Namely genes which encode proteins bacterial 16s gene rna ribosomal. Medical search. Frequent questions

The most widely understood role of RNA is in protein synthesis, which includes messenger RNA (mRNA), transfer RNA (tRNA) and ribosomal RNA (rRNA) (see Chapter 2). (printerresource.com)
Base modifications occur primarily in tRNA and ribosomal RNA (rRNA), and occur after the RNA is transcribed. (printerresource.com)
Depending on the organism and availability, mt-tRNA Val or mt-tRNA Phe are incorporated, most likely due to their genomic proximity to mt-rRNA genes and consequent near stoichiometric presence of their transcripts 4 , 8 . (nature.com)
In bacteria , a single RNA polymerase produces the primary transcript precursors for all three major classes of RNA: messenger RNA (mRNA), ribosomal RNA (rRNA), and transfer RNA (tRNA). (basicmedicalkey.com)
The genome has also experienced a major reduction in tRNA gene content, including loss of functional tRNAs of both native and chloroplast origin. (biomedcentral.com)
Plant mitochondrial genomes contain genes for their own rRNA subunits as well as for some of the ribosomal proteins and tRNAs required for translation (Figure 1 ), but many necessary ribosomal protein and tRNA genes are located in the nuclear genome, so their gene products must be imported into the mitochondrion [ 15 ]. (biomedcentral.com)
Sequence and primer extension analysis revealed the presence of putative genes encoding tRNA lle and tRNA Ala within the 16S-23S spacer region, as well as a number of potential regulatory features. (microbiologyresearch.org)

Our work with VIRGO has revealed just how much genetic diversity there is within a woman's vaginal microbiota, as well as within bacterial species in the vagina. (technologynetworks.com)
rRNA genes contain regions of variable DNA sequence that are unique to the species carrying the … Ribosomal RNA is transcribed from ribosomal DNA (rDNA) and then bound to ribosomal proteins to form small and large ribosome subunits. (printerresource.com)
Colonization of the gut starts just after birth when pioneering species interact, through surface receptors, with gut cells to promote the expression of a specific set of host genes and favour the colonization of commensal microorganisms [6]. (deepdyve.com)
combined with metagenomics has uncovered thousands of novel bacterial species directly from samples without isolation or culturing. (helmholtz-hzi.de)
They used FISH probes informed by publicly available bacterial 16S ribosomal RNA databases to search for Fusobacterium species found in some vaginal samples in past studies. (genomeweb.com)
Proteins found in any species of bacterium. (lookformedical.com)
Mitochondrial gene loss and functional transfer to the nucleus is an ongoing process in many lineages of plants, resulting in substantial variation across species in mitochondrial gene content. (biomedcentral.com)
However, they neither markedly altered the core gut microbiome, which was dominated by three bacterial species, nor detectably colonized the gut environment after the 4-week probiotic treatment. (matis.is)
Discovery of new bacterial species shows little sign of abating, demonstrating the continued need to improve the experimental methods and informatics tooling used to produce metagenome assembled genomes (MAGs) thereby allowing the full microbial diversity to be described. (researchsquare.com)
7) The human gut alone contains on average: 40,000 bacterial species, 8) 9 million unique bacterial genes and 100 trillion microbial cells. (mpkb.org)
While commercial kits target rRNA from common bacterial species, they are frequently inefficient when applied to divergent species, including those from environmental isolates. (deylab.com)
Therefore, we present EMBR-seq+, which requires fewer than ten oligonucleotides per rRNA by combining rRNA blocking primers with RNase H-mediated depletion to achieve rRNA removal efficiencies of up to 99% in diverse bacterial species. (deylab.com)

The biological system is complex with many regulatory features such as DNA, mRNA, proteins, metabolites, and epigenetic features such as DNA methylation and histone post-translational modifications (PTMs). (rsc.org)
Because bacteria do not contain nuclei, ribosomes bind to mRNA as it is being transcribed, and protein synthesis occurs simultaneously with transcription. (basicmedicalkey.com)
Exons, which contain the coding sequences for the proteins, are separated in pre-mRNA by introns , regions that have no coding function. (basicmedicalkey.com)
Gene expression also relies on extensive C-to-U (and sometimes U-to-C) RNA editing, in which substitution of specific pyrimidines in the mRNA sequence restores phylogenetically conserved codons [ 8 ]. (biomedcentral.com)
Bacterial mRNA sequencing is inefficient due to the abundance of ribosomal RNA that is challenging to deplete. (deylab.com)

Plasmid-mediated resistance is the transfer of antibiotic resistance genes which are carried on plasmids. (wikipedia.org)
Plasmids often carry multiple antibiotic resistance genes, contributing to the spread of multidrug-resistance (MDR). (wikipedia.org)
Resistance plasmids by definition carry one or more antibiotic resistance genes. (wikipedia.org)
The antibiotic resistance genes found on the plasmids confer resistance to most of the antibiotic classes used nowadays, for example, beta-lactams, fluoroquinolones and aminoglycosides. (wikipedia.org)
They are tiny, circular DNA elements that are self-replicating, that contain antibiotic resistance genes. (wikipedia.org)
The draft genomes encode multiple antibiotic-resistance genes, competition factors, Flavobacterium johnsoniae-like gliding motility genes and a homologue of the Pasteurella multocida mitogenic toxin. (ox.ac.uk)

Moreover, genetic and simple obesity share similar structural and functional features of dysbiosis, such as higher production of toxins with known potential to induce metabolic deteriorations (e.g. trimethylamine-N-oxide and indoxyl sulphate), higher abundance of genomes containing genes coding enzymes involved in the production of these toxic co-metabolites and higher abundance of pathways for biosynthesis of bacterial antigens (such as endotoxin) [13-15]. (deepdyve.com)
While the RNA components of the mitoribosome are mitochondrially-encoded, all MRPs and assembly factors are encoded in the nuclear genome, thus requiring coordination between two genomes for the assembly of these macromolecular complexes. (nature.com)
For example, a complete 16S rRNA gene sequence can be obtained by analyzing the sequences of genomes or large genome fragments, providing taxonomic information along with information on other functional genes. (frontiersin.org)
Angiosperm mitochondrial genomes also contain numerous introns, some of which have been split such that the resulting gene fragments must be transcribed separately and then trans- spliced together [ 7 ]. (biomedcentral.com)
13) The combined genetic contributions of these microbes - in excess of 1,000,000 protein-coding genes - provide traits not encoded in our own genomes. (mpkb.org)
Sequenced genomes were classified using the seven-gene multilocus sequence typing (MLST) scheme and a core genome (cg)MLST scheme was used to determine phylogeny. (cdc.gov)

Researchers from the University of Maryland School of Medicine's (UMSOM) Institute for Genome Sciences (IGS) have created VIRGO (human vaginal non-redundant gene catalog): the first genomic catalog of the vaginal microbiome. (technologynetworks.com)
Two other major roles for noncoding RNA are in genome defense and in genetic regulation. (printerresource.com)
Using an RNA genome, many viruses are known to encode their genetic information. (printerresource.com)
A. Ribosomal RNA analysis StructRNAfinder - predicts and annotates RNA families in transcript or genome sequences. (printerresource.com)
Here, a genome-wide analysis of the human mitochondrial transcriptome shows that 2'- O -methylation is limited to residues of the mitoribosomal large subunit (mtLSU) 16S mt-rRNA, introduced by MRM1, MRM2 and MRM3, with the modifications installed by the latter two proteins being interdependent. (nature.com)
The human mitochondrial genome is encoded in multiple copies of ~16.6 kb circular double-stranded DNA molecules (mtDNA) present in mitochondrial nucleoids in the mitochondrial matrix. (nature.com)
Expression of this genome entails several, highly regulated processes, with newly synthesised transcripts being cleaved, chemically modified, polyadenylated and further matured in neighbouring structures known as mitochondrial RNA granules (MRGs). (nature.com)
To determine if ETBF-induced mutations impact the Apc gene, and other tumor suppressors or proto-oncogenes, we performed whole-exome sequencing and whole-genome sequencing on tumors isolated after ETBF and sham colonization of Apcmin/+ and Apcmin/+Msh2fl/flVC mice, as well as whole-genome sequencing of organoids cocultured with ETBF. (bvsalud.org)
In terms of the distribution of identified genes in a specific category relative to the whole genome, only the categories of PE/PPE and conserved hypotheticals have statistical significance. (hindawi.com)
Keywords Paenibacillus aceti Genome Pyrazine 16S rRNA gene sequences. (sagepub.com)
The aroma compound in the Genome size (bp) 5,611,962 supernatant was detected by headspace solid-phase GC content 47.92% microextraction (HS-SPME) coupled with gas chromatogra- Gene total length (bp) 4,731,522 phy-mass spectrometry (GC-MS) (Li et al. (sagepub.com)
The genome contains the fewest genes of any angiosperm mitochondrial genome sequenced to date, with intact copies of only 25 of the 41 protein genes inferred to be present in the common ancestor of angiosperms. (biomedcentral.com)
1) "native" tRNAs encoded in the mitochondrial genome and inherited from the α-proteobacterial progenitor of mitochondria, 2) chloroplast-like tRNAs, which are also encoded in the mitochondrial genome but which were acquired by functional gene transfer from the chloroplast genome during land plant evolution, and 3) nuclear-encoded tRNAs imported from the cytosol. (biomedcentral.com)
Here, we announce and describe the complete genome sequence of P. corrugata RM1-1-4 consisting of a single 6.1 Mb circular chromosome that encodes 5189 protein coding genes and 85 RNA-only encoding genes. (biomedcentral.com)
Genome analysis revealed genes predicting functions such as detoxifying mechanisms, stress inhibitors, exoproteases, lipoproteins or volatile components as well as rhizobactin siderophores and spermidine. (biomedcentral.com)
The sheer number of non-human genes represented by the human microbiota - there are millions in our "extended genome" 2) compared to the nearly 23,000 in the human genome - implies we have just begun to fathom the full extent to which bacteria work to facilitate their own survival. (mpkb.org)
9) According to Asher Mullard, "Between them [the bacteria in our bodies], they harbor millions of genes, compared with the paltry 20,000 estimated in the human genome. (mpkb.org)
Genes in the human microbiota far outnumber those in the human genome. (mpkb.org)

Distel, D. L., DeLong, E. F., and Waterbury, J. Epub … Bacterial Identification by 16S rRNA Gene Sequence Analysis Background All bacteria contain 16S ribosomal RNA (rRNA) genes of approximately 1500 base pairs (bp) in length. (printerresource.com)
P22 has strong 16S rRNA gene sequence similarity to Paenibacillus humicus (99.5%) ( 7 ). (asm.org)

All bacteria carry ribosomes that consist of proteins and RNAs. (technologynetworks.com)
They are different from mutations that give bacteria resistance to antibiotics by preventing the antibiotic from getting in or changing the shape of the target protein. (wikipedia.org)
They can also spread easily as they contain genes for constructing pili, which allow them to transfer the R-factor to other bacteria. (wikipedia.org)
R-factors have contributed to the growing antibiotic resistance crisis because they quickly spread resistance genes among bacteria. (wikipedia.org)
Genes in the resistance plasmids enable bacteria to produce Pilli and develop resistance to antibiotics. (wikipedia.org)
MDR genes in bacteria are transmitted mainly through the resistance plasmids. (wikipedia.org)
6. I want to study ribosomal RNA expression and potential processing sites in bacteria. (printerresource.com)
A., 1992, The use of 16S ribosomal RNA targeted oligonucleotide probes to study competition between ruminai fibrolytic bacteria. (printerresource.com)
The bacteria is gram negative, rod shaped and aerobic belongs to the bacterial family of pseudomonadanceae. (ukessays.com)
They used a gene that encodes for 16S ribosomal RNA (rRNA) in bacteria to characterize the nucleotide sequence of the bacillus from a patient with Whipple disease. (medscape.com)
Any of the processes by which cytoplasmic or intercellular factors influence the differential control of gene action in bacteria. (lookformedical.com)
Neither approach relies on the host-bacteria being cultivable, but both largely lack the ability to differentiate between mobilized and non-mobilized genes. (biomedcentral.com)
based methods for culturing bacteria have drastically underrepresented the size and diversity of bacterial populations. (mpkb.org)
Phylogenetic analyses of 16S rRNA support close relationships between the Gammaproteobacteria Sodalis glossinidius, a tsetse (Diptera: Glossinidae) symbiont, and bacteria infecting diverse insect orders. (a-inhibitor.com)
Surface-encoding PD-1 inhibiton genes varied in their phylogenetic resolution of Sodalis and related bacteria, suggesting conserved vs. host-specific roles. (a-inhibitor.com)
The application of outer membrane genes as markers for further delineating the systematics of recently diverged bacteria is discussed. (a-inhibitor.com)

CF27 exhibits a large number of genomic islands (mostly containing genes of unknown function), suggesting that a large number of genes has been acquired by horizontal gene transfer over time. (frontiersin.org)
The Giardia lamblia vsp gene repertoire: characteristics, genomic organization, and evolution. (mbl.edu)
This leads to accurate detection of both known and previously undescribed resistance genes in genomic and metagenomic sequence data. (biomedcentral.com)
New genomic based methods such as polymerase chain reaction ( PCR ) detect bacterial forms based on the presence of bacterial DNA or RNA. (mpkb.org)

The numerous modified nucleotides in eukaryotic ribosomal RNA. (printerresource.com)
While RNA makes up most of the composition of bacterial and cytosolic eukaryotic ribosomes, mammalian mitochondrial ribosomes present a more elaborate protein shell, which aids coping with the oxidative microenvironment. (nature.com)
Eukaryotic genes are transcribed in the nucleus by three different RNA polymerases , each principally responsible for one of the major classes of RNA. (basicmedicalkey.com)

Environmental sequences of ten novel plastid lineages and structural innovations in plastid proteins confirm that plastids in apicomplexans and their relatives are widespread and share a common, photosynthetic origin. (elifesciences.org)
To obtain a better understanding of metabolically active microbial communities, we tested a molecular ecological approach using poly(A) tailing of environmental 16S rRNA, followed by full-length complementary DNA (cDNA) synthesis and sequencing to eliminate potential biases caused by mismatching of polymerase chain reaction (PCR) primer sequences. (frontiersin.org)
The four archaeal 16S rRNA sequences that were obtained using the poly(A) tailing method formed deeply branching lineages that were related to Candidatus "Parvarchaeum" and the ancient archaeal group. (frontiersin.org)
Considering the current limitations of NGS technology, full-length 16S rRNA gene sequences are better suited to downstream analytical methods such as fluorescence in situ hybridization. (frontiersin.org)
The original designs of most of the PCR primers used for the analysis of 16S rRNA genes were based on known sequences deposited in public databases. (frontiersin.org)
Specific sequences on DNA, called promoters , determine where the RNA polymerase binds and how frequently it initiates transcription. (basicmedicalkey.com)
In a structural gene, the transcribed region contains the coding sequences that dictate the amino acid sequence of a polypeptide chain. (basicmedicalkey.com)
classification of new phytoplasmas associated with diseases of strawberry in florida, based on analysis of 16s rrna and ribosomal protein gene operon sequences. (liverpool.ac.uk)
since the symptoms were suggestive of phytoplasma infection, plants were assayed for presence of phytoplasma by pcr amplification of 16s rdna and ribosomal protein (rp) gene sequences. (liverpool.ac.uk)
analysis of 16s rrna gene sequences amplified by pcr indicated that the symptoms were associated with infection by a phytoplasma, designated strawberry yellows (strawy) phytoplasma. (liverpool.ac.uk)
primers designed from sequences of the gene encoding the elongation factor tu (tuf gene) of several culturable mollicutes amplified most of the tuf gene from phytoplasmas of the aster yellows, stolbur and x-disease groups. (liverpool.ac.uk)
Notably, for microbes with unknown rRNA sequences, EMBR-seq+ enables rapid iterations in probe design without requiring to start experiments from total RNA. (deylab.com)
These elements included a single promoter, which was mapped upstream of the 16S rRNA gene and which was similar to Escherichia coli consensus promoter sequences, an AT-rich upstream region, a GC-rich motif that may be involved in stringent control, leader and spacer antitermination sequences, sites for ribonuclease processing, and a putative factor-independent terminator sequence. (microbiologyresearch.org)
Berg K.L. , Squires C. , Squires C.L. Ribosomal RNA operon anti-termination Function of leader and spacer region box B-box A sequences and their conservation in diverse microorganisms. (microbiologyresearch.org)

Furthermore, instead of 5S rRNA, structurally similar mtDNA-encoded tRNAs occupy an equivalent region in the central protuberance of the mtLSU. (nature.com)
2003): (i) the pyrazine ring structure is 5147 protein coding genes, 92 tRNAs, 20 rRNAs and four formed by the condensation of the amidated amino acid with sRNAs. (sagepub.com)

The Department of "Computational Biology for Infection Research" studies the human microbiome, viral and bacterial pathogens, and human cell lineages within individual patients by analysis of large-scale biological and epidemiological data sets with computational techniques. (helmholtz-hzi.de)
In this review, we discuss considerations of the study design for each data feature, the limitations in gene and protein abundance and their rate of expression, the current data integration methods, and microbiome influences on gene and protein expression. (rsc.org)
In addition to the host regulatory mechanisms response to disease, the microbiome can make changes to the expression of the host features such as their genes, proteins, and/or PTMs. (rsc.org)
However, the gut microbiome of fish was significantly altered by both the protein source and the processing method of the BSF larvae. (matis.is)

The DNA strand that directs the sequence of nucleotides in the RNA by complementary base pairing is the template strand. (basicmedicalkey.com)
Constituent of 30S subunit prokaryotic ribosomes containing 1600 nucleotides and 21 proteins. (lookformedical.com)

the scfv gene was cloned and expressed in escherichia coli. (liverpool.ac.uk)
Boros I. , Csordés-Tôth E. , Kiss A. , Tôrôk I. , Udvardy K. , Venetianer P. Identification of two new promoters probably involved in the transcription of a ribosomal RNA gene of Escherichia coli. (microbiologyresearch.org)
Brosius J. , Dull D.J. , Sleeter D.D. , Noller H.F. Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. (microbiologyresearch.org)

RNA polymerase III promoters differ significantly from RNA polymerase II promoters in that they are located downstream from the transcription start site and within the transcribed segment of the DNA. (printerresource.com)
In a Novartis-sponsored study in the New England Journal of Medicine, researchers found that a CRISPR-Cas9-based treatment targeting promoters of genes encoding fetal hemoglobin could reduce disease symptoms. (genomeweb.com)

For example, translation of mitochondrially-encoded genes requires a mix of nuclear and mitochondrially encoded components. (biomedcentral.com)

According to a recent National Institutes of Health (NIH) estimate, 90% of cells in the human body are bacterial, fungal, or otherwise non-human. (mpkb.org)
Further, in more complex microbial co-cultures between F. succinogenes strain UWB7 and anerobic fungi, EMBR-seq+ depleted both bacterial and fungal rRNA, with a 4-fold improvement in bacterial rRNA depletion compared to a commercial kit, thereby demonstrating that the method can be applied to non-model microbial mixtures. (deylab.com)

Similar to other systems, the mitochondrial ribosome is composed of a small (mtSSU) and a large (mtLSU) subunit, with their core rRNAs, 12S and 16S mitochondrial (mt-) rRNAs, respectively, surrounded by MRPs (30 for the mtSSU and 52 for the mtLSU). (nature.com)
Anderson B.J. , Bills M.M. , Egerton J.R. , Mattick J.S. Cloning and expression in E coli of the gene encoding the structural subunit of Bacteroides nodosus fimbriae. (microbiologyresearch.org)

However, in many cases, the RNA needs further processing before it is functional. (printerresource.com)
High throughput sequencing of amplified integron gene cassettes identified a novel functional variant of an IMP-type (proposed IMP-81) carbapenemase gene (eight aa substitutions) along with recently described novel resistance genes like sul4 and bla RSA1 . (biomedcentral.com)

Numerous studies on natural microbial communities from a variety of environments have been undertaken using 16S rRNA gene sequencing mediated by polymerase chain reaction (PCR) with oligonucleotide primers. (frontiersin.org)

The phylogenetic analysis of the strain was based on 16S rRNA gene sequencing and showed that Paenibacillus sp. (asm.org)

They are frequently accompanied by the genes encoding virulence determinants, specific enzymes or resistance to toxic heavy metals. (wikipedia.org)
Subinhibitory concentrations of tetracycline affect virulence gene expression in a multi-resistant Salmonella enterica subsp. (mcmaster.ca)
Presence of virulence genes in STEC and apathogenic E. coli strains The 52 STEC strains investigated in this study belonged to 20 different serotypes (Table 2). (micrornaassay.com)
In order to explore this relationship between EPEC and EHEC more closely, we investigated larger numbers of strains and serotypes of typical and atypical EPEC for thirteen virulence genes associated with EHEC O157 O-islands OI-122, OI-71, OI-57, the EHEC-plasmid and prophage CP-933N. (micrornaassay.com)
2007). Virulence regulation systems, exemplified by VjbR and BvrR/BvrS, regulate the expression of membrane proteins. (a-inhibitor.com)

Baylis H.A. , Bibb M.J. Organization of the ribosomal RNA genes in Streptomjces coelicolor A3(2). (microbiologyresearch.org)

It is encoded by the SSU- rDNA. (printerresource.com)
The intergenic DNA segments that are between the ribosomal RNA genes (internal transcribed spacers) and between the tandemly repeated units of rDNA (external transcribed spacers and nontranscribed spacers). (lookformedical.com)

NDM (0.9% relative abundance to 16S rRNA genes) was the most common carbapenemase gene, followed by OXA-58 (0.84% relative abundance to 16S rRNA genes). (biomedcentral.com)
Among the investigated mobile genetic elements, class 1 integrons (11% relative abundance to 16S rRNA genes) were the most abundant. (biomedcentral.com)

phytoplasmas are unculturable bacterial plant pathogens transmitted by phloem-feeding hemipteran insects. (liverpool.ac.uk)

As other RNA classes, mt-rRNAs contain modified ribonucleotides which are post-transcriptionally introduced by a set of enzymes. (nature.com)
Mcl1 antiapoptotic protein is produced by Mtb -infected alveolar macrophages and is important for interrupting apoptosis in infected macrophages by regulating the mitochondrial membrane and blocking the release of cytochrome C and DNA-degrading enzymes [ 7 ⎼ 9 ]. (ajgreenchem.com)
Genes are transcribed by enzymes called RNA polymerases that generate a single-stranded RNA identical in sequence (with the exception of U in place of T) to one of the strands of the double-stranded DNA. (basicmedicalkey.com)

Shotgun metagenomics revealed a total of 112 different mobile antibiotic resistance gene types, conferring resistance against almost all classes of antibiotics. (biomedcentral.com)
Using 16S ribosomal RNA gene amplicon sequencing and metagenomics, we resolved the microbial community composition on the North and South Shelves of Iceland, analyzed its evolution from 2011 to 2018, identified frequently occurring taxa, and predicted their potential metabolism. (matis.is)

They are widely used to study bacterial interactions with epithelial cells yet they do not represent an adequate host cell type to mimic human gastrointestinal infections. (micrornaassay.com)
However, the protein-protein interactions between CLas and D. citri are largely unknown. (uibk.ac.at)

The study also demonstrates that the microbiota of hospital wastewater can serve as a reservoir of novel resistance genes, including previously uncharacterized carbapenemases with the potential to spread further. (biomedcentral.com)
human microbiota The bacterial community in the human body. (mpkb.org)

In this study, we performed a new bioinformatics analysis on microarray-based gene expression data obtained from the public domain to explore genes that were differentially induced by drugs between the group of capreomycin and PA-824 and the group of mainly the first-line TB drugs. (hindawi.com)
catharanthus roseus genes regulated differentially by mollicute infections. (liverpool.ac.uk)

Moreover, it is well recognized that the excessive use of broad-spectrum antibiotics can affect the relative proportions of gut microbial populations and foster bacterial resistance [24]. (deepdyve.com)

It catalyzes the reduction of FERREDOXIN and other substances in the presence of molecular hydrogen and is involved in the electron transport of bacterial photosynthesis. (lookformedical.com)
Despite a lack of long-term colonization, the presence of the bacterial strains showed either beneficial or detrimental effects on the host through growth rate enhancement or reduction, as well as changes in fish motility under confinement. (matis.is)
Finally, efficient depletion of rRNA enabled systematic quantification of the reprogramming of the bacterial transcriptome when cultured in the presence of the anerobic fungi Anaeromyces robustus or Caecomyces churrovis. (deylab.com)
In a previous work, we were able to associate the presence of OI-122 and OI-71 encoded genes with an ""EHEC-Cluster"" comprising forty-four EHEC strains as well as eight of twenty-one EPEC strains investigated [17]. (micrornaassay.com)
WGS was performed on all isolates to detect the presence of genes or mutations previously associated with resistance. (cdc.gov)

It is very common for the resistance genes or entire resistance cassettes to be re-arranged on the same plasmid or be moved to a different plasmid or chromosome by means of recombination systems. (wikipedia.org)
Most of the resistance plasmids are conjugative, meaning that they encode all the needed components for the transfer of the plasmid to another bacterium, and that isn't present in mobilizable plasmids. (wikipedia.org)
This plasmid shares many genes with the F factor and is largely homologous to it. (wikipedia.org)
Forty Chk inhibitor (50%) of the 80 serotypes encompassing Erastin solubility dmso atypical EPEC were associated with strains carrying one or more of the EHEC-plasmid genes ehxA, katP, etpD, espP. (micrornaassay.com)
stx-genes, 33 (63.5%) of 52 STEC were positive for one or more of EHEC-plasmid associated genes ehxA, espP and katP. (micrornaassay.com)
None of the STEC was positive for the plasmid etpD gene as for all other nle-genes investigated in this study (Table 1). (micrornaassay.com)

Through a clever multi-omics design, the authors were able to use three major types of integrated analyses to identify differences in encoded and expressed microbial functions that were involved in the BPA-degrading microbial community. (rsc.org)

Recent multi-omics studies have revealed the heterogeneity and complexity of tumor features such as their genetic mutations, transcriptome, proteins, and signaling pathways. (rsc.org)

To further examine the evolutionary relationships of these Sodalis-like symbionts, phylogenetic trees were constructed for a subset of putative surface-encoding genes (i.e. ompA, spr, slyB, rcsF, ycfM, and ompC). (a-inhibitor.com)

Six among the 42 genes identified in this study are on the list of the top 100 persistence targets selected by the TB Structural Genomics Consortium. (hindawi.com)
structural genes encode proteins that are not involved in gene regulation. (cret-signal.com)

To such effect, I want to perform an RNA-Seq experiment in order to analyze potential rRNA transcripts isoforms and processing sites. (printerresource.com)
The primary transcripts are modified and trimmed to produce the mature RNAs. (basicmedicalkey.com)

Role and regulation of ACC deaminase gene in Sinorhizobium meliloti: is it a symbiotic, rhizospheric or endophytic gene? (unifi.it)

We hypothesized that peptides released from the surface proteins of this bacterium during digestion could be implied in this activity. (calbinotox.fr)

With the help of follow-up immunohistochemistry, chromatin immunoprecipitation-qPCR, cytokine profiling, mouse modeling, and other experiments, the team suggested that Fusobacterium infection can boost transforming growth factor beta (TGF-beta) activation, prompting quiescent fibroblast cells to become myofibroblast cells expressing a cytoplasmic microfilament-associated protein known as transgelin (TAGLN). (genomeweb.com)

It is, thus, plausible that hospital wastewaters could provide opportunities to find novel carbapenemases and other resistance genes not yet described in clinical strains. (biomedcentral.com)
about 85% of the tuf gene from two aster yellows strains and a tomato stolbur phytoplasma was sequenced. (liverpool.ac.uk)
Twenty-five lactic acid bacterial (LAB) strains have been isolated from traditional goat butter and three types of cheese (dry Klila, frech Klila, and Bouhezza) and evaluated for technological abilities, probiotic properties, and potentials as starter cultures. (calbinotox.fr)
This study offers insights into the effect of bacterial strains on a salmonid host and highlights three strains, Carnobacterium divergens V41, Pediococcus acidilactici ASG16, anti Lactiplantibacillus plantarum ISCAR-07436, for future research into growth promotion of salmonid fish through probiotic supplementation. (matis.is)
Interleukin-3 receptor genes encoded by O-islands OI-122, OI-71 and OI-57 has been shown to be highly associated with EHEC strains that were frequently involved in outbreaks and severe disease in humans [4, 16, 17, 24, 28, 29]. (micrornaassay.com)
Genes for nleG5-2 and nleG6-2 were included since OI-57 specific genes were previously found to be associated with classical EHEC and also with some EPEC strains [24, 28]. (micrornaassay.com)

micro-tom) plants infected by the stolbur phytoplasma (isolate po) display floral abnormalities, including sepal hypertrophy, virescence, phyllody, and aborted reproductive organs, which are reminiscent of those observed in arabidopsis thaliana mutants affected in flower development genes. (liverpool.ac.uk)

Multiple resistance genes are commonly arranged in the resistance cassettes. (wikipedia.org)
Resistance genes are ones that give rise to proteins that modify the antibiotic or pump it out. (wikipedia.org)
R-factors have been known to contain up to ten resistance genes. (wikipedia.org)
The size and number of drug resistance genes in each R factor varies.The RTF is bigger than the R determinant. (wikipedia.org)
they play a role in the autonomous replication, conjugation, and ampicillin resistance genes. (wikipedia.org)
RT027 isolates also showed higher MICs to clindamycin and moxifloxacin and were more likely to harbor associated resistance genes or mutations. (cdc.gov)
The lack of vanA/B genes or mutations consistently associated with elevated vancomycin MICs suggests there are multifactorial mechanisms of resistance. (cdc.gov)
The increased carbapenem resistance in isolates with acquired non-carbapenemase -lactamase genes suggests that horizontally transmitted mechanisms aside from carbapenemases themselves may be important drivers of the spread of carbapenem resistance in P. aeruginosa. (cdc.gov)

HMM accurately predicts the gene fragments belonging to specific gene classes, based on evolutionarily conserved domains [ 11 ]. (biomedcentral.com)

The involvement of RNA in such fundamental processes as protein synthesis and RNA processing has led to the idea that ribozymes were more common in early life. (printerresource.com)
These modifications are essential for their proper function in protein translation (see Chapter 13: Protein Synthesis). (printerresource.com)
RNA polymerases differ from DNA polymerases in that they can initiate the synthesis of new strands in the absence of a primer. (basicmedicalkey.com)
The transcribed region of a gene contains the template for synthesis of an RNA, which begins at the start point. (basicmedicalkey.com)
16S rRNA is involved in initiation of polypeptide synthesis. (lookformedical.com)

He identified periodic acid-Schiff (PAS)-staining granules, most likely representing degenerating bacterial forms, within macrophages isolated from the small bowel as well as other tissue and fluid specimens (eg, pericardium, endocardium, lymph nodes, synovia, lung, brain, meninges) obtained from patients in whom Whipple disease was suspected. (medscape.com)

While only 7 (0.1%) isolates harbored carbapenemase genes, 66 (6.5%) had acquired non-carbapenemase -lactamase genes, and these were more likely to have OprD dysfunction and be resistant to all carbapenems tested. (cdc.gov)

A gene is a segment of DNA that functions as a unit to generate an RNA product or, through the processes of transcription and translation, a polypeptide chain. (basicmedicalkey.com)
Assessment, transcription aspect binding web-site analysis In one more evaluation, we checked no matter whether the set our process to static information by removing the subscript referring on the time stage from Equation, of target genes containing regarded binding sites for any specific TF have been enriched among the youngster nodes of your JASPAR database. (cret-signal.com)

Working with TFMscan, we retrieved a set of genes containing the identified binding websites within their upstream regions for each TF. (cret-signal.com)

CF27-specific gene clusters which have been analyzed were expressed by both ferrous iron-grown and sulfur-attached cells, indicating that they are not pseudogenes and may play a role in both situations. (frontiersin.org)

Many cellular processes, including ribosome biogenesis, are regulated through post-transcriptional RNA modifications. (nature.com)

The pure culture of the bacterial strain was grown under aerobic conditions on tryptic soy broth agar plates. (asm.org)
protein differences between a virB mutant and its parental strain using comparative proteomic analysis (Wang et al. (a-inhibitor.com)

In this research project we try to quantify the gene expression of the above genes pilB, pslA, lecA, ureB using rpoD as the house keeping gene. (ukessays.com)
The gene expression is quantified using real time PCR. (ukessays.com)
The results from the planktonic and biofilm gene expression results are compared. (ukessays.com)
With that in mind, he and his colleagues turned to gene expression profiling, single-cell RNA sequencing, and fluorescence in situ hybridization (FISH) to assess uterus endometrial fibroblast and ovarian endometriotic lesion samples from individuals with endometriosis and samples from unaffected controls. (genomeweb.com)
Studies on the developmental onset of the teleost circadian clock have been carried out in zebrafish and, recently, in rainbow trout and Senegalese sole, where rhythms of clock gene expression entrained by light-dark (LD) cycles have been reported from the first days post fertilization. (researchgate.net)
tomato flower abnormalities induced by stolbur phytoplasma infection are associated with changes of expression of floral development genes. (liverpool.ac.uk)
and the protein expression levels of Pro-IL-1? (calbinotox.fr)

Histone deacetylase 7 is an enzyme that in humans is encoded by the HDAC7 gene. (hdacassay.com)

They did this with great success: About one third of all typical "common colds" and some cases of diarrhoea as well are caused by these RNA Viruses, which are the largest of their kind. (helmholtz-hzi.de)

The correlation between dysbiosis and IBD is not completely understood, and human studies involve confounding variables on bacterial composition, such as antibiotic use [ 10 ]. (biomedcentral.com)

Anatomy14

Organisms25

Diseases7

Chemicals and Drugs119

Analytical, Diagnostic and Therapeutic Techniques and Equipment19

Phenomena and Processes75

Technology, Industry, Agriculture1

Information Science4

Health Care5

Geographicals1

TRNA7

Species12

MRNA5

Antibiotic resistance genes6

Genomes6

Genome18

RRNA gene sequence2

Bacteria16

Genomic4

Eukaryotic3

Sequences14

TRNAs2

Microbiome4

Nucleotides2

Escherichia3

Promoters2

Mitochondrially-encoded1

Fungal2

Subunit2

Functional2

Polymerase chain re1

Phylogenetic analysis1

Virulence5

Coelicolor1

RDNA2

Abundance2

Pathogens1

Enzymes3

Metagenomics2

Interactions2

Microbiota2

Differentially2

Antibiotics1

Presence5

Plasmid6

Analyses1

Pathways1

Putative1

Structural2

Transcripts2

Regulation1

Bacterium1

Cytoplasmic1

Strains6

Mutants1

Resistance8

Predicts1

Synthesis5

Granules1

Carbapenemase1

Transcription2

Upstream1

Specific1

Processes1

Strain2

Expression7

Humans1

Viruses1

Composition1