PhylogenyEvolution, MolecularSequence Analysis, DNABiological EvolutionMolecular Sequence DataLikelihood FunctionsConflict of InterestSpecies SpecificitySequence AlignmentBayes TheoremDNA, MitochondrialFossilsDNA, Ribosomal SpacerDNA, RibosomalModels, GeneticGenetic SpeciationGenetic VariationRNA, Ribosomal, 18SBase SequenceRNA, Ribosomal, 16SDNA, ChloroplastPhylogeographyGenome, MitochondrialRNA, Ribosomal, 28SClassificationGene Transfer, HorizontalMammalsAngiospermsAlgorithmsGenes, MitochondrialGeographyDNA, PlantAmino Acid SequenceInvertebratesGymnospermsComputational BiologyGenomeMultigene FamilyPrimatesBiodiversityPlastidsArthropodsSoftwareRNA, RibosomalGenomicsCluster AnalysisGenome, BacterialGene DuplicationEukaryotaBirdsVertebratesPlantsGenes, rRNAExtinction, BiologicalSequence Homology, Nucleic AcidSymbiosisBacteriaEcosystemAscomycotaDNA, BacterialAnthocerotophytaArchaeaStrepsirhiniDNA, FungalComputer SimulationPeptide Elongation Factor 1Sequence HomologyGene OrderPlatyhelminthsFishesDatabases, GeneticPolymerase Chain ReactionFungiInsectsLizardsCetaceaHominidaeDNA, IntergenicPaleontologyGenes, ArchaealGenes, ChloroplastRhodophytaCiliophoraGastropodaMadagascarRNA, Ribosomal, 5.8SChlorophytaSequence Homology, Amino AcidDNA PrimersConserved SequenceProkaryotic CellsKinetoplastidaGenome, PlantModels, StatisticalBasidiomycotaHylobatesHaplotypesGeologyGenetic MarkersInsectivora