Gene Expression ProfilingGene Regulatory NetworksGene Expression RegulationComputational BiologyOligonucleotide Array Sequence AnalysisAlgorithmsGene Expression Regulation, DevelopmentalTranscription FactorsGene Expression Regulation, PlantMicroRNAsModels, GeneticTranscription, GeneticSoftwareHigh-Throughput Screening AssaysPromoter Regions, GeneticRNA, MessengerBase SequenceGene ExpressionMolecular Sequence DataSystems BiologyGenomeModels, BiologicalDatabases, GeneticGenomicsComputer SimulationRNA, UntranslatedTranscriptomeSignal TransductionBinding SitesEvolution, MolecularCluster AnalysisGene Expression Regulation, FungalSequence Analysis, DNAInternetSea UrchinsUser-Computer InterfaceGene Expression Regulation, NeoplasticSequence Analysis, RNAGene Expression Regulation, BacterialReproducibility of ResultsBayes TheoremChromatinMetabolic Networks and PathwaysProteomeHigh-Throughput Nucleotide SequencingStrongylocentrotus purpuratusReverse Transcriptase Polymerase Chain ReactionArabidopsisNeural Networks (Computer)Embryo, NonmammalianGene Expression Regulation, ArchaealProtein Interaction MappingModels, StatisticalNucleic Acid ConformationEchinodermataNucleotide MotifsStochastic ProcessesCell Physiological PhenomenaAmino Acid SequenceConserved SequenceProteomicsSequence AlignmentCell LineDNA-Binding ProteinsHomeodomain ProteinsPantothenic AcidPhenotypeSaccharomyces cerevisiaeMicroarray AnalysisProteinsCell DifferentiationDatabase Management SystemsInformation Storage and RetrievalChromatin ImmunoprecipitationEndodermPhylogenyArtificial IntelligenceComputer GraphicsFeedback, PhysiologicalDatabases, ProteinRegulatory Elements, TranscriptionalEscherichia coliData MiningCell Line, TumorDatabases, FactualProtein BindingMarkov ChainsSystems IntegrationGenes, PlantCells, CulturedTime FactorsProgramming LanguagesGlial Cell Line-Derived Neurotrophic FactorGenes, RegulatorBody PatterningDrug Evaluation, PreclinicalSequence Analysis, ProteinComputing MethodologiesBacterial ProteinsDown-Regulation