MicrosatelliteGenomicsAPOEPhylogeneticFecal samplesSusceptibleAssayAlleleSpeciesGenesTissuePhenotypeEncephalitisGeneticSensitivityBroadlyMutations2019SpatialStrainsOutbreakPopulationsResponsesOceaniaPrecisionInteractionsProteinsToleranceConservationSamplesMethodsPotentialFieldDataCommonTemperaturePopulationHumanMultipleSensitiveEnvironmentExpressionDiseaseEffectAnalysisCentralHostTechniquesAnimals
Microsatellite1
- They used sequences of maternally inherited mitochondrial DNA and "microsatellite genotypes," or DNA profiles, to both describe the genetic differences and outline migratory connections between both breeding and feeding grounds. (eurekalert.org)
Genomics1
- We divide the field of genomics into genotyping (focused on the genome sequence), transcriptomics (focused on genomic expression) and epigenomics (focused on epigenetic regulation of genome expression). (bmj.com)
APOE1
- Finally, we conducted a linear regression analysis to assess the correlation between the PRSs for the significant genera and the APOE genotypes. (nature.com)
Phylogenetic2
- Molecular characterizations of the microsporidian pathogen Enterocytozoon bieneusi on the ribosomal inside transcribed spacer (ITS) locus have recognized almost 500 genotypes in 11 phylogenetic teams with completely different host ranges. (iowaodes.com)
- Using genotype abundance to improve phylogenetic inference. (cdc.gov)
Fecal samples1
- For instance, a team of researchers successfully used coyote fecal samples to estimate the abundance of a population in Georgia, thereby avoiding the substantial difficulty and consequences involved in trapping and procuring samples from the animals. (wikipedia.org)
Susceptible2
- At the locations where whirling disease has had the greatest impact on resident rainbow trout, T. tubifex, representing lineages I and III (genotypes known to be susceptible to Mxyobolus cerebralis), were most commonly found. (usgs.gov)
- By identifying the genotypes that are less susceptible to heat stress and more likely to survive marine heat waves, there is the potential to prioritise transplantation of favoured genotypes in restoration campaigns. (sims.org.au)
Assay1
- Schmitt M, Dondog B, Waterboer T, Pawlita M, Tommasino M, Gheit T. (2010) Abundance of multiple high-risk human papillomavirus (HPV) infections found in cervical cells analyzed by use of an ultrasensitive HPV genotyping assay. (who.int)
Allele2
- From this data, Kravitz calculated the abundance of each allele across tissues. (the-scientist.com)
- The UltraSEEK technology enhances the sensitivity of the single-allele base extension reaction (SABER) method for MassARRAY genotyping, Agena states. (drugdiscoverynews.com)
Species6
- This study assessed endogenous knowledge and impact of human disturbance on the abundance of two underutilized wild fruit tree species: Drypetes floribunda (Mu¨ll. (researchgate.net)
- One hundred square plots were established in the forest for characterizing species abundance in different habitats according to human disturbance degree. (researchgate.net)
- A densities assessment suggests a negative effect of human disturbance on the abundance of both species. (researchgate.net)
- The steady-state abundance of an RNA species in an organ is, in part, genetically controlled and can be considered a quantitative genetic trait. (biomedcentral.com)
- Certain bycatch species such as rays and sharks, for which abundance has declined strongly during the 20th century, are more sensitive to fishing than the target species themselves, e.g. hake, Nephrops or common sole in the Bay of Biscay. (anr.fr)
- While proven methods exist for estimating the abundance of target species, they are not easily applicable to rays and sharks. (anr.fr)
Genes2
- Wanting to extend the findings to human tissue, he enlisted his former postdoc Stephanie Kravitz to analyze a bulk RNAseq dataset from the genotype tissue expression (GTEx) consortium that included sequences from more than 15,000 genes in 54 tissues from 832 human donors. (the-scientist.com)
- This study assessed the abundance and expression of Stx genes and the expression of host immune genes, aiming to determine factors affecting these measures and potential gene markers to differentiate Stx gene expression in the recto-anal junction of feedlot beef cattle. (frontiersin.org)
Tissue2
- The scientists examined nearly 2,200 tissue biopsy samples collected from humpback whales in 10 feeding regions and eight winter breeding regions during a three-year international study, known as SPLASH (Structure of Populations, Levels of Abundance and Status of Humpbacks). (eurekalert.org)
- The stx1 gene abundance was only detected in tissue samples collected in year 2 and did not differ among breeds. (frontiersin.org)
Phenotype3
- We hypothesised that this phenotype could be due to reduced KAR subunit abundance in fear-related brain regions, i.e. ventral hippocampus, amygdala and medial prefrontal cortex (mPFC). (helsinki.fi)
- Since genotypes and cultures vary across the world, it was not a great leap to realize that the study of gene-nutrient-phenotype associations could only be done through international collaborations. (sciencewatch.com)
- Experimental releases may include females and males and evaluation must consider their effects based on the number released, their genotype and phenotype, the environment into which they are released, and postrelease collection activities. (cdc.gov)
Encephalitis1
Genetic3
- Uncovering the genetic basis of microbial abundance and its effect on AD could suggest lifestyle changes that may reduce an individual's risk for the disease. (nature.com)
- Overall, the host genetic factors influencing the abundance of ten genera are significantly associated with AD, suggesting that these genera may serve as biomarkers and targets for AD treatment and intervention. (nature.com)
- Your genetic potential is known as your genotype. (ironmanmagazine.com)
Sensitivity1
- Those methodologies have analytical sensitivity limited to mutations at 5 to 10 percent abundance. (drugdiscoverynews.com)
Broadly1
- In conservation, noninvasive genotyping has been used to supplement traditional techniques with broadly ranging levels of success. (wikipedia.org)
Mutations1
- While some of these cells may contain mutations that confer resistance to targeted inhibitors, they may comprise such a miniscule component of the tumor that these cells are not detected using standard genotyping and sequencing methodologies. (drugdiscoverynews.com)
20192
- We used closed-capture models to estimate population abundance (N) and precision (CV), which we compared to estimates from concurrent aerial mark-resight surveys in 2019 and 2020. (eventscribe.net)
- For 2019, the abundance estimate from aerial mark-resight surveys was 2,779 deer with a CV = 4.6% and the 2020 results will be available by August 2021. (eventscribe.net)
Spatial1
- We determined spatial distribution of cases on the basis of shared genotypes among isolates. (bvsalud.org)
Strains2
Outbreak1
Populations2
- The predominance of resistant T. tubifex worms (lineages V and VI) at low-impact sites supports the conclusion that when these genotypes are in greater abundance, the potential for more severe effects of whirling disease on wild rainbow trout populations may be diminished. (usgs.gov)
- Catalina Musrri, PhD candidate at the University of Sydney, aims to find the populations of crayweed (genotypes) that are best adapted to temperature by comparing the responses of crayweed genotypes from northern edge and central populations. (sims.org.au)
Responses2
- In this study, to explore the response mechanisms of lncRNAs to LP stress, we used the roots of two representative soybean genotypes that present opposite responses to P deficiency, namely, a P-sensitive genotype (Bogao) and a P-tolerant genotype (NN94156), for the construction of RNA sequencing (RNA-seq) libraries. (biomedcentral.com)
- So far, she has run experiments in the SIMS research aquarium and tested the responses of juvenile crayweed (~6 months) and germlings (a week old) from Port Macquarie, Forster, Palm Beach and Cronulla to marine heatwaves to understand if different genotypes have varying tolerance to increasing temperature. (sims.org.au)
Oceania1
- 2018). Migratory interchange of humpback whales (Megaptera novaeangliae) among breeding grounds of Oceania and connections to Antarctic feeding areas based on genotype matching . (oregonstate.edu)
Precision1
- Our primary goal was to compare precision and cost of fecal DNA mark-recapture surveys to aerial mark-resight surveys for estimating population abundance. (eventscribe.net)
Interactions2
- An analysis of the empirical fitness landscape revealed mutation-by-mutation-by-host-genotype interactions that demonstrate coevolution modified the contours of λ's landscape. (elifesciences.org)
- Large-scale studies on community ecology are highly desirable but often difficult to accomplish due to the considerable investment of time, labor and, money required to characterize richness, abundance, relatedness, and interactions. (springer.com)
Proteins2
- KAR function is regulated by neuropilin and tolloid-like (NETO) proteins, which also regulate postsynaptic GRIK2 abundance. (helsinki.fi)
- Our conclusions are that under stress conditions, the efficiency and capacity for DNA repair mediated by the ATM/RAD9 cell signaling network depend on the abundance of both proteins and that, in general, DNA repair network efficiencies are genotype-dependent and can vary within a specific range. (aacrjournals.org)
Tolerance1
- Within the earlier examine, we recognized arsenate [As(V)]-tolerant (WM) and As(V)-sensitive (GCH 2) genotypes of castor (Ricinus communis L.) with differential accumulation and tolerance of arsenic [As]. (iowaodes.com)
Conservation2
- Noninvasive genotyping is widely utilized in conservation efforts, where capture and sampling may be difficult or disruptive to behavior. (wikipedia.org)
- Despite the potential that noninvasive genotyping has in conservation genetics efforts, the efficiency of this method is in question, as field samples often suffer from degradation and contamination or are difficult to procure. (wikipedia.org)
Samples3
- The method by which samples are collected in noninvasive genotyping is what separates the technique from traditional genotyping, and there are a number of ways that this is accomplished. (wikipedia.org)
- After samples were individually genotyped, we constructed capture histories for four sessions conducted each winter. (eventscribe.net)
- DNA extracts of these samples were amplified by PCR and genotyped by spoligotyping. (who.int)
Methods1
- This method has been successful for estimating abundance in areas where it's difficult to use resighting methods but hasn't been evaluated on winter ranges where traditional methods work well. (eventscribe.net)
Potential1
- The economic analysis will evaluate whether fecal DNA mark-recapture has potential as a cost-effective and non-invasive method for estimating population abundance. (eventscribe.net)
Field1
- Woodruff, David S. "Noninvasive genotyping and field studies of free-ranging nonhuman primates. (wikipedia.org)
Data1
- Is there genome-wide genotyping or functional data available? (ebisc.org)
Common1
- The most common use of noninvasive genotyping in medicine is non-invasive prenatal diagnosis (NIPD), which provides an alternative to riskier techniques such as amniocentesis. (wikipedia.org)
Temperature1
- These organisms dwell throughout the ocean in diverse oceanic regimes from tropical to polar water masses in abundances determined by physico-chemical properties, most notably temperature, but also nutrient and oxygen availability, water column stratification, salinity, turbidity, and carbonate saturation of seawater (e.g. (frontiersin.org)
Population1
- These drawbacks motivated us to evaluate fecal DNA-based mark-recapture, a non-invasive method for estimating population abundance. (eventscribe.net)
Human1
- For example, while the average human musculature features a 50/50 balance of fast-twitch and slow-twitch muscle fibers, research has shown that elite long-distance runners have an abundance of slow-twitch fibers'up to 90 percent'which enables them to metabolize oxygen more effectively than the average person. (ironmanmagazine.com)
Multiple1
- These concepts were rooted in the studies in humans and laboratory animals conducted in the 1990s and early 2000s which demonstrated the need for analyzing multiple genotypes and multiple diets in order to understand biological processes. (sciencewatch.com)
Sensitive1
- These results revealed that LP stress can significantly alter the genome-wide profiles of lncRNAs, particularly those of the P-sensitive genotype Bogao. (biomedcentral.com)
Environment1
- In cellular environment protein abundance and half-life are determined by ubiquitin-proteasomal system. (lu.se)
Expression1
- The abundance and expression of stx1 and stx2 were quantified using qPCR and reverse-transcription-qPCR (RT-qPCR), respectively. (frontiersin.org)
Disease1
- Exposure to antibiotic regimens early in development both dramatically shifted the bacterial abundance and led to accelerated disease [ 10 ]. (biomedcentral.com)
Effect1
- Also, an effect on synaptic KAR subunit abundance might be specific to either pre- or postsynaptic compartment, and thus more difficult to detect in SYN fractions. (helsinki.fi)
Analysis1
- 2020 ). Protein abundances for CYP2D6 and CYP3A4 were determined via MS/MS analysis. (aspetjournals.org)
Central1
- There are three distinct genotypes of CHIKV: (1) Asian, (2) Eastern/Central/Southern African (ECSA), and (3) Western African. (who.int)
Host1
- By coupling sequencing and pairwise competition experiments, we demonstrated that the first mutation λ evolved en route to the innovation would only evolve in the presence of the ancestral host, whereas later steps in λ's evolution required the shift to a resistant host. (elifesciences.org)
Techniques1
- Although, the number of OMICS techniques is ever expanding, the five most developed OMICS technologies are genotyping, transcriptomics, epigenomics, proteomics and metabolomics. (bmj.com)
Animals1
- However, it has been particularly difficult to adequately characterize communities of these animals because of their exceptionally high diversity and abundance. (springer.com)