Furthermore, in Arabidopsis, nearly 20% of the nuclear genome originate from cyanobacterium, the highly recognized origin of chloroplasts. (wikipedia.org)
Most heritable information in eukaryotic cells is encoded in the nuclear genome, with inheritance patterns following classic Mendelian segregation. (nature.com)
We then describe the evolution of genomic organisation across lineages, how this process has been shaped by interactions with the nuclear genome and population genetics dynamics. (nature.com)
target enrichment of nuclear genes combined to plastid genome skimming (Hyb-Seq) and restriction site-associated DNA sequencing (RAD-seq). (uni-goettingen.de)
Hybridization and genome size evolution: timing and magnitude of nuclear DNA content increases in Helianthus homoploid hybrid species. (scielo.br)
High-level expression of the HIV entry inhibitor griffithsin from the plastid genome and retention of biological activity in dried tobacco leaves. (mpg.de)
Here, we extend the recently described Genome BLAST Distance Phylogeny (GBDP) strategy to compute phylogenetic trees from all completely sequenced plastid genomes currently available and from a selection of mitochondrial genomes representing the major eukaryotic lineages. (biomedcentral.com)
In plants, DNA is found in three genomes: plastid genome (plastome), mitochondrial genome (mitogenome), and nuclear genome. (koneensaatio.fi)
We find that the nuclear genome contains a significant amount of NUMTs (nuclear integrants of mitochondrial DNA) and NUPTs (nuclear integrants of plastid DNA) that are continuously acquired and represent a significant source of intraspecific genetic variation. (bvsalud.org)
NUOT (nuclear DNA of organellar origin) accretion has generated 1.6% of the extant T. gondii ME49 nuclear genome-the highest fraction ever reported in any organism. (bvsalud.org)
Sequences11
Environmental sequences of ten novel plastid lineages and structural innovations in plastid proteins confirm that plastids in apicomplexans and their relatives are widespread and share a common, photosynthetic origin. (elifesciences.org)
Phylogenetic analyses of representative species from the five genera of Winteraceae (Drimys Pseudowintera Takhtajania Tasmannia and Zygogynum s.l.) were performed using ITS nuclear sequences and a combined data-set of ITS + psbA-trnH + rpS16 sequences (sampling of 30 and 15 species respectively). (lianaecologyproject.com)
Phylogenetic relationships in Leymus (Poaceae: Triticeae) revealed by nuclear ribosomal internal transcribed spacer and chloroplast trnL-F sequences. (degruyter.com)
Phylogenetic relationships between Hystrix and its closely related genera (Poaceae: Triticeae) based on nuclear Acc1, DMC1 and chloroplast trnL-F sequences. (degruyter.com)
Phylogenetic analysis of Leymus (Poaceae: Triticeae) inferred from nuclear rDNA ITS sequences. (degruyter.com)
DNA sequences of 1 nuclear and 5 chloroplast genes of 684 samples of clubmosses worldwide representing ca. 300 (40% of total) species were used to uncover the relationships within the family and to study the evolution of 10 morphological characters for the first time. (wreg.com)
In a recent study, one American and one Chinese researchers employed DNA sequences from 1 nuclear and 5 chloroplast genes across 684 global clubmoss samples. (wreg.com)
Molecular phylogenetic analysis of Passifloraceae sensu lato (Malpighiales) based on plastid and nuclear DNA sequences. (wikimedia.org)
2004. Phylogeny of Pleione (Orchidaceae) and parentage analysis of its hybrids based on plastid and nrITS sequences and morphological data. (people.su)
Primer development - Selected sequences of the plastid ndhF and nuclear PepC genes for Bignonieae from Lohmann ( 2006 ) were combined with newly generated sequences for the plastid rpl32-trnL intergenic spacer region following Shaw et al. (bioone.org)
Here we include new sequences of Myrrhinium atropurpureum in a comprehensive molecular phylogeny based on a balanced sample of two plastid and two nuclear markers, with the aim of providing the historical framework of pollination by frugivorous birds in Myrteae. (peerj.com)
Mitochondrial2
Monophyletic origin of plastids: plastid, mitochondrial, and nuclear genes are related in the plastid bearing organisms. (elte.hu)
Our results indicate that, at this taxonomic level, plastid genomes are much more valuable for inferring phylogenies than are mitochondrial genomes, and that distances based on breakpoints are of little use. (biomedcentral.com)
AtSAL1 phosphatase activity is suppressed by dimerization, intramolecular disulfide formation, and glutathionylation, allowing accumulation of its substrate, PAP, a chloroplast stress retrograde signal that regulates expression of plastid redox associated nuclear genes (PRANGs). (nih.gov)
Phylogeny3
Simplified maximum likelihood phylogeny of Selaginellaceae based on plastid rbcL and five nuclear markers. (wreg.com)
A 27-taxon phylogeny of Plagiothecium based on nuclear ITS and plastid rpl16 intron DNA sequence data resolved Austrian and Chinese populations of P. handelii as sisters, in a clade with P. paleaceum, a julaceous Himalayan species with cochleariform leaves. (bioone.org)
2004. An expanded plastid DNA phylogeny of Orchidaceae and analysis of jacknife branch support strategy. (people.su)
Genomes3
Although previously unrecognized, plastids in deep-branching apicomplexans are common, and they contain some of the most divergent and AT-rich genomes ever found. (elifesciences.org)
Finally, we discuss how both nuclear and cytoplasmic genomes have evolved to co-inhabit the same host cell via one of the longest symbiotic processes, and all the opportunities for intergenomic conflict that arise due to divergence in inheritance patterns. (nature.com)
NGS has made possible to produce around 222 complete fern plastomes, two mitogenomes and two nuclear genomes. (koneensaatio.fi)
PsbA-trnH1
To investigate the phylogenetic relationship of these Tulipa species a Bayesian analysis was undertaken using the ITS nuclear marker and trnL-trnF, rbcL and psbA-trnH plastid markers. (cam.ac.uk)
Sequence data3
Poaceae) based upon plastid and nuclear sequence data and structural data. (wikimedia.org)
2000. A phylogenetic analysis of Laeliinae (Orchidaceae) based on sequence data from internal transcribed spacers (ITS) of nuclear ribosomal DNA. (people.su)
2002. Molecular phylogenetics of Cymbidium (Orchidaceae: Maxillarieae): sequence data from Internal Transcribed Spacers (ITS) of nuclear ribosomal DNA and plastid matK. (people.su)
Endosymbiotic3
There are many types of plastids in plants alone, but all plastids can be separated based on the number of times they have undergone endosymbiotic events. (wikipedia.org)
Although the cyanobacterium had not been completely engulfed in the eukaryotic organism, the relationship is thought to demonstrate the precursor to endosymbiotic primary plastids. (wikipedia.org)
Using the most treelike distance matrices, as judged by their δ values, distance methods are able to recover all major plant lineages, and are more in accordance with Apicomplexaorganelles being derived from "green" plastids than from plastids of the "red" type. (biomedcentral.com)
Proteins1
We show here that PLASTID REDOX INSENSITIVE 2 (PRIN2) and CHLOROPLAST STEM-LOOP BINDING PROTEIN 41 kDa (CSP41b), two proteins identified in plastid nucleoid preparations, are essential for proper plant embryo development. (frontiersin.org)
Photosynthetic2
The phylum Apicomplexa comprises human pathogens such as Plasmodium but is also an under-explored hotspot of evolutionary diversity central to understanding the origins of parasitism and non-photosynthetic plastids. (elifesciences.org)
Most plastids are photosynthetic, thus leading to color production and energy storage or production. (wikipedia.org)
Gene2
Poaceae) based on a single-copy nuclear gene encoding plastid acetyl-CoA carboxylase. (degruyter.com)
Extensive Posttranscriptional Regulation of Nuclear Gene Expression by Plastid Retrograde Signals. (mpg.de)
Polymerase1
a plastid-encoded bacterial-type RNA polymerase (PEP) and a nuclear-encoded phage-type RNA polymerase (NEP), which recognize distinct types of promoters. (frontiersin.org)
Eukaryotes2
In eugregarines, however, plastids are either abnormally reduced or absent, thus increasing known plastid losses in eukaryotes from two to four. (elifesciences.org)
Both plant and animal cells are eukaryotes (The eukaryotic cell has a nuclear membrane that surrounds the nucleus). (myguitarsolo.com)
Newly generated1
nov., and newly generated nuclear and plastid molecular data for most of the family's species and its outgroup. (uni-muenchen.de)
Chloroplasts1
However, the division of labor between PEP and NEP during plastid development and in mature chloroplasts is unclear. (frontiersin.org)
Molecular1
Chloroplast biogenesis and function is essential for proper plant embryo and seed development but the molecular mechanisms underlying the role of plastids during embryogenesis are poorly understood. (frontiersin.org)
Organelles1
Cytoplasmically inherited elements vary in their level of integration with the host - in the case of organelles, the proteome is jointly encoded in nuclear and organellar DNA, in addition to integration into cellular physiology. (nature.com)
Organisms1
A plastid is a membrane-bound organelle found in plants, algae and other eukaryotic organisms that contribute to the production of pigment molecules. (wikipedia.org)
Eukaryotic1
The first plastid is highly accepted within the scientific community to be derived from the engulfment of cyanobacteria ancestor into a eukaryotic organism. (wikipedia.org)
Membrane1
When the cyanobacteria became engulfed, the bacterium avoided digestion and led to the double membrane found in primary plastids. (wikipedia.org)
Data1
Based on the plastid and nuclear DNA data, I inferred historical processes that may have shaped the evolution of the Caricaceae and explain their current geographic distribution. (uni-muenchen.de)
Primary1
Plastids are also the location of a number of vital metabolic pathways, including primary carbon metabolism and the biosynthesis of fatty acids, amino acids, and tetrapyrroles. (frontiersin.org)
Distinct1
It reveals functionally distinct plastid and chloroplast development stages, identifies processes occurring in each of them, and highlights our very limited knowledge of the earliest drivers of plastid biogenesis, while providing a basis for their future identification. (biomedcentral.com)
Machinery1
We show that the first phase of plastid development begins with organelle proliferation, which extends well beyond cell proliferation, and continues with the establishment and then the build-up of the plastid genetic machinery. (biomedcentral.com)
Histone1
Light alters histone methylation in plants via nuclear α-ketoglutarate dehydrogenase. (bvsalud.org)
Environmental1
We show that nuclear targeting is regulated by environmental signals and that KGDH is enriched at thousands of loci in Arabidopsis thaliana. (bvsalud.org)