• Outside BASE, align the new sequences to genome or transcript sequences and calculate "intensities" for each gene on the "array design" and dump into a tab delimited raw data file. (lu.se)
  • http://ijgvd.megabank.tohoku.ac.jp/ ) provides genomic variation data detected by whole-genome sequencing (WGS) of Japanese individuals. (nature.com)
  • 13 The sequence reads were mapped onto the human reference genome, assembly GRCh37/hg19, with decoy sequences (hs37d5) and an average sequencing coverage of 32.4× for full-length autosomal chromosomes. (nature.com)
  • Whole genome profiling (WGP) is a sequence-based physical mapping technology and uses sequence tags generated by next generation sequencing for construction of bacterial artificial chromosome (BAC) contigs of complex genomes. (frontiersin.org)
  • The physical map provides a framework for assembly of genome sequence and information for localization of genes that are difficult to find through positional cloning. (frontiersin.org)
  • To address the challenges of accurate assembly of the pea genome (∼4.2 GB of which approximately 85% is repetitive sequences), we have adopted the WGP technology for assembly of a pea BAC library. (frontiersin.org)
  • WGP TM technology has proved to provide a robust physical map of the pea genome, which would have been difficult to assemble using traditional restriction digestion based methods. (frontiersin.org)
  • This sequence-based physical map will be useful to assemble the genome sequence of pea. (frontiersin.org)
  • Additionally, the 1.1 million WGP tags will support efficient assignment of sequence scaffolds to the BAC clones, and thus an efficient sequencing of BAC pools with targeted genome regions of interest. (frontiersin.org)
  • However, understanding of quantitative traits and use of genomic tools for breeding is partly restricted by the large expected genome size of 3,947 to 4,397 Mbp/1C ( Arumuganathan and Earle, 1991 ) and the occurrence of highly repetitive sequences in the pea genome. (frontiersin.org)
  • WGP is designed based on the use of sequence tags generated by next generation sequencing (NGS) and is a powerful alternative to traditional DNA fingerprinting based physical mapping technologies, and also simultaneously generates a partial genome sequence. (frontiersin.org)
  • mskilab-org/JaBbA: MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data. (github.com)
  • JaBbA builds a genome graph based on junctions and read depth from whole genome sequencing, inferring optimal copy numbers for both vertices (DNA segments) and edges (bonds between segments). (github.com)
  • Conclusions Results suggested that the NGS approach based on AmpliSeq™ libraries and Ion Personal Genome Machine (PGM) sequencing is a highly efficient mutation detection method. (researchgate.net)
  • Deploying the Whole Genome Sequence In Medicine and Public Health, One Base Pair At A Time. (cdc.gov)
  • As cost and throughput of second-generation sequencers continue to improve, even modestly resourced research laboratories can now perform DNA sequencing experiments that generate hundreds of billions of nucleotides of data, enough to cover the human genome dozens of times over, in about a week for a few thousand dollars. (umd.edu)
  • First, that the Burrows-Wheeler Transform and the FM Index, previously used for data compression and exact string matching, can be extended to facilitate fast and memory-efficient alignment of DNA sequences to long reference genomes such as the human genome. (umd.edu)
  • These enzymes target specific genome sequences known as attachment sites, which function as "landing pads. (sflorg.com)
  • This allows them to target any site in the genome for insertion of the landing site, which contains 46 DNA base pairs. (sflorg.com)
  • What is whole genome sequencing (WGS)? (cdc.gov)
  • All organisms (bacteria, vegetable, mammal) have a unique genetic code, or genome, that is composed of nucleotide bases (A, T, C, and G). If you know the sequence of the bases in an organism, you have identified its unique DNA fingerprint, or pattern. (cdc.gov)
  • Whole genome sequencing is a laboratory procedure that determines the order of bases in the genome of an organism in one process. (cdc.gov)
  • How does whole genome sequencing work? (cdc.gov)
  • How has whole genome sequencing improved disease detection? (cdc.gov)
  • Since 2019, whole genome sequencing has been the standard PulseNet method for detecting and investigating foodborne outbreaks associated with bacteria such as Campylobacter , Shiga toxin-producing E. coli (STEC), Salmonella , Vibrio , and Listeria . (cdc.gov)
  • Since being launched, whole genome sequencing of pathogens in public health laboratories has improved surveillance for foodborne disease outbreaks and enhanced our ability to detect trends in foodborne infections and antimicrobial resistance. (cdc.gov)
  • Whole genome sequencing provides detailed and precise data for identifying outbreaks sooner. (cdc.gov)
  • As the use of whole genome sequencing expands, CDC's national surveillance systems and laboratory infrastructure must keep pace with the changing technology. (cdc.gov)
  • Whole genome sequencing is a fast and affordable way to obtain detailed information about bacteria using just one test. (cdc.gov)
  • The implementation of whole genome sequencing of pathogens for detecting and tracking foodborne outbreaks was made possible through collaborations with CDC's Advanced Molecular Detection (AMD) Office, Food Safety Office , and Antimicrobial Resistance Solutions Initiative . (cdc.gov)
  • Current diagnostic PCR assays target a variety of SARS CoV-2 genes and the vast majority target sequences in regions of the SARS CoV-2 genome that are highly conserved. (who.int)
  • To make a reference panel of genomic variation for the Japanese population, we sequenced whole genomes of 1,070 cohort participants, and detected genomic variants including SNVs, indels and structural variants. (nature.com)
  • Well, genomes aren't typically comprised of 25% of each base. (biostars.org)
  • Examples of this kind of meta data are secondary structures (RNA and protein), protein hydrophobicity assignments, or other alternative alphabets for polypeptides, sequence quality data and nucleotide alignments with translations. (metacpan.org)
  • This research team recently developed the world's first practical polymer sequencer quantifying the short monomer segments in specific sequences, herein called "codon" using an analogy from nucleotide triplets, via pyrolysis mass-spectra. (phys.org)
  • HuCaT uses an algorithm based on number of matching queries, k-mers are used to calculate the actual matching nucleic acid k-mers (short substrings of DNA [n 9 nt in number of nucleotide sequence matches for type assignment using the HuCaT]) to build alignments between query and reference sequences. (cdc.gov)
  • I'm just thinking out loud about how to incorporate high throughput transcriptome sequencing data into BASE. (lu.se)
  • Comparison of pCD-METRO open reading frames and phylogenetic analysis in study of sequence-based identification of metronidazole-resistant Clostridioides difficile isolates. (cdc.gov)
  • We conducted a phylogenetic analysis of the section, including samples of all species, using sequences of the ITS and ETS regions of nuclear ribosomal DNA. (bioone.org)
  • 2) test the utility of these sequences for phylogenetic construction of interspecific relationships. (uni-goettingen.de)
  • For multiple alignment, the BioEdit Sequence Alignment Editor version 7.0.5.3 (Hall 1999) was used and the phylogenetic analysis was carried out with PAUP* v4.0b10 (Swofford 1998). (uni-goettingen.de)
  • Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence. (microbiologyresearch.org)
  • Outputs include alignments and phylogenetic trees of the 12 top matching reference sequences for each query. (cdc.gov)
  • Noroviruses are associated with an compared to an established set of reference sequences to determine estimated 70,000-200,000 deaths annually [2,3 ] while sapoviruses genotypes and polymerase types based on phylogenetic clustering, or by primarily cause sporadic AGE in young children although outbreaks in employing NCBI BLAST web service. (cdc.gov)
  • Nucleic acid cytometry using droplet microfluidics identifies and sorts single cells, virus, or free molecules based on specific "keyword" sequences. (rsc.org)
  • In this project, the genomic DNA of 1,070 subjects obtained from peripheral blood samples was subjected to paired-end sequencing using the Illumina HiSeq 2500 platform. (nature.com)
  • WALTHAM, Mass.--( BUSINESS WIRE )--Pfizer and Thermo Fisher Scientific Inc. (NYSE: TMO) today announced they have entered into a collaboration agreement to help increase local access to next-generation sequencing (NGS)-based testing for lung and breast cancer patients in more than 30 countries across Latin America, Africa, the Middle East and Asia where advanced genomic testing has previously been limited or unavailable. (businesswire.com)
  • As more targeted therapies are available that can be matched through a broader set of genomic markers, next-generation sequencing is quickly replacing sequential, single biomarker tests. (businesswire.com)
  • The goal of this study was to develop a Fast Healthcare Interoperability Resources (FHIR)-based web app, NGS Quality Reporting (NGS-QR), to report and manage the quality of the information obtained from clinical NGS genomic tests. (jmir.org)
  • PCR and Sanger sequencing were performed for portions of the ITS2 and COI loci. (mendeley.com)
  • This identified approximately 140 chromosome loci where nucleotides deviated from the reference sequence GRCh37 hg19 comprising the three genes TRPV1, LTB4R and LTB4R2. (researchgate.net)
  • Analysis time is highly dependent on the complexity of the sample type and the analysis mode itself-there is a faster mode for viral and bacterial identification only or a more comprehensive mode that will align to all sequences in GenBank, Chiu explained. (genomeweb.com)
  • The 16S rRNA sequences of 128 valid and invalid Pseudomonas species, which included almost valid species of the genus Pseudomonas listed in the Approved Lists of Bacterial Names, were obtained: sequences of 59 species were determined and those of 69 species were obtained from the GenBank/EMBL/DDBJ databases. (microbiologyresearch.org)
  • That unbiased approach enables the team to detect and reconstruct the sequences of "nearly any and all pathogens, including viruses, bacteria, fungi, and parasites," Chiu said. (genomeweb.com)
  • Conclusion: The lack of clarity from COI sequence analysis highlights potential challenges of species identification within species complexes. (mendeley.com)
  • Nature uses sequence-defined polymers such as polypeptides to create biomaterials, encode information, perform biocatalysis, participate in molecular recognition, and shuttle species across membranes. (pnnl.gov)
  • Short sequence quantification via monomer rearrangement into periodic sequences repeating a single codon species. (phys.org)
  • Based on the fragment patterns, virtual copolymers repeating a single codon species are reconstructed via AI analysis, allowing the quantification of the codon composition in the analyte. (phys.org)
  • These sequences were compared with the sequences of other species of the Proteobacteria. (microbiologyresearch.org)
  • We describe isogenic colony sequencing (ICO-seq), a massively-parallel strategy to assess the gene expression profiles of large numbers of genetically distinct yeast colonies. (rsc.org)
  • Methods A next-generation sequencing (NGS) panel was created for the human TRPV1 gene and in addition, for the leukotriene receptors BLT1 and BLT2 recently described to modulate TRPV1 mediated sensitisation processes rendering the coding genes LTB4R and LTB4R2 important co-players in pharmacogenetic approaches involving TRPV1. (researchgate.net)
  • Create a BASE plugin to do the the alignment and quantification as in 3a, and load the numeric data into the database. (lu.se)
  • To exclude potential indirect targets of PKA, we built a computational model to characterize the kinase sequence specificity toward the substrate target site based on known kinase-substrate relationships. (nih.gov)
  • This class defines an abstract interface for basic residue-based meta information. (metacpan.org)
  • Since this sequence distribution is thought to greatly influence the material performance of copolymeric materials, the development of a polymer sequencer-an analytical method for quantitatively evaluating the distribution-had been awaited as a potentially effective tool toward innovative polymer materials. (phys.org)
  • The research team plans to investigate the correlation between sequence distribution and copolymer properties and develop sequence-controlled polymerization techniques, using the developed polymer sequencer as the key technology. (phys.org)
  • The NGS workflow was based on a custom AmpliSeq™ panel and designed for sequencing of human genes on an Ion PGM™ Sequencer. (researchgate.net)
  • The sequencer uses the bar code to keep track of which bases belong to which bacteria. (cdc.gov)
  • But, researchers at the University of California, San Francisco hope to improve the rate of infectious disease diagnosis -which would theoretically lead to better treatments and outcomes - using a metagenomic shotgun sequencing approach. (genomeweb.com)
  • The team uses a metagenomic shotgun sequencing approach of all the DNA or RNA present in a clinical sample. (genomeweb.com)
  • A cohort of 80 healthy subjects of Western European descent was screened to evaluate and validate the detection of exomic sequences of the coding genes with 25 base pair exon padding. (researchgate.net)
  • The objective of this document is to outline the available methods and tools for screening and sequencing patient specimens for the detection of VOC or VOI, with a focus on those that offer a rapid turn-around time so as to support rapid implementation of public health actions for COVID 19 control. (who.int)
  • The genetic structure and variability was described among 52 oil palm inter-population crosses after two selection cycles using simple sequence repeats markers (SRR). (academicjournals.org)
  • Allelic diversity of 22 Sampoerna Agro's oil palm Pisifera based on Microsatellite markers. (academicjournals.org)
  • All sequencing libraries were constructed based on PCR-free methods. (nature.com)
  • For sequences with a typical fraction of hydrophobic residues, we impact on how permissive with respect to sequence specificity find that the nonrandomness can be interpreted as anticorrela- the protein folding process is-- only sequences with nonran- tions. (lu.se)
  • permissive with respect to sequence specificity the protein folding process is, we have carried out the same analysis for a Section 1: Introduction toy model (7, 8), for which unbiased samples of folding and Hydrophobicity is widely believed to play a central role in the nonfolding sequences can be obtained. (lu.se)
  • No ribotyping information was available for the ST15 isolate, but it should be noted that RT010 isolates belong to the same sequence type. (cdc.gov)
  • HaloPlex HS is a high-sensitivity, amplicon-based targeted sequencing method that incorporates molecular barcodes in the DNA library. (agilent.com)
  • Molecular phylogeny of tribe Dipterocarpeae (family Dipterocarpaceae) based on sequence data of chloroplast and nuclear DNA. (uni-goettingen.de)
  • 2006. Molecular phylogeny of Dipterocarpaceae in Indonesia based on chloroplast DNA. (uni-goettingen.de)
  • However, when treatment was initiated based on molecular results, patients experienced better outcomes compared to patients who were treated prior to receiving molecular results, supporting the need for rapid molecular testing to inform better treatment decisions. (businesswire.com)
  • Scientists begin by using molecular scissors to cut the DNA, which is composed of millions of bases (A's, C's, T's and G's), into pieces that are small enough for the sequencing machine to read. (cdc.gov)
  • Efforts to mimic nature typically utilize amino acids and amino acid derivatives to form peptidomimetics having amide bonds.Presented here is a new class of synthetic sequence-defined polymers which do not use peptide bonds. (pnnl.gov)
  • from random sequences of amino acids is addressed. (lu.se)
  • Our analysis has been the amino acid sequences in proteins differ from what is carried out using two different methods, which differ substantially expected from random sequences in a statistically significant from what is used in ref. 3, although the starting point is similar. (lu.se)
  • PROT data base (6) of functional proteins, this method yields model containing only two amino acid types, hydrophobic and clear evidence for nonrandomness. (lu.se)
  • In many parts of the world, access to next-generation sequencing may be limited or unaffordable for cancer patients. (businesswire.com)
  • Next-generation sequencing (NGS) technology has been rapidly adopted in clinical practice, with the scope extended to early diagnosis, disease classification, and treatment planning. (jmir.org)
  • 1. Create an "array design" with all genes of interest (ideally this would be the largest set possible, e.g. known genes + predicted genes of all qualities, perhaps even predicted genes from the new sequence data). (lu.se)
  • Results were broadly congruent with a previous analysis based on morphological and flavonoid data. (bioone.org)
  • The length of the meta data sequence is not dependent on the amount of the meta information. (metacpan.org)
  • Character based meta data is read and set by method meta() and its variants. (metacpan.org)
  • The sequence data were obtained through direct sequencing of PCR products. (uni-goettingen.de)
  • The data were collected from capillary electrophoresis on the ABI Prism 3100® Genetic Analyzer with the Sequence Analysis Software v3.1 (Applied Biosystems). (uni-goettingen.de)
  • Comprising the 2010 M 7.1 Darfield earthquake and three subsequent M≥5.9 shocks (including the February 2011 Christchurch earthquake), this sequence provides a wealth of data (394 M≥3.95 shocks). (scec.org)
  • Approximately 1000 experimental data entries collected from the targeted sequencing pipeline CancerSCAN designed by Samsung Medical Center were used to validate implementation of the NGS-QR app using real-world data. (jmir.org)
  • In vitro selection data revealed sequence-specific binding activities of isolated BEN domains from all of these factors. (bvsalud.org)
  • In this way, the analysis is more sensitive to teins in the SWISS-PROT data base, convincingly show that long-range correlations along the sequence. (lu.se)
  • Of those, the team's metagenomic sequencing test was able to find a causative infectious agent in about 20 percent, Chiu said. (genomeweb.com)
  • Scientists use computer analysis tools to compare sequences from multiple bacteria and identify differences. (cdc.gov)
  • Distinct structural bases for sequence-specific DNA binding by mammalian BEN domain proteins. (bvsalud.org)
  • Together, these studies expand the DNA recognition activities of BEN factors and provide structural insights into sequence-specific DNA binding by mammalian BEN proteins . (bvsalud.org)
  • Prefix sub , like in subseq(), means that the method applies to sub region of the sequence range and takes start and end as arguments. (metacpan.org)
  • Prefix named_ in method names allows the used to attach multiple meta strings to one sequence by explicitly naming them. (metacpan.org)
  • In this paper, we present a method of rectilinear block packing using selected sequence-pair (SSP), a rectangle packing representation. (sciweavers.org)
  • So far, the fastest method based on a sequence-pair required Oðn2 þ '3 Þ time, where ' is the number of rectilinear blocks. (sciweavers.org)
  • Furthermore, matrix-profile-based path matching method was used for the first time in magnetic sequence-based localization. (tubitak.gov.tr)
  • A) Linear maps compare the open reading frames (ORF)1-8 of the pCD-METRO reference sequence (identical to the RT005 plasmid) with variant pCD-METRO sequences, including the ST15 isolate from the United States (top). (cdc.gov)
  • Development of a Sequence-Based Reference Physical Map of Pea (Pisum sativum L. (frontiersin.org)
  • May I know what is the complete statement of the result "the transgressions commute with the Steenrod operations on the base and fiber" and which reference can I refer to for it? (mathoverflow.net)
  • d_{2kp+1}(x^p)=P^ky$$ where $P^k$ denotes the Steenrod power operation (a textbook reference is McCleary: A User's guide to spectral sequences, Theorem 6.14). (mathoverflow.net)
  • BLAST algorithm against a set of reference sequences followed by notypes [6 ] with viruses in GI, GII, GVIII and GIX infecting humans. (cdc.gov)
  • It has developed an in-house bioinformatics pipeline, dubbed SURPI for sequence-based ultra-rapid pathogen identification, which helped decrease analysis time to between 10 minutes and 15 hours from several days. (genomeweb.com)
  • Multi-dimensional pooling of 295,680 BAC clones and sequencing the ends of restriction fragments of pooled DNA generated 1,814 million high quality reads, of which 825 million were deconvolutable to 1.11 million unique WGP sequence tags. (frontiersin.org)
  • If the quality of the library falls to a low level then the most common remedy is to perform quality trimming where reads are truncated based on their average quality. (babraham.ac.uk)
  • If your library has reads of varying length then you can find a warning or error is triggered from this module because of very low coverage for a given base range. (babraham.ac.uk)
  • Is it like say, for position 1 all the four bases are covering 25% of reads? (biostars.org)
  • Per base sequence content is describe at five minutes into the video. (biostars.org)
  • In this paper, we describe the development and evaluation of an forces that drive norovirus evolution [ 9 , 10 ] and most frequently occur alternative web-based tool, Human Calicivirus Typing (HuCaT) tool for at the junction of the RdRp (polymerase) and VP1 (capsid) encoding typing of human norovirus and sapovirus sequences. (cdc.gov)
  • A step-by-step guide for droplet-based single cell RNAseq experiments, practical considerations and technical notes. (rsc.org)
  • Finally, by combining the sequence recognition model with the quantitative changes in phosphorylation measured in the two drug perturbation experiments, we identified 29 reliable candidates of PKA targeting residues in living cells including 8 previously known substrates. (nih.gov)
  • In general sequencing chemistry degrades with increasing read length and for long runs you may find that the general quality of the run falls to a level where a warning or error is triggered. (babraham.ac.uk)
  • Indoor localization has become a popular topic with the development of location-based services (LBS) and indoor navigation systems. (tubitak.gov.tr)
  • sequencing-biomaterials-draft-2.png ​ ( 97.7 KB ) - added by Nicklas Nordborg 13 years ago . (lu.se)
  • Microsatellite-based high density linkage map in oil palm (Elaeis guineensis Jacq. (academicjournals.org)
  • 2009). During each cycle of selection, the dura (D) and tenera/pisifera (T/P) base populations are kept separate and outstanding dura and tenera palms are identified through the performance of D × T and D × P progenies. (academicjournals.org)
  • We then developed the FHIR-based web app and FHIR server to exchange quality information, along with statistical analysis tools implemented with the R Shiny server. (jmir.org)
  • Typing tool based typing tools. (cdc.gov)
  • Sequencing uncovered a "clear signature" of human herpesvirus 7, which Chiu said was unusual because most adults are immune to it. (genomeweb.com)
  • Using this system, the researchers showed that they could deliver genes as long as 36,000 DNA base pairs to several types of human cells, as well as to liver cells in mice. (sflorg.com)
  • The HuCaT tool was validated with a set of 1310 norovirus and 239 sapovirus sequences covering all known human norovirus and sapovirus genotypes. (cdc.gov)
  • The web-based HuCaT tool supports rapid and accurate genotyping of human noroviruses and sapoviruses. (cdc.gov)
  • Theoretically, it is "capable of generating novel sequences of words never observed previously by the model, but that represent plausible sequences based on natural human language," according to Tseng and his co-authors. (medscape.com)
  • Web-based to query sequences using a k-mer (DNA substring) based algorithm. (cdc.gov)
  • In the last years, despite the advances in this field, just few predictors, specific for LLPS, have been developed, trying to understand the relationship between protein sequence properties and the capability to drive LLPS. (wikipedia.org)
  • Here we will revise the state-of-the-art LLPS sequence-based predictors, briefly introducing them and explaining which are the individual protein characteristics that they identify in the context of LLPS. (wikipedia.org)
  • WGP technology is based on generation of short sequence tags from terminal ends of restriction fragments of individual BAC clones, followed by assembly of BAC clones into contigs based on shared regions containing identical sequence tags. (frontiersin.org)
  • Meta provides basic, pure perl implementation of sequences with meta information. (metacpan.org)
  • The quality of calls on most platforms will degrade as the run progresses, so it is common to see base calls falling into the orange area towards the end of a read. (babraham.ac.uk)
  • I read the definition like "the proportion of each base position in a file for which each of the four normal DNA bases has been called" in the manual. (biostars.org)
  • We then read in one read at a time and increment these vectors according to the sequences we see. (biostars.org)
  • Single-cell RNA-sequencing (scRNA-seq) has revolutionized biomedical research by enabling the in-depth analysis of cell-to-cell heterogeneity of tissues with unprecedented resolution. (rsc.org)
  • As the throughput gap widens over time, sequence analysis software is becoming a performance bottleneck, and the costs associated with building and maintaining the needed computing resources is burdensome for research laboratories. (umd.edu)
  • Can anybody help me to understand the meaning of Per base sequence content in FastQC analysis? (biostars.org)
  • formed a Fourier analysis based on the random walk represen- erties in terms of thermodynamical and kinetic behavior, tation. (lu.se)
  • wavelength corresponding to -helix structure, as one might have statistical analysis on the sequences that fold well indicates expected, but also at large wavelengths. (lu.se)
  • A warning will be issued if the lower quartile for any base is less than 10, or if the median for any base is less than 25. (babraham.ac.uk)
  • This module will raise a failure if the lower quartile for any base is less than 5 or if the median for any base is less than 20. (babraham.ac.uk)
  • Our experience has taught us that cancer cannot always be treated with a broad brush and often requires an individualized approach based on precise disease characteristics," said Nick Lagunowich, Pfizer Global President of Emerging Markets. (businesswire.com)
  • SummaRuNNer: A Recurrent Neural Network Based Sequence Model for Extractive Summarization of Documents Proceedings of the AAAI Conference on Artificial Intelligence, 31 (2017) 3075. (aaai.org)
  • In this study, we developed a deep learning model based on Gated Recurrent Unit (GRU) and sequence-to-sequence neural networks (GRUS), to improve the forecasting accuracy of significant wave heights for the Taiwan Strait, where ocean waves and winds own their unique characteristics. (cai.sk)
  • Agilent offers other hybridization-based target enrichment technology options, also, for finding specific regions-of-interest. (agilent.com)
  • Wave forecasting approaches based on deep learning techniques have recently made a great progress. (cai.sk)
  • LLPS often involves sequence regions that have unique functional characteristics, as well as the presence of prion-like and RNA-binding domains. (wikipedia.org)
  • Droplet-based single cell platform allows functional screening and sorting of desirable TCR T cells to accelerate development of adoptive T cell therapies. (rsc.org)
  • Agilent׷ HaloPlex / HaloPlex HS amplicon-based technology for target enrichment and amplification offers an NGS solution with speed, accuracy, and sensitivity. (agilent.com)
  • Results The amplicons covered approximately 97% of the target sequence. (researchgate.net)
  • However, the forecast skill of coulomb‐based seismicity models remains controversial, especially compared with empirical statistical models. (scec.org)
  • Recently, a new generation of coulomb‐based and coulomb/statistical hybrid models were developed that account better for uncertainties and secondary stress sources. (scec.org)
  • Purely physics‐based models have a performance comparable to the ETAS model, and the two coulomb/statistical hybrids perform better or similar to the corresponding statistical model. (scec.org)
  • The results demonstrate substantial improvements in the coulomb‐based models. (scec.org)
  • These results provide encouraging evidence for the predictive power of Coulomb‐based models. (scec.org)
  • Based on the results, there is ample variation among the inter-population progenies for maximum exploitation of heterosis and further gains in future breeding programme. (academicjournals.org)
  • Before committing to any action, check how many sequences were responsible for triggering an error by looking at the sequence length distribution module results. (babraham.ac.uk)
  • however the process requires a heavy commitment in faculty time andsometimes resources.This paper discusses preliminary results on introducing faculty on-going research toundergraduate students, in a form of lab sequence, focusing on student-centeredapproaches, such as active cooperative learning. (asee.org)
  • In addition, he said that the laboratory has been exploring the use of nanopore sequencing using Oxford Nanopore Technologies' MinIon. (genomeweb.com)