DiseasesChemicals and DrugsAnalytical, Diagnostic and Therapeutic Techniques and EquipmentPsychiatry and PsychologyPhenomena and ProcessesDisciplines and OccupationsAnthropology, Education, Sociology and Social PhenomenaTechnology, Industry, AgricultureHumanitiesInformation ScienceNamed GroupsHealth CarePublication CharacteristicsGeographicals
AlgorithmsComputational BiologyPeriodicals as TopicJournal Impact FactorSoftwareSystems BiologySociologyPublishingSequence Analysis, ProteinComputer SimulationBibliometricsPhysiological PhenomenaJournalism, MedicalArtificial IntelligenceProteinsGenomicsPattern Recognition, AutomatedProgramming LanguagesDatabases, FactualSequence AlignmentBiologyInternetPeer Review, ResearchAuthorshipMarkov ChainsModels, BiologicalDatabases, ProteinModels, StatisticalInformation Storage and RetrievalUser-Computer InterfaceCluster AnalysisSequence Analysis, DNASystems IntegrationComputer GraphicsProtein Interaction MappingGene Expression ProfilingDatabases, GeneticModels, GeneticReproducibility of ResultsGene Regulatory NetworksBayes TheoremAbstracting and Indexing as TopicDatabases, BibliographicModels, TheoreticalOligonucleotide Array Sequence AnalysisPublicationsModels, MolecularBibliography as TopicProteomePeer ReviewBiomedical ResearchMolecular Sequence DataMolecular BiologyPhylogenyDevelopmental BiologyAmino Acid SequenceGenome, HumanLibraries, MedicalMEDLINEBooksEvolution, MolecularProtein ConformationLibrary Collection DevelopmentResearchProtein FoldingManuscripts as TopicBook SelectionLibrary SurveysAccess to InformationSynthetic BiologySignal TransductionProtein Structure, TertiaryHistory, 20th CenturyBinding SitesSensitivity and SpecificityWritingHistory, 21st CenturyConflict of InterestTranscription FactorsCopyrightBenchmarkingResearch ReportReference BooksPubMedScienceScientific MisconductImage Processing, Computer-AssistedResearch DesignInterlibrary LoansAllied Health OccupationsEvidence-Based MedicineSerial PublicationsLibraries, DigitalData Interpretation, StatisticalReview Literature as TopicImage Interpretation, Computer-AssistedQuality ControlOnline SystemsPhantoms, ImagingJournalism
PLOS ComputaBioinformatics and Computational BiologySystems BiologyGenomicsApplied MathematicsEmploying computational techniquesGenome20172016ISSNOptimization2022MolecularDatasets2018BiologicalGeneticsChemical Information and ModelingPredictiveAdaptive geneticGenetic algorithmEfficient algorithmsPredictionClassificationTheorySequenceModeling1984ParallelChemistryIntelligenceProteinGraphStatisticalPublicationMathematical modelsArticleSIAM Journal on Discrete MathematicsPAPERSPhysicsEvolutionarySimulationGeometryFind an optimalEditorial boardElsevierResearchersResearchTransactionsISMBComputationsProbabilisticGene regulato10.1371ComputerDetectionDevelopment
PLOS Computa2
  • In a study published in PLOS Computational Biology, a patient with a brain tumor underwent placement of an electrocorticographic electrode array to locate seizures and map brain function before a tumor was removed. (technologynetworks.com)
  • In a paper published today in the journal PLOS Computational Biology , they present an algorithm that uses Wikipedia traffic data to estimate the rates of diseases in the real world - and project imminent outbreaks. (vox.com)
Bioinformatics and Computational Biology2
Systems Biology5
Genomics6
  • She has a longstanding experience in developing algorithms for comparative genomics and especially genome rearrangements, gene tree reconstruction and Gene tree/Species tree reconciliation. (iscb.org)
  • Her research appears in a variety of computer science, bioinformatics and life science journals, among them IEEE/ACM, Molecular Biology and Evolution, Bioinformatics, Nature Scientific Reports and BMC-Genomics. (iscb.org)
  • Dr. Laxmi Parida is an IBM Fellow, Master Inventor and heads the Computational Genomics at the IBM Thomas J. Watson Research Center, USA. (iscb.org)
  • Her research areas include population genomics, cancer genomics, plant genomics, bioinformatics, algorithms (including AI) and topological data analysis. (iscb.org)
  • Particularly heavy attention resulted in health science and transportation, with entries such as 'Algorithms for Genomics,' 'Optimization and Radiotherapy Treatment Design,' and 'Crew Scheduling. (lu.se)
  • Oliver Stegle is the Head of the Computational Genomics and Systems Genetics Division at the German Cancer Research Center (DKFZ) and group leader at EMBL in Heidelberg, Germany. (lu.se)
Applied Mathematics2
  • Applied mathematics itself accounts for at least 60 per cent of mathematics, and the emphasis on computation reflects the current and constantly growing importance of computational methods in all areas of applications. (lu.se)
  • EACM emphasizes the strong links of applied mathematics with major areas of science, such as physics, chemistry, biology, and computer science, as well as specific fields like atmospheric ocean science. (lu.se)
Employing computational techniques1
Genome4
  • Questions from molecular biology and genome research have inspired algorithm development in computer science for many years, starting with string algorithms for (small-scale) sequence analysis, and quickly extending to methods from graph and network algorithms, combinatorial optimization, computational statistics and image analysis, to name a few. (mdpi.com)
  • New systems processing of numerous and different kinds of signals, math- must capture the specific biological mechanisms of opera- ematical and computational methods are required to model tion and distributed regulation at work within the genome. (lu.se)
  • Genome biology, 18(1), 225. (lu.se)
  • We have seen the journal evolve along with the changing landscape of health and disease, including the increasing use of genome-scale approaches in medical research and clinical practice, the generation and analysis of patient- and population-level data, and the clinical implementation of these approaches in precision medicine and public health. (cdc.gov)
20171
  • 2017/01: We are hosting Oregon's first and only University site for North American Computational Linguistics Olympiad ( NACLO )! (oregonstate.edu)
20161
  • SIAM Journal on Computing (SICOMP), 45(3): 811-858, 2016. (mit.edu)
ISSN4
  • Journal of computational biology , ISSN 1557-8666. (uni-lj.si)
  • IEEE/ACM transactions on computational biology and bioinformatics , ISSN 1545-5963. (uni-lj.si)
  • A special issue of Biology (ISSN 2079-7737). (mdpi.com)
  • BioTech (ISSN 2673-6284) is a multidisciplinary, peer-reviewed scientific journal which provides an advanced forum for investigations and discussions related to the study and application of biotechnology. (mdpi.com)
Optimization5
  • Martínez-Cagigal, Víctor and Santamaría-Vázquez, Eduardo and Hornero, Roberto, Brain-Computer Interface Channel Selection Optimization Using Meta-Heuristics and Evolutionary Algorithms (October 18, 2022). (ssrn.com)
  • Genetic algorithm (GA) or the particle swarm optimization (PSO) algorithm is usually combined with neural network and applied in fault diagnosis [ 5 - 7 ]. (hindawi.com)
  • We have recently introduced a multistep extension of the greedy algorithm for modularity optimization. (uzh.ch)
  • Finally, we will present computational tools for strain optimization leading to the microbial overproduction of target biomolecules using both stoichiometric and large-scale kinetic models. (ucsb.edu)
  • signaling networks and multi-scale modeling in cancer biology, network science, optimization theory and algorithms. (ucsb.edu)
20222
  • SIAM Journal of Computing, 51(6):1796-1838, 2022. (mit.edu)
  • SIAM Journal of Scientific Computing, 44(1): 80-, 2022. (mit.edu)
Molecular8
Datasets2
  • This situation calls for applying novel ideas from algorithm development to the datasets that each biology lab faces today. (mdpi.com)
  • The field continues to grapple with managing and analyzing everincreasing amounts of biological data, integrating diverse datasets, and developing robust computational models. (scholarsresearchlibrary.com)
20181
  • 2018/02: We released the world's fastest RNA secondary structure prediction server , powered by the first linear-time prediction algorithm , based on our earlier work in computational linguistics. (oregonstate.edu)
Biological8
  • Such studies, coupled with mature computational methods for structure prediction [23], have paved the way for a rational design of RNAs targeting a wide diversity of biological function [8, 2, 13]. (dagstuhl.de)
  • An adaptive genetic algorithm for parameter estimation of biological oscillator models to achieve target quantitative system response. (uni-lj.si)
  • By combining the power of data analysis, mathematical modeling, and advanced algorithms, computational biology enables researchers to gain insights into complex biological processes, unravel genetic mysteries, and develop innovative solutions for various medical and environmental challenges. (scholarsresearchlibrary.com)
  • The Emergence of Computational Biology With the exponential growth of biological data and advancements in computing power, computational biology has emerged as a vital discipline in life sciences. (scholarsresearchlibrary.com)
  • Computational modeling and simulation help in deciphering the complex interactions within biological systems. (scholarsresearchlibrary.com)
  • Computational biology enables researchers to process and analyze vast amounts of biological data in a fraction of the time it would take using traditional methods. (scholarsresearchlibrary.com)
  • Systems and Computational Biology Journal bridge between the basic biology and applied biology which provides new insights into understanding the complex biological systems to develop new drugs, targets, and methods for various diseases. (boffinaccess.com)
  • 1974. Biological handbooks: Biology data book. (cdc.gov)
Genetics1
  • European journal of human genetics : EJHG, 25(1), 2-7. (lu.se)
Chemical Information and Modeling1
  • Journal of Chemical Information and Modeling. (ub.edu)
Predictive3
  • The CART algorithm has been extensively applied in predictive studies, however, researchers argue that CART produces variable selection bias. (bvsalud.org)
  • Considering this problem, this article compares the CART algorithm to an unbiased algorithm (CTREE), in relation to their predictive power. (bvsalud.org)
  • Computational techniques, including predictive algorithms and mathematical models that describe a selected process (e.g., skin permeation) by means of analytical or numerical methods. (cdc.gov)
Adaptive genetic1
  • To overcome these problems, this paper proposes a fault diagnosis method based on the multiple mutation adaptive genetic algorithm-radial basis function neural network (MMAGA-RBFNN), which is suitable for oil well pumps. (hindawi.com)
Genetic algorithm1
  • The advantage of this new method is its use of a simple feature extraction method and advanced genetic algorithm to optimize the threshold and weight of the RBF neural network. (hindawi.com)
Efficient algorithms2
  • Dr. Ranjan is primarily interested in the development of efficient algorithms and bioinformatics tools for solving biologically important problems. (odu.edu)
  • Research Focus: efficient algorithms and provable theory in the above areas. (oregonstate.edu)
Prediction2
  • Ranjan, D. "ABI Innovation: Advanced Informatics and Eective Algorithms for Improved CryoEM Protein Structure Prediction and Density Analysis" $589,703. (odu.edu)
  • The CART algorithm yielded a tree with a better outcome prediction. (bvsalud.org)
Classification1
  • The Classification and Regression Trees (CART) algorithm is a traditional, popular, and well-developed approach of the Regression Tree Method (Loh, 2014). (bvsalud.org)
Theory6
  • In recent decades, Information Theory has contributed to significant advances in Computational Biology and Bioinformatics across a broad range of topics. (mdpi.com)
  • His research interests include Kolmogorov complexity and its applications, algorithms and software for bioinformatics, computational complexity, and computational learning theory. (scholarpedia.org)
  • Journal of Economic Theory (JET), 156:207--245, 2015. (mit.edu)
  • In this paper, an accurate algorithm for GISAXS simulations based on the multi-slice DWBA theory is presented. (lbl.gov)
  • I was known as a computational linguist (parsing, translation, algorithms and theory), but in recent years I became more interested in adapting my NLP algorithms to computational biology, thanks to the shared mathematical foundations between the two seemingly distant fields. (oregonstate.edu)
  • Computational group theory, in particular investigation of maximal symmetry groups of hyperbolic space using algorithmic methods. (lu.se)
Sequence2
  • Owing to the discrete nature of RNA sequence and popular structural representations (e.g. secondary structure), RNA design has inspired the contribution of a large number of diverse algorithms [9, 20, 14, 4] for the inverse folding problem, i.e. the design of an RNA sequence which preferentially and effectively folds into a predefined (secondary) structure. (dagstuhl.de)
  • It covers stencil computations, auto-tuning, optimizations of a computational kernel, sequence alignment and homology, and pairwise computations. (routledge.com)
Modeling7
  • To that end, we develop computational methods in statistics, probabilistic modeling, and bioinformatics, and work in a close collaboration with experimental labs to design and perform high-throughput experiments. (tau.ac.il)
  • By analyzing ecological data, mapping biodiversity, and modeling ecosystems, computational biologists help in conserving natural resources, managing ecosystems, and predicting the impact of climate change. (scholarsresearchlibrary.com)
  • Computational biology contributes to conservation efforts by providing tools for biodiversity monitoring, ecosystem modeling, and predicting the impact of environmental changes. (scholarsresearchlibrary.com)
  • The Nonparametric Adaptive Grid Algorithm for Pharmacokinetic Population Modeling. (usc.edu)
  • Yet they have been mostly neglected in the computational modeling of these complexes. (vu.nl)
  • Anna Gambin , Piotr Krzyżanowski i Piotr Pokarowski , Aggregation Algorithms for Perturbed Markov Chains with Applications to Networks Modeling , Siam Journal On Scientific Computing 31 (1) 2008, s. 45-73. (edu.pl)
  • To overcome this problem we develop a method that combines a computational structural modeling (which delivers atomic-resolution structures) with experimental data (which provides information about the population of different states). (lu.se)
19841
  • Nevertheless, it was only in the 1980s when researchers became interested in Regression Tree, due mainly from the technical improvements achieved by the creation of the CART algorithm (Breiman, Friedman, Olshen, & Stone, 1984). (bvsalud.org)
Parallel2
Chemistry3
  • Journal of medicinal chemistry. (ub.edu)
  • The journal of physical chemistry.B. 113(49):16028-16038. (ub.edu)
  • It is based on a fundamental understanding of natural processes and how they are affected by human activity and therefore has a broad base in traditional subjects such as biology, chemistry, physics, geology, and physical geography. (lu.se)
Intelligence2
  • Because a mathematical technique to characterize how assemblies of inputs converge in human brain regions did not exist in the scientific literature, the Mayo team collaborated with an international expert in artificial intelligence (AI) algorithms to develop a new type of algorithm called "basis profile curve identification. (technologynetworks.com)
  • Fabian is the director of the Institute of Computational Biology at the Helmholtz Center Munich and scientific director of the Helmholtz Artificial Intelligence Cooperation Unit (HelmholtzAI) which was launched in 2019. (lu.se)
Protein1
  • We test these algorithms on a large human protein-protein interaction network using somatic mutation data from glioblastoma and lung adenocarcinoma samples. (princeton.edu)
Graph1
  • Furthermore, an in-depth analysis of the communities of two real-world networks (the metabolic network of the bacterium E. coli and the graph of coappearing words in the titles of papers coauthored by Martin Karplus) provides evidence that the partition obtained by the multistep greedy algorithm is superior to the one generated by the original greedy algorithm not only with respect to modularity, but also according to objective criteria. (uzh.ch)
Statistical2
  • Statistical antecedents of CART algorithm are of historical importance since they trace back to 1960s, when the Automatic Interaction Detection (AID) algorithm was created (Morgan & Sonquist, 1963). (bvsalud.org)
  • It also includes biographical information on over 200 key figures in the field and coverage of statistical journals and societies. (lu.se)
Publication1
  • publication compete with journal publication in terms of quality and value. (bio.net)
Mathematical models1
  • The PhD programme in Theoretical Physics with specialization in Computational Biology is engaged in constructing mathematical models and theories that describe physical reality with emphasis on biology and biophysics. (lu.se)
Article3
SIAM Journal on Discrete Mathematics2
  • SIAM Journal on Discrete Mathematics, 25(2): 872-893, 2011. (mit.edu)
  • Jean-Sebastien Sereni, Łukasz Kowalik i Riste Skrekovski, Total colouring of plane graphs with maximum degree nine , Siam Journal On Discrete Mathematics 22 (4) 2008, s. 1462--1479. (edu.pl)
PAPERS5
  • papers in the journal. (bio.net)
  • Dr. Tang has published more than 120 papers in peer-reviewed conferences and journals and has been supported by grant from NSF, NIH, NEH and Naval Office of Research. (sc.edu)
  • He has published over 100 journal and conference proceedings papers in the above research areas. (journal-cand.com)
  • The editor invites all researchers to submit their articles and get published in Systems and Computational Biology Journal and accepted papers will be available online within 7 days in various file formats. (boffinaccess.com)
  • The issue starts with three pa- than one hundred journal papers, is an SPIE pers (Song et al. (lu.se)
Physics2
  • Ranjan, D. "Doctoral Student support for computational physics" $65,000. (odu.edu)
  • A doctoral dissertation in Environmental Science and Theoretical Physics commonly consists of a summarising chapter together with a collection of articles that have been published or are intended to be published in international scientific journals. (lu.se)
Evolutionary1
  • Computational approaches aid in reconstructing evolutionary relationships between species and understanding their genetic ancestry. (scholarsresearchlibrary.com)
Simulation3
  • Stochastic simulation algorithm for gene regulatory networks with multiple binding sites. (uni-lj.si)
  • Professor Tang's research interests include computational biology and bioinformatics, machine learning and big data analysis, algorithm development and high performance computing, as well as computer gaming and scientific simulation. (sc.edu)
  • In particular, fundamental properties of the Fourier transform have been utilized to develop an algorithm that accurately computes the average refractive index profile as a function of depth and the Fourier transform of the portion of the sample within a given slice, which are key quantities required for the multi-slice DWBA simulation. (lbl.gov)
Geometry2
  • In cases where the sample displays regions of significant refractive index contrast, an algorithm has been implemented to perform a slicing of the sample and compute the averaged refractive index profile to be used as the reference geometry of the unperturbed system. (lbl.gov)
  • Discrete and Computational Geometry. (uea.ac.uk)
Find an optimal1
  • Intelligent algorithm can help the model find an optimal solution [ 8 , 9 ]. (hindawi.com)
Editorial board1
  • She is on the advisory board of NYU Engineering School and editorial board of BMC Bioinformatics, Journal of Computational Biology and an Associate Editor, IEEE/ACM Transactions on Computational Biology and Bioinformatics and SIAM Journal of Discrete Mathematics. (iscb.org)
Elsevier1
  • Computational Statistics & Data Analysis/Elsevier. (usc.edu)
Researchers2
  • By employing algorithms and machine learning techniques, researchers can identify genetic variations associated with diseases, predict patient responses to treatments, and develop personalized medicine approaches. (scholarsresearchlibrary.com)
  • Systems and Computational Biology Journal is also encourages the associations among scientific communities and collaborations between individual researchers. (boffinaccess.com)
Research8
  • Editors select a small number of articles recently published in the journal that they believe will be particularly interesting to readers, or important in the respective research area. (mdpi.com)
  • The aim is to provide a snapshot of some of the most exciting work published in the various research areas of the journal. (mdpi.com)
  • Computational biology has expanded its reach beyond the laboratory, contributing to environmental and ecological research. (scholarsresearchlibrary.com)
  • Abhinav Sarje is a research scientist in the Performance and Algorithms Research group of the Computer Science department at the Berkeley Lab. (lbl.gov)
  • A few different research groups have tried to figure out why this is the case, but they're run up against a big problem: Google's search algorithm is proprietary and private, and the company only releases a small subset of the queries used in the model. (vox.com)
  • He is also the Editor-in-Chief of the International Journal of Research in Industrial Engineering. (journal-cand.com)
  • Systems and Computational Biology Journal connects various research groups around the globe through its open discussion forums. (boffinaccess.com)
  • The journal was launched to meet the need in the community for a platform to publish impactful and open science that advances basic and clinical research—using genetic, genomic, omic, and systems approaches—that has the potential to revolutionize the practice of medicine. (cdc.gov)
Transactions2
ISMB1
  • She is involved, each year, in the program committee of some of the most popular conferences in computational biology such as RECOMB, ISMB, WABI and APBC. (iscb.org)
Computations1
  • Ranjan, D. "Algorithms and Software Development for QCD computations on Xeon-Phi Architecture. (odu.edu)
Probabilistic1
  • Because of the importance of isolating functionally coordinated interactions, a lot of models, algorithms and strategies have been introduced to extract interesting PPI subnetwork (soft-clustering, greedy heuristics, probabilistic approaches, etc.), but each of them has proper pros and cons. (biomedcentral.com)
Gene regulato1
10.13711
Computer3
  • Computational biology, an interdisciplinary field at the intersection of biology and computer science, has revolutionized the way we study and understand living organisms. (scholarsresearchlibrary.com)
  • He is an associate editor-in-Chief of Journal of Computer Science and Technology. (scholarpedia.org)
  • Syndromic surveillance can be undertaken by detecting symptoms disclosed by individuals on social media for non-public health purposes by either human readers or computer algorithm, 4 or through participatory epidemiology where applications allow participants to self-report their symptoms to disease-specific digital surveillance systems. (who.int)
Detection1
  • 2010. Large-Scale Comparison of Four Binding Site Detection Algorithms . (ub.edu)
Development1
  • Development of pathogenicity predictors specific for variants that do not comply with clinical guidelines for the use of computational evidence. (lu.se)