PhylogenyEvolution, MolecularLightGene Transfer, HorizontalSpecies SpecificityGene DuplicationModels, GeneticGenomicsSequence Analysis, DNAComputational BiologyAlgorithmsBiological EvolutionMolecular Sequence DataLikelihood FunctionsSequence AlignmentDNA, MitochondrialFossilsBayes TheoremDNA, Ribosomal SpacerDNA, RibosomalGenetic SpeciationBase SequenceRNA, Ribosomal, 18SGenetic VariationDNA, ChloroplastRNA, Ribosomal, 16SPhylogeographyGenome, MitochondrialRNA, Ribosomal, 28SClassificationMyosin Light ChainsAngiospermsMammalsAmino Acid SequenceGenes, MitochondrialGeographyPlastidsDNA, PlantInvertebratesGymnospermsEukaryotaMultigene FamilyPlantsArthropodsDarknessBiodiversityRNA, RibosomalPrimatesGenomeBirdsVertebratesSymbiosisGenome, BacterialSequence Homology, Nucleic AcidGenes, rRNAExtinction, BiologicalLight Signal TransductionCluster AnalysisAscomycotaEcosystemDNA, BacterialBacteriaAnthocerotophytaArchaeaFishesStrepsirhiniCuring Lights, DentalPlatyhelminthsLizardsSoftwareChlorophytaRhodophyta