Gene Regulatory NetworksGene Expression ProfilingModels, GeneticComputational BiologyAlgorithmsSystems BiologyTranscription FactorsGene Expression Regulation, DevelopmentalComputer SimulationModels, BiologicalOligonucleotide Array Sequence AnalysisSea UrchinsGene Expression RegulationStrongylocentrotus purpuratusSignal TransductionNeural Networks (Computer)Bayes TheoremDatabases, GeneticEchinodermataEmbryo, NonmammalianMetabolic Networks and PathwaysStochastic ProcessesSoftwareEvolution, MolecularGenomicsMicroRNAsTranscriptomeCell Physiological PhenomenaNucleotide MotifsEndodermTranscription, GeneticCluster AnalysisFeedback, PhysiologicalGene Expression Regulation, BacterialModels, StatisticalHomeodomain ProteinsGene Expression Regulation, PlantRegulatory Elements, TranscriptionalSaccharomyces cerevisiaeProtein Interaction MappingProteomeArabidopsisBody PatterningMesodermCell DifferentiationGenes, RegulatorGenomeImmune System PhenomenaMarkov ChainsBinding SitesChromatin ImmunoprecipitationEctodermBiological EvolutionGastrulationCell LineagePromoter Regions, GeneticGene Expression Regulation, FungalNonlinear DynamicsEscherichia coliReproducibility of ResultsCiona intestinalisPosition-Specific Scoring MatricesVertebratesSkeletonBlastulaPhenotypeMolecular Sequence DataStarfishEmbryonic Stem CellsRegulonBase SequenceMutationModels, TheoreticalWork SimplificationLytechinusGenes, PlantEpistasis, GeneticProtein Interaction MapsCaenorhabditis elegansDrosophilaNeural CrestArabidopsis ProteinsPhylogenyUser-Computer InterfaceEmbryonic DevelopmentArtificial IntelligenceConserved SequenceRNA, MessengerData MiningInternetDrosophila melanogasterDrosophila ProteinsIn Situ HybridizationSOXB1 Transcription FactorsUncertaintyTime FactorsBacterial ProteinsBasic Helix-Loop-Helix Transcription FactorsSaccharomyces cerevisiae ProteinsCorynebacterium glutamicum