Enzymes genes which encode proteins bacterial 16s gene rna ribosomal. Medical search. Frequent questions

Here, a genome-wide analysis of the human mitochondrial transcriptome shows that 2'- O -methylation is limited to residues of the mitoribosomal large subunit (mtLSU) 16S mt-rRNA, introduced by MRM1, MRM2 and MRM3, with the modifications installed by the latter two proteins being interdependent. (nature.com)
The human mitochondrial genome is encoded in multiple copies of ~16.6 kb circular double-stranded DNA molecules (mtDNA) present in mitochondrial nucleoids in the mitochondrial matrix. (nature.com)
Expression of this genome entails several, highly regulated processes, with newly synthesised transcripts being cleaved, chemically modified, polyadenylated and further matured in neighbouring structures known as mitochondrial RNA granules (MRGs). (nature.com)
While the RNA components of the mitoribosome are mitochondrially-encoded, all MRPs and assembly factors are encoded in the nuclear genome, thus requiring coordination between two genomes for the assembly of these macromolecular complexes. (nature.com)
Two other major roles for noncoding RNA are in genome defense and in genetic regulation. (printerresource.com)
Using an RNA genome, many viruses are known to encode their genetic information. (printerresource.com)
A. Ribosomal RNA analysis StructRNAfinder - predicts and annotates RNA families in transcript or genome sequences. (printerresource.com)
Keywords Paenibacillus aceti Genome Pyrazine 16S rRNA gene sequences. (sagepub.com)
The aroma compound in the Genome size (bp) 5,611,962 supernatant was detected by headspace solid-phase GC content 47.92% microextraction (HS-SPME) coupled with gas chromatogra- Gene total length (bp) 4,731,522 phy-mass spectrometry (GC-MS) (Li et al. (sagepub.com)
In terms of the distribution of identified genes in a specific category relative to the whole genome, only the categories of PE/PPE and conserved hypotheticals have statistical significance. (hindawi.com)
Here, we announce and describe the complete genome sequence of P. corrugata RM1-1-4 consisting of a single 6.1 Mb circular chromosome that encodes 5189 protein coding genes and 85 RNA-only encoding genes. (biomedcentral.com)
Genome analysis revealed genes predicting functions such as detoxifying mechanisms, stress inhibitors, exoproteases, lipoproteins or volatile components as well as rhizobactin siderophores and spermidine. (biomedcentral.com)
Most, if not all of these transfers seem to be the result of a gene being transferred from the mitochondrial genome of one species to that of another. (biomedcentral.com)
This is critical because, while individual genes or genome fragments provide useful information on the metabolic potential of a community, in practice most biochemical transformations take place inside a cell, involving sets of genes structured in controlled pathways. (biomedcentral.com)
Therefore, in this study, to select P. odoriferum -specific genes, species-specific genes were selected using the data of the P. odoriferum JK2.1 whole genome and similar bacterial species registered with NCBI. (ppjonline.org)
Sequenced genomes were classified using the seven-gene multilocus sequence typing (MLST) scheme and a core genome (cg)MLST scheme was used to determine phylogeny. (cdc.gov)

The phylogenetic analysis of the strain was based on 16S rRNA gene sequencing and showed that Paenibacillus sp. (asm.org)
The genus has been divided into different groups based on 16S rRNA gene sequence similarity. (biomedcentral.com)

They are different from mutations that give bacteria resistance to antibiotics by preventing the antibiotic from getting in or changing the shape of the target protein. (wikipedia.org)
They can also spread easily as they contain genes for constructing pili, which allow them to transfer the R-factor to other bacteria. (wikipedia.org)
R-factors have contributed to the growing antibiotic resistance crisis because they quickly spread resistance genes among bacteria. (wikipedia.org)
Genes in the resistance plasmids enable bacteria to produce Pilli and develop resistance to antibiotics. (wikipedia.org)
MDR genes in bacteria are transmitted mainly through the resistance plasmids. (wikipedia.org)
Distel, D. L., DeLong, E. F., and Waterbury, J. Epub … Bacterial Identification by 16S rRNA Gene Sequence Analysis Background All bacteria contain 16S ribosomal RNA (rRNA) genes of approximately 1500 base pairs (bp) in length. (printerresource.com)
6. I want to study ribosomal RNA expression and potential processing sites in bacteria. (printerresource.com)
A., 1992, The use of 16S ribosomal RNA targeted oligonucleotide probes to study competition between ruminai fibrolytic bacteria. (printerresource.com)
In bacteria , a single RNA polymerase produces the primary transcript precursors for all three major classes of RNA: messenger RNA (mRNA), ribosomal RNA (rRNA), and transfer RNA (tRNA). (basicmedicalkey.com)
Because bacteria do not contain nuclei, ribosomes bind to mRNA as it is being transcribed, and protein synthesis occurs simultaneously with transcription. (basicmedicalkey.com)
The bacteria is gram negative, rod shaped and aerobic belongs to the bacterial family of pseudomonadanceae. (ukessays.com)
Any of the processes by which cytoplasmic or intercellular factors influence the differential control of gene action in bacteria. (lookformedical.com)
An enzyme found in bacteria. (lookformedical.com)
An enzyme system that catalyzes the fixing of nitrogen in soil bacteria and blue-green algae (CYANOBACTERIA). (lookformedical.com)
The helper-drug can target gene products that by any mechanism aid bacteria to resist higher concentrations of an antimicrobial ( Pieren and Tigges, 2012 ). (frontiersin.org)
Besides the ability of bacteria to acquire antimicrobial resistance via horizontal gene transfer or spontaneous mutations, they can also be intrinsically resistant to antimicrobials ( Cox and Wright, 2013 ). (frontiersin.org)
Neither approach relies on the host-bacteria being cultivable, but both largely lack the ability to differentiate between mobilized and non-mobilized genes. (biomedcentral.com)
They used a gene that encodes for 16S ribosomal RNA (rRNA) in bacteria to characterize the nucleotide sequence of the bacillus from a patient with Whipple disease. (medscape.com)
Ribonucleoprotein сomplexes (RNP) are essential in all cellular life forms: Bacteria, Archaea, Eukaryotes and even in non-cellular infectious agent s - RNA viruses. (mdpi.com)

7 ] undertook the first metagenome-based community characterization on amplified 16S rRNA genes. (biomedcentral.com)

The markers generated exploring 16S rRNA gene sequences provided useful tool that can be further used for identification of different species of the genus Streptococcus . (biomedcentral.com)

Environmental sequences of ten novel plastid lineages and structural innovations in plastid proteins confirm that plastids in apicomplexans and their relatives are widespread and share a common, photosynthetic origin. (elifesciences.org)
Specific sequences on DNA, called promoters , determine where the RNA polymerase binds and how frequently it initiates transcription. (basicmedicalkey.com)
In a structural gene, the transcribed region contains the coding sequences that dictate the amino acid sequence of a polypeptide chain. (basicmedicalkey.com)
Exons, which contain the coding sequences for the proteins, are separated in pre-mRNA by introns , regions that have no coding function. (basicmedicalkey.com)
We found no other viral or bacterial sequences. (cdc.gov)
Our search relied primarily on phylogenetic analyses, but also involved scrutiny of each potential case (including generation of new gene sequences from phylogenetically relevant taxa) to rule out artifacts and various types of homoplasy. (biomedcentral.com)

While RNA makes up most of the composition of bacterial and cytosolic eukaryotic ribosomes, mammalian mitochondrial ribosomes present a more elaborate protein shell, which aids coping with the oxidative microenvironment. (nature.com)
The numerous modified nucleotides in eukaryotic ribosomal RNA. (printerresource.com)
Eukaryotic genes are transcribed in the nucleus by three different RNA polymerases , each principally responsible for one of the major classes of RNA. (basicmedicalkey.com)

The most widely understood role of RNA is in protein synthesis, which includes messenger RNA (mRNA), transfer RNA (tRNA) and ribosomal RNA (rRNA) (see Chapter 2). (printerresource.com)
The biological system is complex with many regulatory features such as DNA, mRNA, proteins, metabolites, and epigenetic features such as DNA methylation and histone post-translational modifications (PTMs). (rsc.org)

Moreover, genetic and simple obesity share similar structural and functional features of dysbiosis, such as higher production of toxins with known potential to induce metabolic deteriorations (e.g. trimethylamine-N-oxide and indoxyl sulphate), higher abundance of genomes containing genes coding enzymes involved in the production of these toxic co-metabolites and higher abundance of pathways for biosynthesis of bacterial antigens (such as endotoxin) [13-15]. (deepdyve.com)
Recent multi-omics studies have revealed the heterogeneity and complexity of tumor features such as their genetic mutations, transcriptome, proteins, and signaling pathways. (rsc.org)
This straightforward technique is particularly suitable for large DNA molecules and is therefore ideal for engineering PKS and non-ribosomal peptide synthetase pathways. (mirnamimic.com)

Depending on the organism and availability, mt-tRNA Val or mt-tRNA Phe are incorporated, most likely due to their genomic proximity to mt-rRNA genes and consequent near stoichiometric presence of their transcripts 4 , 8 . (nature.com)
Base modifications occur primarily in tRNA and ribosomal RNA (rRNA), and occur after the RNA is transcribed. (printerresource.com)
There are huge RNP complexes such as RNA viruses, vault complex, ribosome, spliceosome , heterogeneous ribonucleoprotein particles ( hnRNP ) and smaller ones: telomerase, replicase, RNase P, aminoacyl-tRNA synthetases etc. (mdpi.com)

Colonization of the gut starts just after birth when pioneering species interact, through surface receptors, with gut cells to promote the expression of a specific set of host genes and favour the colonization of commensal microorganisms [6]. (deepdyve.com)
rRNA genes contain regions of variable DNA sequence that are unique to the species carrying the … Ribosomal RNA is transcribed from ribosomal DNA (rDNA) and then bound to ribosomal proteins to form small and large ribosome subunits. (printerresource.com)
Proteins found in any species of bacterium. (lookformedical.com)
Species of this genus are known to produce hormones that stimulate plant growth, like cytokinin ( 5 ), and antibiotic peptides as well as different ( 6 ) hydrolyzing enzymes, which are responsible for antagonistic behavior against many plant pathogens. (asm.org)
They used FISH probes informed by publicly available bacterial 16S ribosomal RNA databases to search for Fusobacterium species found in some vaginal samples in past studies. (genomeweb.com)
However, they neither markedly altered the core gut microbiome, which was dominated by three bacterial species, nor detectably colonized the gut environment after the 4-week probiotic treatment. (matis.is)
Discovery of new bacterial species shows little sign of abating, demonstrating the continued need to improve the experimental methods and informatics tooling used to produce metagenome assembled genomes (MAGs) thereby allowing the full microbial diversity to be described. (researchsquare.com)
We identified novel species-specific genes to detect and quantify targeted P. odoriferum and designed specific primer sets targeting HAD family hydrolases. (ppjonline.org)
This segregation was validated using species-specific signatures and in-silico restriction enzyme analysis. (biomedcentral.com)

The DNA strand that directs the sequence of nucleotides in the RNA by complementary base pairing is the template strand. (basicmedicalkey.com)
Constituent of 30S subunit prokaryotic ribosomes containing 1600 nucleotides and 21 proteins. (lookformedical.com)

The Giardia lamblia vsp gene repertoire: characteristics, genomic organization, and evolution. (mbl.edu)
This leads to accurate detection of both known and previously undescribed resistance genes in genomic and metagenomic sequence data. (biomedcentral.com)
2002). A large increase in nikkomycin production was obtained when an extra nikkomycin biosynthetic gene cluster was integrated into the genomic of Saccharopolyspora ansochromogenes (Liao et al. (mirnamimic.com)
In our study, the strategy of direct cloning based on Red/ET technology was applied to obtain the spinosyn biosynthetic gene cluster from the genomic DNA of S. spinosa, which is simple and convenient. (mirnamimic.com)

In this study, we analyzed all genes from sequenced plastid genomes to unearth any neglected cases of HGT and to obtain a measure of the overall extent of HGT to the plastid. (biomedcentral.com)
The genomes' seasonal dynamics follow phylogenetic patterns, but with fine-grained lineage-specific variations, reflected in gene-content. (biomedcentral.com)
We describe the gene content, temporal dynamics and biogeography of a large set of new bacterioplankton genomes assembled from metagenomes. (biomedcentral.com)
Transcripts binning to the genomes of Fe(III)-reducers Anaeromyxobacter , Geobacter , and Pelosinus indicated significant differences in extracellular electron transport (e.g., multiheme cytochrome c , multicopper oxidase, and type-IV pilin gene expression), adhesion/contact (e.g. (biomedcentral.com)

Using 16S ribosomal RNA gene amplicon sequencing and metagenomics, we resolved the microbial community composition on the North and South Shelves of Iceland, analyzed its evolution from 2011 to 2018, identified frequently occurring taxa, and predicted their potential metabolism. (matis.is)
Shotgun metagenomics revealed a total of 112 different mobile antibiotic resistance gene types, conferring resistance against almost all classes of antibiotics. (biomedcentral.com)
However, despite the contributions from metagenomics technologies consequent upon the discovery of novel enzymes, this relatively new enterprise requires major improvements. (biomedcentral.com)
We also describe the unusual enzymes discovered via metagenomics approaches, and discuss the future prospects for metagenome technologies. (biomedcentral.com)

Similar to other systems, the mitochondrial ribosome is composed of a small (mtSSU) and a large (mtLSU) subunit, with their core rRNAs, 12S and 16S mitochondrial (mt-) rRNAs, respectively, surrounded by MRPs (30 for the mtSSU and 52 for the mtLSU). (nature.com)
This study provides evidence that a switch-protein kinase regulatory network controls availability of σ 66 , the main sigma subunit for transcription in Chlamydia . (plos.org)

I also describe the activation of the inactive recombinant enzyme produced in mesophilic Escherichia coli from the viewpoint of the relationship between structure and activity. (go.jp)

Phylogenetic affiliations of mesopelagic acantharia and acantharian-like environmental 18S rRNA genes off the southern California coast. (mbl.edu)
Bacterial identification and phylogenetic analysis were carried out by 16S rRNA gene sequencing. (bvsalud.org)

Many cellular processes, including ribosome biogenesis, are regulated through post-transcriptional RNA modifications. (nature.com)
These complexes have important biological roles in replication of RNA viruses, cellular transcription and translation, post-transcriptional and post- translational modification and also regulation of these processes. (mdpi.com)

RNA polymerase III promoters differ significantly from RNA polymerase II promoters in that they are located downstream from the transcription start site and within the transcribed segment of the DNA. (printerresource.com)
In a Novartis-sponsored study in the New England Journal of Medicine, researchers found that a CRISPR-Cas9-based treatment targeting promoters of genes encoding fetal hemoglobin could reduce disease symptoms. (genomeweb.com)

The present study was taken up to explore 16S rRNA gene sequence to develop methods that can be used for preliminary identification and can supplement the existing methods for identification of clinically-relevant isolates of the genus Streptococcus . (biomedcentral.com)

Among the investigated mobile genetic elements, class 1 integrons (11% relative abundance to 16S rRNA genes) were the most abundant. (biomedcentral.com)
The spinosyn-producing microorganism, S. spinosa, has been shown to be recalcitrant to genetic manipulation and gene transfer processes (Matsushima et al. (mirnamimic.com)
According to [5] the results of biochemical tests used for bacterial identification and bio-typing may show variability due to the action of environmental factors on gene expression, the low discriminatory power of microorganisms with little genetic variability, and the risk of erroneous interpretations. (peertechzpublications.com)

Six among the 42 genes identified in this study are on the list of the top 100 persistence targets selected by the TB Structural Genomics Consortium. (hindawi.com)
structural genes encode proteins that are not involved in gene regulation. (cret-signal.com)
Its N-acetylneuraminic necroptosis regulates a valuable role structural signaling how the transheterophilic number activation of the proteins serves heard once in translation. (erik-mill.de)
Further, protein structural modelling could provide a means of predicting the impact of polymorphisms on drug efficacy in the absence of phenotypic data. (biomedcentral.com)

Moreover, it is well recognized that the excessive use of broad-spectrum antibiotics can affect the relative proportions of gut microbial populations and foster bacterial resistance [24]. (deepdyve.com)

The intergenic DNA segments that are between the ribosomal RNA genes (internal transcribed spacers) and between the tandemly repeated units of rDNA (external transcribed spacers and nontranscribed spacers). (lookformedical.com)
Moreover, the transferred gene has physically replaced the native rpl36 gene, yet flanking genes and intergenic regions show no sign of HGT. (biomedcentral.com)

Plasmid-mediated resistance is the transfer of antibiotic resistance genes which are carried on plasmids. (wikipedia.org)
Plasmids often carry multiple antibiotic resistance genes, contributing to the spread of multidrug-resistance (MDR). (wikipedia.org)
Resistance plasmids by definition carry one or more antibiotic resistance genes. (wikipedia.org)
They are frequently accompanied by the genes encoding virulence determinants, specific enzymes or resistance to toxic heavy metals. (wikipedia.org)
Multiple resistance genes are commonly arranged in the resistance cassettes. (wikipedia.org)
The antibiotic resistance genes found on the plasmids confer resistance to most of the antibiotic classes used nowadays, for example, beta-lactams, fluoroquinolones and aminoglycosides. (wikipedia.org)
It is very common for the resistance genes or entire resistance cassettes to be re-arranged on the same plasmid or be moved to a different plasmid or chromosome by means of recombination systems. (wikipedia.org)
Most of the resistance plasmids are conjugative, meaning that they encode all the needed components for the transfer of the plasmid to another bacterium, and that isn't present in mobilizable plasmids. (wikipedia.org)
They are tiny, circular DNA elements that are self-replicating, that contain antibiotic resistance genes. (wikipedia.org)
Resistance genes are ones that give rise to proteins that modify the antibiotic or pump it out. (wikipedia.org)
R-factors have been known to contain up to ten resistance genes. (wikipedia.org)
The size and number of drug resistance genes in each R factor varies.The RTF is bigger than the R determinant. (wikipedia.org)
they play a role in the autonomous replication, conjugation, and ampicillin resistance genes. (wikipedia.org)
The emergence of antimicrobial resistance severely threatens our ability to treat bacterial infections. (frontiersin.org)
Gene products that confer intrinsic resistance to antimicrobial agents may be explored for alternative antimicrobial therapies, by potentiating the efficacy of existing antimicrobials. (frontiersin.org)
Our results demonstrate that many gene products contribute to the intrinsic antimicrobial resistance of S. aureus . (frontiersin.org)
Intrinsic resistance to antimicrobials has traditionally been attributed to reduced permeability of the cell envelope, presence of inactivating enzymes or efflux pumps that can extrude the antimicrobial agents ( Cox and Wright, 2013 ). (frontiersin.org)
Therefore, we only amplified the pUC replication origin, apramycin resistance gene, and oriT of RK2 from this plasmid as the linear cloning vector. (mirnamimic.com)
WGS was performed on all isolates to detect the presence of genes or mutations previously associated with resistance. (cdc.gov)
RT027 isolates also showed higher MICs to clindamycin and moxifloxacin and were more likely to harbor associated resistance genes or mutations. (cdc.gov)
The lack of vanA/B genes or mutations consistently associated with elevated vancomycin MICs suggests there are multifactorial mechanisms of resistance. (cdc.gov)
The increased carbapenem resistance in isolates with acquired non-carbapenemase -lactamase genes suggests that horizontally transmitted mechanisms aside from carbapenemases themselves may be important drivers of the spread of carbapenem resistance in P. aeruginosa. (cdc.gov)
Protein structure and interaction modelling are used to understand the functional effects of putative mutations and provide insight into the molecular mechanisms leading to resistance. (biomedcentral.com)
The analysis revealed that mutations in the genes rpoB (rifampicin), katG (isoniazid), inhA -promoter (isoniazid), rpsL (streptomycin) and embB (ethambutol) were responsible for the majority of resistance observed. (biomedcentral.com)

4. That is, RNA polymerase II reaches forward to find the start point, and RNA polymerase III reaches backward. (printerresource.com)

Mcl1 antiapoptotic protein is produced by Mtb -infected alveolar macrophages and is important for interrupting apoptosis in infected macrophages by regulating the mitochondrial membrane and blocking the release of cytochrome C and DNA-degrading enzymes [ 7 ⎼ 9 ]. (ajgreenchem.com)

However, the protein-protein interactions between CLas and D. citri are largely unknown. (uibk.ac.at)
In addition, the effect of identified candidate mutations on protein stability and interactions was assessed quantitatively with well-established computational methods. (biomedcentral.com)

The involvement of RNA in such fundamental processes as protein synthesis and RNA processing has led to the idea that ribozymes were more common in early life. (printerresource.com)
A gene is a segment of DNA that functions as a unit to generate an RNA product or, through the processes of transcription and translation, a polypeptide chain. (basicmedicalkey.com)
If these are obtained from isolates, the encoded information can be complemented by phenotypic assays and ecophysiological response experiments to provide insights into the factors that regulate the activity of these populations, in particular biogeochemical processes. (biomedcentral.com)
furthermore, this material is a major asset in the search for new biocatalytics (enzymes) for various industrial processes, including the production of biofuels from plant feedstocks. (biomedcentral.com)

Genotypic identification by 16S rRNA allowed the identification of B15, BM10, and C30 as Lactobacillus plantarum, Lactobacillus casei, and Enterococcus durans, respectively. (calbinotox.fr)
16S rRNA gene sequencing has proved to be one of the most powerful tools for the classification of microorganisms [ 38 ] and has been used for identification of clinically relevant microbes [ 39 , 40 ]. (biomedcentral.com)

With the help of follow-up immunohistochemistry, chromatin immunoprecipitation-qPCR, cytokine profiling, mouse modeling, and other experiments, the team suggested that Fusobacterium infection can boost transforming growth factor beta (TGF-beta) activation, prompting quiescent fibroblast cells to become myofibroblast cells expressing a cytoplasmic microfilament-associated protein known as transgelin (TAGLN). (genomeweb.com)

Subinhibitory concentrations of tetracycline affect virulence gene expression in a multi-resistant Salmonella enterica subsp. (mcmaster.ca)

While only 7 (0.1%) isolates harbored carbapenemase genes, 66 (6.5%) had acquired non-carbapenemase -lactamase genes, and these were more likely to have OprD dysfunction and be resistant to all carbapenems tested. (cdc.gov)

To such effect, I want to perform an RNA-Seq experiment in order to analyze potential rRNA transcripts isoforms and processing sites. (printerresource.com)
The primary transcripts are modified and trimmed to produce the mature RNAs. (basicmedicalkey.com)

In this study, we performed a new bioinformatics analysis on microarray-based gene expression data obtained from the public domain to explore genes that were differentially induced by drugs between the group of capreomycin and PA-824 and the group of mainly the first-line TB drugs. (hindawi.com)
Assessment, transcription aspect binding web-site analysis In one more evaluation, we checked no matter whether the set our process to static information by removing the subscript referring on the time stage from Equation, of target genes containing regarded binding sites for any specific TF have been enriched among the youngster nodes of your JASPAR database. (cret-signal.com)
Consequently, we prepared a peptide hydrolysate by shaving and hydrolysis of surface proteins using trypsin, and the origin of peptides was checked by liquid chromatography-tandem mass spectrometry (LC-MS/MS) analysis. (calbinotox.fr)
Metatranscriptomic analysis and 57 Fe Mössbauer spectroscopy were used to investigate changes in Fe(III)-reducer gene expression and Fe(III) crystallinity, respectively. (biomedcentral.com)
In vitro analysis revealed that a putative switch-protein kinase regulator, RsbW, is capable of interacting directly with σ 66 , as well as phosphorylating its own antagonist, RsbV1, rendering it inactive. (plos.org)
Thereafter, the specificity of the selected gene was tested through blast analysis. (ppjonline.org)

It is encoded by the SSU- rDNA. (printerresource.com)

Traditional labels (such as an enzyme, colloidal gold, and chemical luminescence agent) are combined with antibodies or antigens to prepare probes. (peertechzpublications.com)

We hypothesized that peptides released from the surface proteins of this bacterium during digestion could be implied in this activity. (calbinotox.fr)

For example, inactivation of genes encoding for subunits of the ATP synthase, atpA , atpB , atpG and atpH , reduced the minimum inhibitory concentration (MIC) of gentamicin 16-fold. (frontiersin.org)

In this review, we discuss considerations of the study design for each data feature, the limitations in gene and protein abundance and their rate of expression, the current data integration methods, and microbiome influences on gene and protein expression. (rsc.org)
Fish fed BSFC+, had an increased diversity and evenness of the community compared with conventional protein sources alone, and compared with the other BSF processing methods. (matis.is)
In general, the most known and used methods are Western Blots (WB), Enzyme-Linked Immune Sorbent Assay (ELISA), Lateral-Flow Assay (LFA), and Dot-Blot Assay (DBA) and have been applied in the detection of carcinogenic compounds, pathogenic and allergenic microorganisms using antibodies [8]. (peertechzpublications.com)

A single new case, a bacterial rpl36 gene transferred into the ancestor of the cryptophyte and haptophyte plastids, appears to be a true HGT event. (biomedcentral.com)
Interestingly, this rpl36 gene is a distantly related paralog of the rpl36 type found in other plastids and most eubacteria. (biomedcentral.com)
The plastid acquisition of a bacterial rpl36 gene via HGT provides the first strong evidence for a sister-group relationship between haptophyte and cryptophyte plastids to the exclusion of heterokont and alveolate plastids. (biomedcentral.com)

In addition to the host regulatory mechanisms response to disease, the microbiome can make changes to the expression of the host features such as their genes, proteins, and/or PTMs. (rsc.org)
However, the gut microbiome of fish was significantly altered by both the protein source and the processing method of the BSF larvae. (matis.is)

However, in many cases, the RNA needs further processing before it is functional. (printerresource.com)

HMM accurately predicts the gene fragments belonging to specific gene classes, based on evolutionarily conserved domains [ 11 ]. (biomedcentral.com)

It catalyzes the reduction of FERREDOXIN and other substances in the presence of molecular hydrogen and is involved in the electron transport of bacterial photosynthesis. (lookformedical.com)
A model is proposed where the relative levels of active antagonist (RsbV1) and switch-protein anti-sigma factor (RsbW) control the availability of σ 66 and subsequently act as a molecular 'throttle' for Chlamydia growth and development. (plos.org)

This plasmid shares many genes with the F factor and is largely homologous to it. (wikipedia.org)
The c. 18-kb spinosyn genes in plasmid pUCAmT-spn served as the homologous sequence and guided a single-crossover homologous recombination to generate stable, apramycin-resistant exconjugants with all the genes duplicated. (mirnamimic.com)

As other RNA classes, mt-rRNAs contain modified ribonucleotides which are post-transcriptionally introduced by a set of enzymes. (nature.com)

Our previous study displayed that this activity could be partially due to peptide(s) generated by trypsin hydrolysis of the surface proteins of S. thermophilus LMD-9. (calbinotox.fr)
Additionally, the metatranscriptomic data indicate that Methanobacterium was significantly more active in the reduction of CO 2 to CH 4 and in the expression of class(III) signal peptide/type-IV pilin genes following repeated fast oxygenation compared to slow oxygenation. (biomedcentral.com)

There are two formats in each immunoassay test: 1) sandwich format (for macromolecule detection, such as foodborne pathogens and allergen proteins). (peertechzpublications.com)

He identified periodic acid-Schiff (PAS)-staining granules, most likely representing degenerating bacterial forms, within macrophages isolated from the small bowel as well as other tissue and fluid specimens (eg, pericardium, endocardium, lymph nodes, synovia, lung, brain, meninges) obtained from patients in whom Whipple disease was suspected. (medscape.com)

NDM (0.9% relative abundance to 16S rRNA genes) was the most common carbapenemase gene, followed by OXA-58 (0.84% relative abundance to 16S rRNA genes). (biomedcentral.com)

In this research project we try to quantify the gene expression of the above genes pilB, pslA, lecA, ureB using rpoD as the house keeping gene. (ukessays.com)

P22 has strong 16S rRNA gene sequence similarity to Paenibacillus humicus (99.5%) ( 7 ). (asm.org)

Despite a lack of long-term colonization, the presence of the bacterial strains showed either beneficial or detrimental effects on the host through growth rate enhancement or reduction, as well as changes in fish motility under confinement. (matis.is)

A subset of the mutations identified in rpoB and katG were predicted to affect protein stability. (biomedcentral.com)

The pure culture of the bacterial strain was grown under aerobic conditions on tryptic soy broth agar plates. (asm.org)

The gene expression is quantified using real time PCR. (ukessays.com)
The results from the planktonic and biofilm gene expression results are compared. (ukessays.com)
Studies on the developmental onset of the teleost circadian clock have been carried out in zebrafish and, recently, in rainbow trout and Senegalese sole, where rhythms of clock gene expression entrained by light-dark (LD) cycles have been reported from the first days post fertilization. (researchgate.net)
With that in mind, he and his colleagues turned to gene expression profiling, single-cell RNA sequencing, and fluorescence in situ hybridization (FISH) to assess uterus endometrial fibroblast and ovarian endometriotic lesion samples from individuals with endometriosis and samples from unaffected controls. (genomeweb.com)
category proteins are NO)-induced membranes in Cancers non-pathological as the complex of basis, ligase, specific expression process and domain of tonoplast editing( Giralt JA and Greengard process, 2004). (erik-mill.de)
and the protein expression levels of Pro-IL-1? (calbinotox.fr)
S-layer, adhesin, and flagellin gene expression), and selective microbial competition (e.g., bacteriocin gene expression) between the slow and fast oxygenation treatments during microbial Fe(III) reduction. (biomedcentral.com)
Representative σ 66 -dependent gene transcription was repressed in the absence of rsbV1 or upon increased expression of RsbW, and increased upon elevated expression of RsbV1. (plos.org)
The primary data for 1-step growth, 2-step growth and gene expression summarized in Figs 4 and 5 are available in the S1 Dataset in the supplementary information. (plos.org)
Other candidates that might play an auxiliary role in desilencing PY include TraY, which autoregulates its expression at the PY promoter (Silverman & Sholl, 1996), or another nucleoid-associated protein such as Lrp (Starcic-Erjavec et al. (mirnamimic.com)

30 kb) due to the considerable size of DNA required to encode the conjugation mechanisms that allow for cell-to-cell conjugation. (wikipedia.org)
Results A lignocellulose degrading strain isolated from thermophilic compost was identified as Geobacillus stearothermophilus B5, which could secrete considerable enzymes at the optimal temperature (60°C) and pH (7.5). (researchsquare.com)

2003): (i) the pyrazine ring structure is 5147 protein coding genes, 92 tRNAs, 20 rRNAs and four formed by the condensation of the amidated amino acid with sRNAs. (sagepub.com)

Examples of such systems include integrons, transposons, and ISCR-promoted gene mobilization. (wikipedia.org)

Anatomy10

Organisms16

Diseases10

Chemicals and Drugs122

Analytical, Diagnostic and Therapeutic Techniques and Equipment19

Phenomena and Processes77

Technology, Industry, Agriculture1

Information Science4

Named Groups1

Health Care3

Geographicals2

Genome16

Based on 16S rRNA gene2

Bacteria19

Amplified 16S rRNA1

RRNA gene sequences1

Sequences6

Eukaryotic3

MRNA2

Pathways3

TRNA3

Species9

Nucleotides2

Genomic4

Genomes4

Metagenomics4

Subunit2

Escherichia1

Phylogenetic2

Post-transcriptional2

Promoters2

Genus1

Genetic3

Structural4

Antibiotics1

Intergenic2

Resistance24

Polymerase1

Mitochondrial1

Interactions2

Processes4

Identification2

Cytoplasmic1

Virulence1

Isolates1

Transcripts2

Analysis6

RDNA1

Probes1

Bacterium1

Subunits1

Methods3

Plastids3

Microbiome2

Functional1

Predicts1

Molecular2

Plasmid2

Ribonucleotides1

Peptide2

Pathogens1

Granules1

Carbapenemase1

Quantify1

Paenibacillus1

Presence1

Mutations1

Aerobic1

Expression10

Considerable2

RRNAs1

Integrons1