• genes
  • In an effort to determine genes that are expressed in mycelial cultures of Neurospora crassa over the course of the circadian day, we have sequenced 13,000 cDNA clones from two time-of-day-specific libraries (morning and evening library) generating ∼20,000 sequences. (genetics.org)
  • Using these sequences, the representation of genes among the morning and evening sequences, respectively, in most cases does not reflect their expression patterns over the course of the day. (genetics.org)
  • On the basis of these data we predict that a significant proportion of the expressed Neurospora genes may be regulated by the circadian clock. (genetics.org)
  • Under heat stress, we find that 63 TUGs are differentially expressed (d.e.) at 25°C compared with lower, no-stress condition temperatures (4°C and 17°C). Approximately one-third of d.e. eelgrass genes were characteristic for the stress response of the terrestrial plant model Arabidopsis thaliana. (mpg.de)
  • Today, new technologies are allowing us to sequence individual genomes for a few thousand dollars and in a matter of days, opening up unprecedented opportunities to discover the associations between the genes encoded in the genome and their manifestations in the physical phenotypes we observe, including their associations with disease. (dana-farber.org)
  • Highly expressed genes often exhibit a high degree of codon bias whereas lowly expressed genes often contain many alternative synonymous codons [ 5 ]. (pubmedcentralcanada.ca)
  • Some laboratories have utilized transcriptomics to explore the response of chickpea to abiotic and biotic stresses such as drought, salinity, heat, cold, Fusarium oxysporum and Ascochyta rabiei differentially expressed genes and also established crosstalk between biotic and abiotic stress responses. (intechopen.com)
  • The sequence of these genes encoded all of the information required to specify the reproduction, development, and adult function of an individual organism. (nybg.org)
  • The parental isolate and progeny isolates were characterized by testing them on 25 wheat lines with different Yr genes for resistance and 10 simple sequence repeat (SSR) markers. (frontiersin.org)
  • In silico comparison of cDNA libraries identified aphid genes with tissue-specific expression patterns, and gene expression that is induced by feeding on Nicotiana benthamiana . (pubmedcentralcanada.ca)
  • These include previously unknown sequence data, a collection of expressed genes, molecular markers, and a DNA microarray that can be used to study aphid gene expression. (pubmedcentralcanada.ca)
  • Li J, Sun X, Yu G, Jia C, Liu J, Pan H. Generation and Analysis of Expressed Sequence Tags (ESTs) from Halophyte Atriplex canescens to Explore Salt-Responsive Related Genes. (mdpi.com)
  • Prediction of the coding sequences of unidentified human genes. (wikipedia.org)
  • Together they represent a more or less complete set of expressed genes from these organisms. (wikipedia.org)
  • Sequence analysis, immunological distance, and examination of evolutionarily suppressed conformational states showed that the TnI genes have evolved in close linkage with the genes encoding troponin T (TnT), another subunit of the troponin complex. (wikipedia.org)
  • Issues with microarrays include cross-hybridization artifacts, poor quantification of lowly and highly expressed genes, and needing to know the sequence a priori. (wikipedia.org)
  • characterization
  • As converting RNA into cDNA using reverse transcriptase has been shown to introduce biases and artifacts that may interfere with both the proper characterization and quantification of transcripts, single molecule Direct RNA Sequencing (DRSTM) technology was under development by Helicos (now bankrupt). (wikipedia.org)
  • protein
  • We compare the photoresponses of wild-type cones with those of cones that do not express the EML1 protein. (jneurosci.org)
  • Prolactin induced protein (called GCDFP-15 in this context) in breast cyst fluid or breast tissue serves as marker of both benign and malignant apocrine metaplasia as the protein is not normally expressed in breast tissue. (wikipedia.org)
  • human
  • After receiving a fellowship from the National Center for Human Genome Research, he worked with Glen Evans on the physical mapping of human chromosome 11, and later with Richard Myers and David Cox on large-scale DNA sequencing of chromosomes 21 and 4. (dana-farber.org)
  • While studying as a PhD student at Peking University, in 1999 Wang founded the bioinformatics group at BGI, which lead China's contribution to sequencing 1% of the Human Genome Project. (wikipedia.org)
  • analyses
  • The Web-accessible database was also linked to an informatics suite that allows on-line clustering and K-means analyses as well as Boolean and sequence-based searches of the data. (aspetjournals.org)
  • silico
  • In silico methods for detecting NATs suffer from several shortcomings depending on the source of sequence information. (wikipedia.org)
  • known
  • For ∼50% of the sequences (710 of 1431), significant matches to sequences in the National Center for Biotechnology Information database (of known or unknown function) were detected. (genetics.org)
  • several
  • We compare several expressed sequence tag (EST) in the ecologically important seagrass Zostera marina (eelgrass) to elucidate the molecular genetic basis of adaptation to environmental extremes. (mpg.de)
  • We report the construction of the first fingerprinting array for Salvia species enriched with polymorphic and divergent DNA sequences and demonstrate the potential of this array for fingerprinting several economically important members of this genus. (springer.com)
  • specific
  • In order to generate the Salvia subtracted diversity array (SDA) a suppression subtractive hybridization (SSH) was performed between a pool of Salvia species and a pool of angiosperms and non-angiosperms to selectively isolate Salvia -specific sequences. (springer.com)
  • Genotype is the term applied to specific changes in DNA sequence found in a mutant, while phenotype refers to all biological consequences from the presence of the mutation in question. (nybg.org)