TranscriptomeGene Expression ProfilingOligonucleotide Array Sequence AnalysisSequence Analysis, RNAMolecular Sequence AnnotationAlgorithmsDatabases, GeneticComputational BiologyExpressed Sequence TagsSoftwareCluster AnalysisHigh-Throughput Nucleotide SequencingGenomicsSequence Analysis, DNAReproducibility of ResultsGene Regulatory NetworksGene OntologyGene Expression Regulation, PlantGene LibraryProteomeTranscription, GeneticGenomeDatabases, FactualGenes, PlantPattern Recognition, AutomatedMicroarray AnalysisRNA, MessengerModels, GeneticContig MappingInternetRNA, PlantPhylogenyModels, StatisticalUser-Computer InterfaceArtificial IntelligenceGene Expression RegulationComputer SimulationDatabases, ProteinData MiningReverse Transcriptase Polymerase Chain ReactionSequence AlignmentDatabases, Nucleic AcidData Interpretation, StatisticalMetabolic Networks and PathwaysProteomicsBayes TheoremInformation Storage and RetrievalPrincipal Component AnalysisMolecular Sequence DataGenome, HumanGene Expression Regulation, BacterialGenome, PlantBase SequenceComputer GraphicsArabidopsisChromosome MappingPolymorphism, Single NucleotideDatabase Management SystemsEvolution, MolecularSequence Analysis, ProteinMetagenomicsStress, PhysiologicalProtein Interaction MappingSignal TransductionModels, BiologicalMicroRNAsRNAAlternative SplicingGene ExpressionProteinsTranscription FactorsMultigene FamilyRNA, UntranslatedGene Expression Regulation, DevelopmentalSpecies SpecificityGenome-Wide Association StudyDNA, ComplementaryRNA IsoformsPlant RootsPhenotypeGenetic VariationReal-Time Polymerase Chain ReactionImaging, Three-DimensionalPlant LeavesMetabolomeSupport Vector MachinesPlant ProteinsSystems BiologySensitivity and SpecificityGenome, FungalSystems IntegrationGenome, BacterialNucleotide MotifsGenetic MarkersGene Expression Regulation, FungalGene Expression Regulation, NeoplasticFlowersMicrosatellite RepeatsOpen Reading FramesImage Interpretation, Computer-Assisted