• SINEs
  • citation needed] The types of RNAs transcribed from RNA polymerase III include: Transfer RNAs 5S ribosomal RNA U6 spliceosomal RNA RNase P and RNase MRP RNA 7SL RNA (the RNA component of the signal recognition particle) Vault RNAs Y RNA SINEs (short interspersed repetitive elements) 7SK RNA Several microRNAs Several small nucleolar RNAs Several gene regulatory antisense RNAs DNA polymerase III holoenzyme Vannini, A. (wikipedia.org)
  • Gene
  • Using advanced instruments, like the MicroSeqTM Fungal LSU rRNA Gene sequencing, GC-FAME, and Fungal BIOLOG to help identify mold and fungus. (environmental-expert.com)
  • The example is also noteworthy in that the sequences giving rise to the anomalous behavior lie entirely within the coding sequences for the major capsid protein (VP1) gene. (springer.com)
  • Second, isolated sequences can be derived directly from clone without knowing tissues expressing the gene which needs to be identified. (wikipedia.org)
  • Pol III is unusual (compared to Pol II) by requiring no control sequences upstream of the gene, instead normally relying on internal control sequences - sequences within the transcribed section of the gene (although upstream sequences are occasionally seen, e.g. (wikipedia.org)
  • Typical stages in a tRNA (also termed class II) gene initiation: TFIIIC (Transcription Factor for polymerase III C) binds to two intragenic (lying within the transcribed DNA sequence) control sequences, the A and B Blocks (also termed box A and box B). TFIIIC acts as an assembly factor that positions TFIIIB to bind to DNA at a site centered approximately 26 base pairs upstream of the start site of transcription. (wikipedia.org)
  • Typical stages in a U6 snRNA (also termed class III) gene initiation (documented in vertebrates only): SNAPc (SNRNA Activating Protein complex) (also termed PBP and PTF) binds to the PSE (Proximal Sequence Element) centered approximately 55 base pairs upstream of the start site of transcription. (wikipedia.org)
  • Outbreaks
  • We conclude that high-throughput sequencing approaches can make a significant contribution to the investigation of outbreaks of bacterial infection and that the integration of WGS with epidemiological investigation, diagnostic assays and antimicrobial susceptibility testing will precipitate radical changes in clinical microbiology and infectious disease epidemiology in the near future. (biomedcentral.com)
  • chromosomes
  • Of these, 324 contigs are anchored to rat genome sequences localized to chromosomes, and 34 contigs are anchored to unlocalized portions of the rat sequence assembly. (wustl.edu)
  • The telomeres at the ends of the chromosomes, thought to be involved in ageing/senescence, consist of repetitive DNA, with the hexanucleotide repeat motif TTAGGG in vertebrates. (wikipedia.org)
  • protein
  • The spa typing technique uses the sequence of a polymorphic VNTR in the 3' coding region of the S. aureus -specific staphylococcal protein A ( spa ). (applied-maths.com)
  • A phylogenetic tree is usually derived from DNA or protein sequences from populations. (wikipedia.org)
  • similarity
  • Nucleotide and amino acid sequence alignment of the C. porosus C-mos coding sequence with avian and reptilian C-mos orthologs reveals greater sequence similarity between C. porosus and birds (specifically chicken and zebra finch) than between C. porosus and squamates (green anole). (biomedcentral.com)
  • typically
  • A microsatellite is a tract of repetitive DNA in which certain DNA motifs (ranging in length from 1-6 or more base pairs) are repeated, typically 5-50 times. (wikipedia.org)
  • segments
  • Controversial references to 'junk' or 'selfish' DNA were put forward early on, implying that repetitive DNA segments are remainders from past evolution or autonomous self-replicating sequences hacking the cell machinery to proliferate. (wikipedia.org)
  • unlike
  • GSSs can provide an initial global view of a genome, which includes both coding and non-coding DNA and contain repetitive section of the genome unlike ESTs. (wikipedia.org)
  • TFIIB remains bound to DNA following initiation of transcription by Pol III (unlike bacterial σ factors and most of the basal transcription factors for Pol II transcription). (wikipedia.org)
  • base pairs
  • VNTRs are a type of minisatellite in which the size of the repeat sequence is generally ten to one hundred base pairs. (wikipedia.org)
  • This assembly is greatly stimulated by the Pol II transcription factors Oct1 and STAF that bind to an enhancer-like DSE (Distal Sequence Element) at least 200 base pairs upstream of the start site of transcription. (wikipedia.org)
  • widely
  • Because of certain technical advantages, including a highly compact genome of about 130 Mb with little interspersed repetitive DNA, Arabidopsis is one of the most widely used model organisms for studying the biology of higher plants. (nsf.gov)
  • Structures
  • Bacterial community fingerprinting refers to a number of cultivation-independent methods that are used to measure biodiversity in environmental samples or to profile microbial community structures, e.g. in response to experimental conditions. (applied-maths.com)
  • library
  • To investigate the utility of the library in studying sequence distribution, probes derived from CR1a and CR1b, two crocodilian CR1-like retrotransposon subfamilies, were hybridized to C. porosus macroarrays. (biomedcentral.com)
  • Following elution, we prepared a sequencing library in 5 minutes using our rapid 1D gDNA kit, and we loaded the library onto a flowcell. (nanoporetech.com)
  • Finally, the sequencing library is loaded onto a MinIONTM flowcell and the run started. (nanoporetech.com)
  • For the estimation of repetitive sequences, GSS plays an important role in the early assessment of a sequencing project since these data can affect the assessment of sequences coverage, library quality and the construction process. (wikipedia.org)
  • analysis
  • Since fragment of DNA can be inserted into sequences, if an exon is inserted into intron, the transcript will be longer than usual and this transcript can be trapped by analysis. (wikipedia.org)
  • example
  • For example, the sequence TATATATATA is a dinucleotide microsatellite, and GTCGTCGTCGTCGTC is a trinucleotide microsatellite (with A being Adenine, G Guanine, C Cytosine, and T Thymine). (wikipedia.org)
  • data
  • The fingerprint map is a high-resolution integrative data resource that provides genome-ordered associations among BAC, YAC, and PAC clones and the assembled sequence of the rat genome. (wustl.edu)
  • The GSS division contains (but is not limited to) the following types of data: Random "single pass read" genome survey sequences is GSSs that generated along single pass read by random selection. (wikipedia.org)