole-cell hydrolysates. (bvsalud.org)
Microbial2
  • By infecting and lysing host cells, viruses can affect the composition of microbial populations and facilitate the transfer of organic matter from cells to the dissolved organic matter pool via the "viral shunt" [ 9 ], and when consumed by small phagotrophs, viruses facilitate the movement of organic matter into the classical food web, which is called the "viral sweep" [ 10 ]. (biomedcentral.com)
  • The development of high-throughput sequencing technology can obtain the microbial community structure from environmental samples, thus circumventing these challenges (Goldfeder et al. (researchsquare.com)
Resistance1
  • Aerobic blood culture, after 1 day of incubation, was positive for strain ADV4155.05, which displayed the same phenotype as strain ADV1107.05 except for tetracycline resistance. (cdc.gov)
Found4
  • In addition, Earth life is possible outside the bounds of extreme conditions found on Earth (for example, the bacterium Deinococcus radiodurans can tolerate levels of radiation not found naturally on present-day Earth, and Escherichia coli apparently can tolerate hydrostatic pressures greater than 10 times the pressures in the deepest ocean trenches 1 , 2 ). (nationalacademies.org)
  • The transcriptome maps revealed sRNA candidates in both bacteria, some found in previous studies and new ones. (frontiersin.org)
  • On the basis of our mutational analysis of HmuY heme ligands [20], an initial step in Rigosertib clinical trial heme transfer could involve disruption of only one of the two axial histidine ligands, as found for Serratia marcescens hemophore HasA [22]. (erksignal.com)
  • The Lactobacillales are a group of acid-tolerant, low-G+C bacteria, commonly found in decomposing plants and milk products, that obtain energy through the fermentation of carbohydrates to produce lactic acid. (fieldofscience.com)
Conditions3
  • However, imitating the specific environmental conditions for bacteria from the ocean was the main obstacle in research. (researchsquare.com)
  • These bacteria are characterized not only by their ability to resist harsh conditions (extreme pH, ionizing radiation, osmotic, oxidative stress, dramatic temperature changes, etc.), they also have a "Janus face" behavior in that they can turn from a commensal into a causative agent of invasive infections. (frontiersin.org)
  • Learning from Bacteria about Social Networks - video Description: Bacteria do not store genetically all the information required to respond efficiently to all possible environmental conditions. (uncommondescent.com)
Organic matter1
  • The sea area adjacent to the sewage outlet contains relatively high levels of organic matter and nutrients (Suzuki et al. (researchsquare.com)
Large1
Host1
  • A pathogen is a microorganism - in the widest sense, such as a virus, bacterium, prion, or fungus - that causes disease in its host. (termpaperwarehouse.com)
Group1
  • There are many different kinds of bacteria that are all separated into different types and groups, each group having its very own unique qualities that sets it apart from all the rest. (termpaperwarehouse.com)
Kingdom1
  • Many consider Oomycetes (Oomycota) a phylum in the kingdom Stramenopila, or alternatively, as Pseudofungi in the phylum Heterokonta of the kingdom Chromista. (lookformedical.com)
Process2
  • Material and methods 5 3.1 Bacteria strain and medium 5 3.2 Inoculum preparation 5 3.3 Batch cultivations 5 3.4 Freeze-drying process 5 3.5 Analytical methods 6 3.6 Statistical analyses 8 3. (termpaperwarehouse.com)
  • It is also defined as: The process of transfer of fluids (vapors or liquid) through a geologic formation in response to a pressure gradient that may be caused by changes in barometric pressure, water table levels, wind fluctuations, or infiltration. (itrcweb.org)