Gene Regulatory NetworksAlgorithmsModels, GeneticGene Expression ProfilingComputational BiologySystems BiologyComputer SimulationTranscription FactorsGene Expression Regulation, DevelopmentalModels, BiologicalOligonucleotide Array Sequence AnalysisBayes TheoremSea UrchinsGene Expression RegulationStrongylocentrotus purpuratusSignal TransductionNeural Networks (Computer)Databases, GeneticSoftwareModels, StatisticalEchinodermataEmbryo, NonmammalianGenomicsMetabolic Networks and PathwaysStochastic ProcessesEvolution, MolecularMicroRNAsTranscriptomeCell Physiological PhenomenaNucleotide MotifsEndodermTranscription, GeneticCluster AnalysisFeedback, PhysiologicalGene Expression Regulation, BacterialHomeodomain ProteinsGene Expression Regulation, PlantRegulatory Elements, TranscriptionalSaccharomyces cerevisiaeProtein Interaction MappingProteomeReproducibility of ResultsArabidopsisBody PatterningMesodermCell DifferentiationGenes, RegulatorGenomeImmune System PhenomenaMarkov ChainsEscherichia coliBinding SitesChromatin ImmunoprecipitationEctodermBiological EvolutionGastrulationCell LineagePhenotypeMolecular Sequence DataPromoter Regions, GeneticGene Expression Regulation, FungalNonlinear DynamicsArtificial IntelligenceCiona intestinalisCaulobacteraceaeBiostatisticsPosition-Specific Scoring MatricesVertebratesQuantitative Trait LociSkeletonBlastulaStarfishEmbryonic Stem CellsRegulonBase SequenceMutationModels, TheoreticalData Interpretation, StatisticalMultigene FamilyWork SimplificationLytechinusGenes, PlantEpistasis, GeneticProtein Interaction MapsCaenorhabditis elegansDrosophilaNeural CrestArabidopsis ProteinsPhylogenyUser-Computer InterfaceEmbryonic DevelopmentConserved SequenceRNA, MessengerData MiningInternetDrosophila melanogasterDrosophila ProteinsIn Situ HybridizationSOXB1 Transcription FactorsUncertainty