Metabolic Networks and PathwaysGene Expression ProfilingGene ExpressionMetabolismModels, BiologicalSystems BiologyGene Expression RegulationGene Regulatory NetworksComputational BiologyComputer SimulationAlgorithmsMetabolomeEnzymesCell Physiological PhenomenaOligonucleotide Array Sequence AnalysisNeural Networks (Computer)BiomassMetabolomicsGenome, BacterialSoftwareMetabolic EngineeringEscherichia coliSignal TransductionRNA, MessengerAutotrophic ProcessesModels, GeneticProteomeGene Expression Regulation, BacterialCluster AnalysisTranscription, GeneticProtein Interaction MappingCitric Acid CycleGenomicsGene Expression Regulation, DevelopmentalTranscription FactorsCarbonComputer GraphicsDatabases, GeneticGene Expression Regulation, PlantSaccharomyces cerevisiaePhenotypeGlycolysisEscherichia coli K12Biochemical ProcessesGene Expression Regulation, FungalSubstrate CyclingUser-Computer InterfacePromoter Regions, GeneticBase SequenceMolecular Sequence DataGene Expression Regulation, NeoplasticGenomeReverse Transcriptase Polymerase Chain ReactionPentose Phosphate PathwayEvolution, MolecularEnergy MetabolismModels, StatisticalDatabases, FactualHeterotrophic ProcessesBiological EvolutionSoftware DesignGene Expression Regulation, EnzymologicGenome, FungalMutationArabidopsisCellsBacteriaPhototrophic ProcessesReproducibility of ResultsAmino Acids, AromaticInternetGene Knockout TechniquesGene DeletionArchaeaBiochemistryNerve NetGene Expression Regulation, ViralMolecular Sequence AnnotationGenes, EssentialPhylogenyCells, CulturedModels, TheoreticalCell LineDNA-Binding ProteinsClostridium acetobutylicumBacterial ProteinsTranscriptomeMethylobacterium extorquensTime FactorsGlucoseGlyoxylatesSystems TheoryProteomicsPhotobioreactorsSystems IntegrationPrincipal Component AnalysisDatabases, ChemicalEscherichia coli ProteinsBuchneraGenes, Fungal