• Complete-linkage clustering is one of several methods of agglomerative hierarchical clustering. (wikipedia.org)
  • Single-linkage hierarchical clustering tree of enteroaggregative Shiga toxin-producing Escherichia coli O104:H4 from the Netherlands and reference sequences. (cdc.gov)
  • Interactive analysis includes dendrogram of clustered residues (hierarchical cluster tree), zoomable heatmap, circular diagram of inter-residue relationships, scatterplot of multi-dimensional scaling (MDS), and the mapping of residue clusters to a protein sequence or 3D structure. (cchmc.org)
  • The result of the clustering can be visualized as a dendrogram, which shows the sequence of cluster fusion and the distance at which each fusion took place. (wikipedia.org)
  • The dendrogram of the strains from the outbreak showed distinct clustering and correlation compared to the non-outbreak strains, confirming a common source of infection. (who.int)
  • Since 2016, STEC isolates have been subjected to whole-genome sequencing for high-resolution detection of clusters and outbreaks nationwide. (cdc.gov)
  • Responding to HIV clusters and outbreaks is 1 of the 4 pillars of the Ending the HIV Epidemic in the U.S. initiative and requires activities from the Diagnose, Treat, and Prevent pillars. (cdc.gov)
  • and that to properly respond to health security related emergencies with outbreaks of epidemic prone diseases, a revitalization of the public health system including IHR core capacities is essential. (who.int)
  • 5 The vehicles of transmission identified in a few reported localized outbreaks included luncheon pork 6 and an egg-based Malay pancake. (who.int)
  • The intense selection pressures during inbreeding favor the coinheritance of optimal sets of alleles among these genetically linked, functionally related genes, resulting in extensive domains of linkage disequilibrium (LD) among a set of 60 genetically diverse inbred strains. (jax.org)
  • During detailed retrospective analysis of the whole-genome sequencing data, we identified isolates from 2 clinical cases of STEC infection from 2019 and 2020 and characterized them as stx2a -encoding EAEC O104:H4 (isolates NL1981 and NL2076). (cdc.gov)
  • Cross-sectional retrospective analysis of linked health service data, January 2015 - February 2016. (mja.com.au)
  • A retrospective analysis of 16 713 surgical admissions was conducted over a 54 month period at a single academic medical center. (bmj.com)
  • B. melitensis isolates clustered in a very homogenous group and could not be resolved according to their assigned biovars. (biomedcentral.com)
  • The adapted developmental origins framework and the bio-ecological model of child development underpin this thesis, and the research relies on the applied quantitative approach for the empirical analyses. (edu.au)
  • This policy incoherence insists on a general lack of coordination between policies and actors concerned with food security, agriculture, environment, etc., and urban planning, and it is exacerbated by the general dearth of city-level data, analyses and empirical evidence to inform decision-making on urban and peri-urban food policy. (fao.org)
  • Each metro or micro area consists of one or more counties and includes the counties containing the core urban area, as well as any adjacent counties that have a high degree of social and economic integration (as measured by commuting to work) with the urban core. (ohio-state.edu)
  • The Respond pillar of the Ending the HIV Epidemic in the U.S. initiative, which consists of activities also known as cluster and outbreak detection and response, offers a framework to guide tailored implementation of proven HIV prevention strategies where transmission is occurring most rapidly. (cdc.gov)
  • Evidence from inbred strains of mice indicates that a quarter or more of the mammalian genome consists of chromosome regions containing clusters of functionally related genes. (jax.org)
  • By analyzing three distinct and technically replicated datasets with either ratio- or intensity-based models, we determined that, when applied to the same dataset, intensity-based analysis of dual-color gene expression experiments yields 1) more reproducible results, and 2) is more sensitive in the detection of differentially expressed genes. (biomedcentral.com)
  • Analysis of variance (ANOVA) is a widely used tool to analyze and rank genes in both one- and dual-color comparative gene expression experiments [ 5 ]. (biomedcentral.com)
  • We identify a set of 2,882 core genes clusters based on 73 publicly available Salmonella enterica genomes and evaluate their value as typing targets, comparing whole genome typing and traditional methods such as 16S and MLST. (biomedcentral.com)
  • Identification of genes with different degrees of variation is important especially in trend analysis. (biomedcentral.com)
  • Today, the most widely used typing methods for bacterial genomes include multilocus sequence typing (MLST), pulsed field gel electrophoresis (PFGE), sequencing of 16S rRNA genes, and multilocus variable-number of tandem-repeat analysis (MLVA). (biomedcentral.com)
  • Background: Expression analysis of estrogen response genes (ERGs) may help to predict the effectiveness of endocrine therapies in breast cancer patients. (iiarjournals.org)
  • were able to cluster all genes into 15,389 groups called "gene families. (blogspot.com)
  • The sequence analysis of the 32-35,000 predicted genes indicates the there may be as many as 1,000 kinase or kinase-like genes. (ddw-online.com)
  • Analysis of gene expression can include measuring expression levels of a small set of genes to whole genome expression monitoring. (ddw-online.com)
  • CoeViz is a web-based tool for analysis and visualization of coevolution of protein residues. (cchmc.org)
  • Interactive analysis and visualization include: cluster tree, zoomable heat map, relationship circular diagrams, and MDS scatterplots. (cchmc.org)
  • Additionally, such a visualization can identify "clusters of similarity" indicating the need for separately trained models for each cluster. (libraries.io)
  • Intensity-based analysis of dual-color datasets results in more reproducible results and increased sensitivity in the detection of differential gene expression than the analysis of the same dataset with ratio-based analysis. (biomedcentral.com)
  • The author argues for the representation of problems, and the organised resources brought to bear on them, by interlinked networks, thus permitting computer-assisted, non- quantitative analysis and display of such structures to aid detection and comprehension of their strengths and weaknesses of policy-making significance. (laetusinpraesens.org)
  • HIV Cluster and Outbreak Detection and Response: The Science and Experience. (cdc.gov)
  • Efforts to address important gaps in service delivery revealed by cluster and outbreak detection and response can strengthen prevention efforts broadly through multidisciplinary, multisector collaboration. (cdc.gov)
  • Genetic analysis includes procedures for genotyping, SNP (single nucleotide polymorphism) detection, strain identification and various other procedures. (ddw-online.com)
  • Epidemiological data, including vaccination status in dogs, were also collected. (bvsalud.org)
  • Ratio-based analysis is the current standard for the analysis of dual-color microarray data. (biomedcentral.com)
  • We have created a visual analysis system that is designed for immersive visualisation and exploration of human motion data. (springer.com)
  • In fact, the incidental motion data tracked during a VR session is of strong interest for a multitude of VR-based motion analysis tasks, which are relevant for various private, commercial, but also medical and scientific use cases. (springer.com)
  • This co-location of data acquisition and analysis allows for several applications, ranging from accelerated improvement cycles in VR training to real-time collaborative remote analysis for VR-based task or game design. (springer.com)
  • A typical approach to provide a still overview of motion data for analysis is to visualise the space-time trajectories of tracked reference points. (springer.com)
  • However, human motion data tracked in VR sessions comprises multiple semantically linked trajectories (head and hands) per person, which is particularly challenging for comparative side-by-side analysis of multiple user sessions. (springer.com)
  • At the same time, an immersive setting for the analysis process requires suitable user interaction techniques that support exploration, detail inspection and comparison tasks with a suitable reduction of the data complexity and visual clutter. (springer.com)
  • In our work, we create an immersive system for the analysis of VR motion data that allows for a seamless integration into existing VR engines and thus an immediate switch between simulation or gaming sessions, where user motion is recorded, and immersive visual analysis sessions, where the motion data is evaluated. (springer.com)
  • The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. (plos.org)
  • The recommendation system is a proof of concept based on active learning principles and includes, for a given protein, criteria including phylogenetic distribution of its protein family, biological and clinical phenotypes associated with it, the availability of protein structure data, and its sequence distance from experimentally determined proteins or from the other proteins in its family. (plos.org)
  • In the first step, we demonstrate that four commonly used machine learning methods, Linear SVM, Linear Discriminant Analysis, Naïve Bayes, and Neural Network, all combine heterogeneous data to produce reliable and high-coverage FLNs, in which the linkage weight more accurately estimates functional coupling of linked proteins than use individual data sources alone. (biomedcentral.com)
  • Data were analyzed by cluster analysis. (iiarjournals.org)
  • Surveillance data, including HIV-1 polymerase sequences, were analyzed to estimate the transmission rate and timing of infections using molecular clock phylogenetic analysis. (cdc.gov)
  • The spectrum of the study was enhanced by establishing data linkages between the Health CheckPoint survey, the Pharmaceutical Benefits Scheme and the Medicare Benefits Schedule data with the LSAC databases. (edu.au)
  • Paper 1 utilised a cross-section analysis of infants' and adolescents' health status through the lens of the foetal origins hypothesis and analyses data from Wave 1 and Wave 7 of the LSAC surveys. (edu.au)
  • Paper 3 deployed a panel data survival analysis method to estimate the prevalence of long-term medical conditions or disabilities in Australian children. (edu.au)
  • She also used the geocode the address and assign a PRIZM cluster to the data to find out where are high concentrations of 55-74 response. (cdc.gov)
  • Typically when data are presented, the fluor- escent intensity from the tissue is pseudo-colored red and the intensity from the reference green, and the logarithmic ratio of background corrected red and green intensities for each gene (spot) is subject to analysis (see Fig. 1 ). (lu.se)
  • These data have been combined with previously published LNET data to perform integrative analysis using multi-omics factor analysis (MOFA), resulting in a molecular map of lung neuroendocrine neoplasms for exploration. (who.int)
  • The following algorithm is an agglomerative scheme that erases rows and columns in a proximity matrix as old clusters are merged into new ones. (wikipedia.org)
  • In May 1976, D. Defays proposed an optimally efficient algorithm of only complexity O ( n 2 ) {\displaystyle O(n^{2})} known as CLINK (published 1977) inspired by the similar algorithm SLINK for single-linkage clustering. (wikipedia.org)
  • STRUCTURE is an algorithm designed to infer population structure (cluster individuals into ancestry groups) within a species (Pritchard, Stephens, and Donnelly 2000. (thisviewoflife.com)
  • This article reviews the experience gained through 30 HIV cluster and outbreak responses in North America during 2000-2020 to describe approaches for implementing these core response strategies. (cdc.gov)
  • Selective breeding schemes are widely recognised as efficient means to improve aquaculture production. (europa.eu)
  • Each metric, in turn, is computed using four weighting schemes: weighted by sequence dissimilarity or sequence gapping in the alignment (Eqs. (cchmc.org)
  • The definition of 'shortest distance' is what differentiates between the different agglomerative clustering methods. (wikipedia.org)
  • Then, massive CMFD methods are mainly divided into two types to retrospect the development process of CMFD technologies, including block-based and keypoint-based. (jips-k.org)
  • This is a mixed methods study which aims to work with PPI and stakeholders throughout to develop recommendations for future innovations in rural CFR provision by investigating current activity, costs of provision, and views of patients, public, CFR schemes and rural care providers. (cahru.org.uk)
  • 2005) showed that the results of STRUCTURE style analyses are dependent upon whether allele frequencies are correlated or uncorrelated across populations, the number of loci used, the number of clusters specified, and the sample size. (thisviewoflife.com)
  • They were detected based on the number of software supporting them with constraints on depth, minimum allele frequency, flanking sequences and GC%, and further annotated and positioned on the stickleback linkage map with ENSEMBL. (europa.eu)
  • The analysis program pruned away SNPs based on minor allele frequency and strains based on sister-strain similarity. (jax.org)
  • Similarly, multiple-SNPs analysis revealed joint effects of rs2134655, rs172677 and rs1079597, with an adjustment for habitual smoking. (nature.com)
  • The naming scheme is the original one for SNPs (e.g., 19-058179075-M). (jax.org)
  • Fuelled by nine collaborative clusters of opportunity, we can inject billions into the WA economy and create more than 75,000 jobs of the future by 2029. (deloitte.com)
  • To compare the outcomes and costs of clustered domestic and standard Australian models of residential aged care. (mja.com.au)
  • The implications Smaller scale, clustered domestic models of care may better meet the preferences of residents and their families, and also improve health and quality of life outcomes for older people, at similar or lower costs. (mja.com.au)
  • This thesis examines the associations between maternal health and different childhood health outcomes, including wheezing, asthma, eczema and long-term medical conditions or disabilities. (edu.au)
  • Here, we apply a bibliometric analysis to review research on green finance and carbon emission reduction based on the literature from 2010 to 2021 in the Web of Science core database. (frontiersin.org)
  • The Ministry of Food Processing Industries has notified the Revised Guidelines of a Mega Food Park Scheme (MFPS vide a notification dated 3rd February 2021. (indiafilings.com)
  • The last date for submission of application for Mega Food Park Scheme is 03.03.2021 Upto 5:00 PM. (indiafilings.com)
  • According to Nicholas Wade, "Humans cluster into five continental groups or races, and within each race there are further subclusters. (thisviewoflife.com)
  • Much of his assertion that biological races exist within humans is contingent upon both his uncritical acceptance and misrepresentation of the significance of STRUCTURE type analyses of human genetic diversity. (thisviewoflife.com)
  • Given the strong conservation of gene order among mammals, the domains and networks we find in mice probably characterize all mammals, including humans. (jax.org)
  • Furthermore, we compared performance of both ratio- and intensity-based analyses in terms of reproducibility and sensitivity for differential gene expression. (biomedcentral.com)
  • Furthermore, intensive gene flow was discovered among the seven Shandong indigenous breeds, particularly Wulian, Licha, and Heigai, as indicated by the large cluster formed in the principal component analysis scatterplot and small population differentiation (average of 0.1253) among them. (animbiosci.org)
  • This system has already been used successfully in several studies for gene expression and mutation analysis ( 8 , 9 ). (iiarjournals.org)
  • Gene expression analysis may uncover or facilitate answers to these questions as well as assist research and development and health care in several other ways. (ddw-online.com)
  • Two of the most common uses of the DNA microarrays are genetic analysis and the analysis of gene expression. (ddw-online.com)
  • This report will focus in using DNA microarrays for the analysis of gene expression or expression profiling, and how DNA chips are used for drug discovery and development. (ddw-online.com)
  • In what follows we limit ourselves to the analysis of gene expression measurements obtained using microarrays with small spots of DNA fixed to glass slides. (lu.se)
  • Spatiotemporal analysis of deforestation patterns and drivers reveals emergent threats to tropical forest landscapes. (helsinki.fi)
  • Based on analyses of keyword frequency and centrality, deforestation, carbon markets, and financial development were the most significant research topics. (frontiersin.org)
  • Conducting such analyses requires an urban-rural classification scheme. (cdc.gov)
  • This report describes a six-level urban-rural classification scheme developed by the National Center for Health Statistics for the 3,141 U.S. counties and county-equivalents. (cdc.gov)
  • This classification scheme, unlike others that have been developed since 2003, separates large metropolitan counties into two categories: large metro central and large metro fringe. (cdc.gov)
  • As more is elucidated about the molecular genetics that contribute to these phenotypes, this classification scheme may change. (medscape.com)
  • Examples include the performance analysis and optimisation in task-oriented VR scenarios, but also the evaluation and assessment in virtual training sessions. (springer.com)
  • A biotyping assay useful for Brucella identification and species differentiation must consequently be able to identify the rising number of upcoming new species as well as single atypical strains which do not fit within the pre-existing scheme [ 10 , 11 ]. (biomedcentral.com)
  • The clustering of spatially associated species unravels patterns in tropical tree species distributions. (helsinki.fi)
  • The result is a weighted functional linkage network (FLN) in which linked neighbors share at least one function with high probability. (biomedcentral.com)
  • If the average number of links per protein is sufficiently large, the result will be a network of interactions, a so-called functional linkage network (FLN). (biomedcentral.com)
  • Stuart, T. & Satija, R. Integrative single-cell analysis. (nature.com)
  • We therefore raised the question whether it is feasible to use an intensity-based analysis rather than ratio-based analysis of dual-color microarray datasets. (biomedcentral.com)
  • Moreover, the FD10 microarray system automates and integrates pumping of the sample solution for hybridization, solution-driven incubation, and image acquisition and analysis functions ( 8 ). (iiarjournals.org)
  • For the microarray analysis, we surgically obtained 27 breast cancer tissue samples from patients undergoing treatment at the Saitama Cancer Center Hospital (Saitama, Japan) from 25/8/2003 - 6/11/2003. (iiarjournals.org)
  • METHOD: A multicentric cross-sectional study included consenting gold-mining adult workers in 2019. (bvsalud.org)
  • RESULTS: In 2019, 380 individuals were included in the study, along with 407 samples from the 2015 biological collection. (bvsalud.org)
  • This thesis also identifies vulnerable clusters based on childhood wheezing, asthma or eczema morbidities and on the lifestyles and health behaviours of adolescents that contribute to obesity. (edu.au)
  • Through an application of the same technique (survival analysis), Paper 4 reveals that low birth weight, receiving emergency hospital services just after birth, being male and being obese during childhood up to the age of 15 years are associated with an increased risk of having a long-term medical condition or disability. (edu.au)
  • The benign partial epilepsies include benign partial epilepsy of childhood with centrotemporal spikes, benign occipital epilepsy, and benign epilepsy with affective symptoms. (medscape.com)
  • The main outputs are the parental allocations with their probability estimation, the crossing scheme, the observed and expected heterozygosities and the PIC and exclusion probabilities. (europa.eu)
  • Another download arm� cortex� m4 cookbook exists the K of the CG threshold, in which the CG years do caught including the syndrome leading methodology with large electronic dynamics. (enchantlegacy.org)
  • Other schemes successfully target corporate, government, and educational databases with vast identity holdings, and succeed in stealing hundreds of thousands of identities in a single blow. (microsoft.com)
  • Diarrhoeal diseases are the most common illnesses caused by contaminated food, with 550 million people falling ill each year, including 220 million children under the age of 5 years ( WHO, 2022 ). (elifesciences.org)
  • Results: All 27 specimens were classified clearly into one of two clusters based on whether the ERGs were up or down regulated. (iiarjournals.org)
  • In this paper we focus on the results of this analysis as they pertain to a select number of disadvantaged districts and cities in our study countries. (biomedcentral.com)
  • The analysis of these results, in terms of a statistical-mechanical model that incorporates polymer flexibility as well as the excluded volume of the protein, shows that the dramatic enhancement of bovine pancreatic trypsin inhibitor self-association can be quantitatively rationalized in terms of hard repulsive interactions. (lu.se)
  • In addition, a scoring scheme to estimate the precisions of individual predictions is also provided. (biomedcentral.com)
  • In a large molecular cluster containing 56 of 60 (93%) available sequences, 93% of inferred transmissions occurred after January 1, 2018. (cdc.gov)
  • Multi-omics integration analysis of 319 carcinoids resulted in a molecular map forming a distinctive tetrahedron. (who.int)
  • F.N. Baker and A. Porollo (2016) CoeViz: a web-based tool for coevolution analysis of protein residues . (cchmc.org)
  • Longitudinal analysis and validation with publicly accessible international samples indicated that predictions were robust to prospective external datasets. (elifesciences.org)
  • Furthermore, a power analysis revealed that for direct two-group comparisons above a certain sample size, ratio-based models have higher power, although the difference with intensity-based models is very small. (biomedcentral.com)
  • Small, clustered domestic models of care are reported to perform well on standard quality of care indicators, such as numbers of re-hospitalisations, catheter use, and pressure ulcers. (mja.com.au)
  • Clusters are a result of either an existing natural advantage, being at the right place at the right time in history or a legacy of the technology developments of the recent resources boom. (deloitte.com)
  • iii This thesis implemented an unsupervised machine learning method known as latent class clustering to identify the vulnerable clusters of children who experience wheezing, asthma or eczema and vulnerable children with problematic lifestyles and health behaviours who are prone to be obese and have a lower quality of life (Paper 5 and 6, respectively). (edu.au)
  • The Scheme aims to facilitate the establishment of a strong food processing industry backed by an efficient supply chain, which would include collection centres, primary processing centres and cold chain infrastructure. (indiafilings.com)
  • For dual-color arrays specifically, an array effect is included in the model to determine the technical noise introduced by any between-array differences. (biomedcentral.com)
  • The new A clustered, domestic model of residential aged care was associated with fewer hospitalisations and emergency department presentations and higher quality of life for residents, without increasing whole of system costs. (mja.com.au)
  • The primary objective of the Mega Food Park Scheme is to provide modern infrastructure facilities for the food processing along the value chain from the farm to the market. (indiafilings.com)
  • The analysis and identification of strategies to scale-up priority MNCH interventions is conducted by in-country planners and policymakers with facilitation from local and international research partners. (biomedcentral.com)
  • 17 aged care facilities in four Australian states providing clustered (four) or standard Australian (13) models of residential aged care. (mja.com.au)
  • Clustered domestic models of residential care are associated with better quality of life and fewer hospitalisations for residents, without increasing whole of system costs. (mja.com.au)
  • Models of care have been proposed that include smaller living units designed to look and feel like homes, with staffing models and physical design that support greater resident choice in routines, as well as flexibility of activities and outdoor access. (mja.com.au)
  • The publication ends with a researched account and analysis of the implementation of the three locally-based models in four village locations in Khyber Pakhtunkhwa Province, Pakistan. (hope87.org)
  • HIV testing, HIV pre-exposure prophylaxis, and syringe services were rapidly expanded, leading to improved linkage to HIV care and viral suppression. (cdc.gov)
  • As of 18 October 2015, a total of 28 476 EVD cases and 11 298 deaths were reported, including 1049 cases and 535 deaths among health care workers from six West African countries, namely: Guinea, Liberia, Mali, Nigeria, Senegal and Sierra Leone. (who.int)
  • They the representatives and coordinators of HCP can also ensure that health care and Capacity building activities are being other social services are used in their conducted to provide relevant training on clusters. (who.int)
  • The Scheme will provide a capital grant at the rate of 50 per cent of the eligible project cost in general areas and at the rate of 75 per cent of the eligible project cost in difficult and hilly areas i.e. (indiafilings.com)
  • The project operated a scheme enabling the participants to obtain training material on credit for thirty days. (nzdl.org)
  • Discriminant analysis was used to verify the classification of counties into these two categories. (cdc.gov)
  • The 2000 standards reflect extensive modification of the rules governing metropolitan status, including simplification of the classification criteria and the addition of a new category for some of the nonmetropolitan counties. (cdc.gov)
  • A high-density single nucleotide polymorphism (HD-SNP) chip-based comparative analysis of genetic characteristics was performed for seven Shandong indigenous pig breeds in the context of five Western commercial breeds. (animbiosci.org)
  • Each cluster exists in response to global need, but must play to WA's comparative strengths. (deloitte.com)
  • They also include investment in rural and urban infrastructure, the development of territorial markets and short supply chains. (fao.org)
  • The various types of epilepsy differ in many aspects, including (1) age of onset, (2) semiology, (3) EEG findings, and (4) outcome. (medscape.com)
  • Abt Associates-a global company that conducts research, consulting, and technical services in health, environmental and social policy, technology, and international development-commits to pursuing opportunities within new and existing global projects to conduct antibiotic resistance mapping, landscaping, and trend analysis. (cdc.gov)
  • WHO has progressively played a key leadership role in coordinating the epidemic response, mobilizing international response, and developing and supporting the implementation of relevant health response strategies required to control the EVD epidemic.3 More than 3800 experts, including 1250 from the WHO African Region, have been deployed. (who.int)
  • According to WHO, skilled birth attendants are health professionals who have basic midwifery and obstetric skills including nurses, midwives, and physicians (WHO, 2004). (hindawi.com)
  • The importance of geography as both an equity marker [ 8 ] and the key parameter used by governments for planning, budgeting and delivery of health services justified the choice of disadvantaged locations as the unit of analysis. (biomedcentral.com)
  • cores that include motions, microscopic development, or non-ideal will determine doctorate. (enchantlegacy.org)
  • The ancestral groups are not specified in advance, and the population membership of individuals is removed prior to analysis. (thisviewoflife.com)
  • At the beginning of the process, each element is in a cluster of its own. (wikipedia.org)
  • n − 1) and L(k) is the level of the kth clustering. (wikipedia.org)
  • Set the level of this clustering to L ( m ) = d [ ( r ) , ( s ) ] {\displaystyle L(m)=d[(r),(s)]} Update the proximity matrix, D {\displaystyle D} , by deleting the rows and columns corresponding to clusters ( r ) {\displaystyle (r)} and ( s ) {\displaystyle (s)} and adding a row and column corresponding to the newly formed cluster. (wikipedia.org)
  • Numerous classification schemes have been devised to categorize communities by urbanization level (2, 3, 5-9). (cdc.gov)