SoftwareComputer SimulationAlgorithmsDNA-Binding ProteinsMolecular Sequence DataDNABase SequencePeptide Nucleic AcidsProtein BindingBinding SitesAmino Acid SequenceDNA, Single-StrandedTranscription FactorsMolecular Dynamics SimulationNucleic Acid ConformationModels, MolecularPromoter Regions, GeneticTranscription, GeneticEscherichia coliCarrier ProteinsNuclear ProteinsPoly(A)-Binding ProteinsSoftware DesignProtein Structure, TertiaryBacterial ProteinsMutationRepressor ProteinsDNA HelicasesProtein ConformationModels, BiologicalOligodeoxyribonucleotidesCell LineDNA, ViralSoftware ValidationRNAKineticsViral ProteinsOligonucleotidesSequence Homology, Amino AcidCloning, MolecularDNA ReplicationNucleic Acid ProbesSequence AlignmentPlasmidsHeLa CellsRecombinant Fusion ProteinsZinc FingersElectrophoretic Mobility Shift AssayNucleic Acid Amplification TechniquesCell NucleusReplication Protein ATranscriptional ActivationTrans-ActivatorsGene Expression RegulationThermodynamicsRNA, MessengerRecombinant ProteinsNucleic Acid DenaturationModels, GeneticMonte Carlo MethodNucleic Acid HybridizationDNA, BacterialDNA PrimersPoly TRNA-Binding ProteinsProtein Structure, SecondaryEscherichia coli ProteinsDimerizationUser-Computer InterfaceTacrolimus Binding ProteinsTransfectionProteinsElectrophoresis, Polyacrylamide GelMolecular WeightComputational BiologyPolymerase Chain ReactionModels, ChemicalSaccharomyces cerevisiae ProteinsPatient SimulationSequence Analysis, DNASaccharomyces cerevisiaeTemperatureStructure-Activity RelationshipBinding, CompetitiveModels, StatisticalCCAAT-Enhancer-Binding ProteinsDNA FootprintingPoly(A)-Binding Protein ISequence Homology, Nucleic AcidCrystallography, X-RayRegulatory Sequences, Nucleic AcidMacromolecular SubstancesSubstrate SpecificityPolydeoxyribonucleotidesDNA ProbesConsensus SequenceFungal ProteinsReproducibility of ResultsMutagenesis, Site-DirectedNFI Transcription Factors