Gene Expression ProfilingGene ExpressionGene Expression RegulationRNARNA, Small InterferingRNA, MessengerRNA, ViralOligonucleotide Array Sequence AnalysisRNA SplicingRNA EditingBase SequenceRNA, BacterialRNA, RibosomalTranscription, GeneticGene Expression Regulation, DevelopmentalMolecular Sequence DataRNA InterferencePromoter Regions, GeneticReverse Transcriptase Polymerase Chain ReactionTranscription FactorsDNA-Directed RNA PolymerasesGene Expression Regulation, NeoplasticRNA VirusesRNA, Double-StrandedGene Expression Regulation, EnzymologicGene Expression Regulation, PlantGene Expression Regulation, BacterialCell LineRNA Polymerase IIRNA StabilityGene Expression Regulation, ViralRNA, CatalyticRNA Processing, Post-TranscriptionalRNA FoldingRNA, AntisenseRNA, FungalCells, CulturedSignal TransductionRNA, UntranslatedSequence Analysis, RNARNA, PlantMutationRNA HelicasesNucleic Acid ConformationDNA-Binding ProteinsRNA, NeoplasmCluster AnalysisTranscriptomeGene Expression Regulation, FungalRNA PrecursorsAmino Acid SequenceGenes, ReporterRNA, TransferBlotting, NorthernDNA PrimersRNA, Small NuclearTransfectionPolymerase Chain ReactionDNARNA CapsUp-RegulationMicroarray AnalysisBinding SitesCell Line, TumorNuclear ProteinsDNA, ComplementaryDown-RegulationProtein BindingTranscriptional ActivationRNA, ProtozoanIn Situ HybridizationCell DifferentiationCell NucleusNucleic Acid HybridizationProtein BiosynthesisTrans-ActivatorsModels, GeneticPlasmidsRepressor ProteinsPhenotypeRNA-Binding ProteinsTime FactorsHeLa CellsDEAD-box RNA HelicasesReal-Time Polymerase Chain ReactionGene Regulatory NetworksMice, Inbred C57BLLiverGene SilencingComputational BiologyBlotting, WesternRNA, NuclearModels, BiologicalTumor Cells, CulturedRNA Ligase (ATP)Escherichia coliLuciferasesVirus ReplicationRNA Polymerase IIIHistones