Initiative genome plant. Medical search. Frequent questions

Within species, genomes vary in both gene content (e.g., tandem duplicated genes, CNVs dispersed throughout the genome, and PAVs of genes) and repetitive portions of the genome (e.g., transposable elements, knob repeats, centromere repeats). (biomedcentral.com)
Each RBH couple consists of two genes, one from each of the two genome sequences (or genomes) to compare, which display the highest scoring hit in the other data set in a reciprocal manner [ 36 ]. (biomedcentral.com)
Researchers can find information for single genes or they can download data (sequences, descriptions, GO annotations) for sets of genes or even the whole genome. (biologists.com)
Genome-wide expression of low temperature response genes in Rosa hybrida L.. Plant Physiology and Biochemistry. (usda.gov)
Genome-wide identification and expression analysis of the bZIP transcription factor family genes in response to abiotic stress in Nicotiana tabacum L. (biomedcentral.com)
they can combine with the promoter regions of key genes in signaling pathways to regulate their transcription levels and, in turn, plant resistance to stress. (biomedcentral.com)
The gibberellic acid-stimulated Arabidopsis ( GASA ) family genes play critical roles in plant growth, development, and stress responses. (biomedcentral.com)
Furthermore, genome analysis of this strain suggested the presence of gene clusters involved in iron acquisition ( fhuABD , afuABC , fbpABC , and fepCDG ) and phosphate solubilization ( pstABCHS , phoABHLU , and phnCDEP ) and other phytohormone biosynthesis genes, including indole-3-acetic acid ( trpABCDEFG ), in the genome. (springeropen.com)
The objective of the GENOAK project are to establish a high quality reference genome sequence for Quercus robur, and to identify genes involved in adaptation through the analysis of adaptive divergence (incipient ecological speciation) at the transcriptome and genome-wide levels. (inrae.fr)
In a broad sense, a genome can be considered as the collective set of genes, non-coding DNA sequences, and all their variants that are located within the chromosomes of members of a given species. (science20.com)
The genome sequence and annotation of L. minor protein-coding genes provide new insights in biological understanding and biomass production applications of Lemna species. (biomedcentral.com)
An examination revealed the presence of two serpin genes, each coding for two or three likely alternative reactive centre exon cassettes, respectively, also in the Caenorhabditis elegans genome, The occurrence of such serpin genes in some groups of metazoa reflects a parsimonious way to enlarge the adaptive ability of these organisms to cope with a plethora of different serine and cysteine proteases. (uni-bielefeld.de)
In this study, 2133 CaM and 23094 CML genes were identified from the 1000 plants project (1 KP) species and the sequenced plants, covering algae, mosses, monilophytes, lycophytes, flowering plants, and all other green plant branches. (bvsalud.org)
Moreover, with the evolution from algae to angiosperms, the number of CML genes in plants increased gradually which could have been driven mainly by genome-wide segmental duplication events, while the number of CaMs remained basically stable at 2-3. (bvsalud.org)
Expression analysis revealed that the expression level of CaMs was generally higher than that of CMLs, indicating that the high-expression genes have essential functions, while the low-expression genes are the main reasons for the functional diversity of the CaM/CML gene family in plants. (bvsalud.org)

However, one of the major developments from the wheat sequencing effort, presented by Jane Rogers from The Genome Analysis Centre, Norwich, is the release of the wheat chromosome survey sequences on the IWGSC website. (bspp.org.uk)
Due to their complexity, the plants' genome sequences can't be assembled back into chromosomes using only short reads provided by next-generation- sequencing technologies (NGS), and therefore most plant genome assemblies available that used NGS alone are highly fragmented, contain large numbers of contigs, and genome regions are not finished. (wikipedia.org)
Highly repetitive sequences, often larger than 10kbp, are the main challenge in plants. (wikipedia.org)
Most of the chromosomal sequences are produced by the activity of mobile genetic elements (MGEs) in the plant genomes. (wikipedia.org)
It mainly provides genome sequences, gene models, functional annotations and polymorphic loci. (wikipedia.org)
Phylogenetic studies based on rDNA and on whole mitochondrial genome sequences indicate that the chytrids are basal in the fungal clade (3,7). (broadinstitute.org)
Little wonder, then, that discussions about genome sequences and comparisons thereof can leave otherwise interested audiences more frustrated than enlightened. (science20.com)
Thus, even though humans and chimpanzees are about 98% identical in terms of their DNA sequences, there is still such as thing as a 'human genome' and a 'chimpanzee genome' rather than a continuum with humans and chimps at two mildly divergent extremes. (science20.com)
Because the DNA sequences of even close family members are not identical, it can also be said that each individual carries a unique genome consisting of the DNA in his or her chromosomes. (science20.com)
Two independent research groups reported draft sequences of the human genome in February 2001: the publicly-funded and internationally collaborative Human Genome Project and the private company headed by J. Craig Venter known as Celera Genomics . (science20.com)
The genome sequences reported here will be used for comparative genomics and to better understand the etiology, relationships and evolution among the spiroplasmas. (biomedcentral.com)

The International Wheat Genome Sequencing Consortium (IWGSC) was created in 2005 by a group of wheat growers, plant scientists, and public and private breeders to change this paradigm. (inrae.fr)

Committee on the National Plant Genome Initiative. (koeltz.com)

A 2023 US study has investigated whether panel testing or whole genome sequencing is more rigorous for providing a molecular diagnosis. (cdc.gov)

The Arabidopsis thaliana Niederzenz-1 genome sequence was recently published with an ab initio gene prediction. (biomedcentral.com)
The improved gene set of the Nd-1 genome assembly (GeneSet_Nd-1_v1.1) was evaluated via comparison to the initial gene prediction (GeneSet_Nd-1_v1.0) as well as against Araport11 for the Col-0 reference genome sequence. (biomedcentral.com)
To correlate and compare gene structures from related genomes, the first step is to define "orthologous" gene couples. (biomedcentral.com)
Is there a rule for the annotation of the basepair or gene locus origin in bacterial genomes? (stackexchange.com)
New articles, gene symbols and full names, gene summaries, Gene Ontology (GO) and Plant Ontology (PO) annotations, germplasms and phenotypes based on those articles are added by data curation scientists to a subset of loci on a weekly basis. (biologists.com)
The GASA/GAST gene family is found in a variety of plant species and includes a signal peptide at the N-terminus and a conserved domain with 12 cysteine residues known as the GASA domain (PF02704) at the C-terminus, [ 1 ]. (biomedcentral.com)
At the forefront of the emerging area of genomic science since its inception in 1992, TIGR continues its mission of conducting pioneering research in structural, functional and comparative analysis of genomes and gene products in bacteria (pathogenic or disease causing and environmental) archaea and eukaryotes, both plant and animal. (jcvi.org)
The oxalate oxidase gene is also being tested by several other researchers to enhance pathogen tolerance in plant systems such as peanut , soybean , sunflower , and oilseed rape and also to possibly increase salt tolerance in tomato . (esf.edu)
However, the origin and evolution of the CaM/CML gene family in plants remain elusive. (bvsalud.org)
Analysis showed that the size of the CML subfamily was correlated with the genome size of corresponding plant species, as well as the total gene number in the genome. (bvsalud.org)

Since non-canonical splice sites are difficult to predict ab initio, we checked for options to improve the annotation by transferring annotation information from the recently released Columbia-0 reference genome sequence annotation Araport11. (biomedcentral.com)

One of the most complex plant genome assemblies available is that of loblolly pine (22 Gbp). (wikipedia.org)
RNA-Seq data ("external hints") does not support the detection and annotation of non-canonical splice sites on genome sequence assemblies at a satisfying level [ 26 , 27 , 28 ]. (biomedcentral.com)
ERGA seeks to increase coordination across all countries of the European continent, in tandem with international partners, to generate reference-quality, complete and error-free genome assemblies for at least 200,000 plant and animal species - across Europe. (forextv.com)

A plant genome assembly represents the complete genomic sequence of a plant species, which is assembled into chromosomes and other organelles by using DNA (deoxyribonucleic acid) fragments that are obtained from different types of sequencing technology. (wikipedia.org)
to very large and complex genomes that have typically much higher ploidy, higher rates of heterozygosity and repetitive elements than species from other kingdoms. (wikipedia.org)
EnsemblPlants is part of EnsemblGenome database and contains resources for a reduced number of sequenced plant species (45, Oct. 2017). (wikipedia.org)
For some of the plant species, additional information is provided including population structure, individual genotypes, linkage, and phenotype data. (wikipedia.org)
Our combined approach of spatial transcriptomics and functional profiling offers a powerful new strategy that can be applied to a broad range of plant species, and is an approach that will be pivotal to answering fundamental questions in developmental and evolutionary biology. (nature.com)
The study of specialized tissue domains and their interactions is essential for a comprehensive understanding of the function of biological systems, including the wide variety of plant species. (nature.com)
Moreover, FACS in plants requires the formation of protoplasts, which in certain species can be difficult to produce. (nature.com)
The study of structural variation within species and the characterization of the pan-genome has revealed extensive genome content variation among individuals within a species that is paradigm shifting to crop genomics and improvement. (biomedcentral.com)
Here, we review advances in crop genomics and how utilization of these tools is shifting in light of pan-genomes that are becoming available for many crop species. (biomedcentral.com)
The ability to produce crops that meet societal needs is enhanced by a thorough understanding of the genome of a species. (biomedcentral.com)
Recent innovations are driving a paradigm shift in which the extent and relevance of structural variation within the pan-genome of crop species are now being considered. (biomedcentral.com)
In characterizing this variation, the genomic fraction common to all individuals within a species has been termed the "core" genome and the variable fraction the "dispensable" genome. (biomedcentral.com)
Macrophomina phaseolina is one of the most destructive necrotrophic fungal pathogens that infect more than 500 plant species throughout the world. (biomedcentral.com)
To overcome the host plant defense response, M. phaseolina encodes a significant number of P450s, MFS type membrane transporters, glycosidases, transposases, and secondary metabolites in comparison to all sequenced ascomycete species. (biomedcentral.com)
In addition to breeding crops that will flourish in Alabama, Clevenger's lab also aims to introduce favorable qualities from wild species of crop plants-such as disease and pest resistance-into high-yielding cultivated crops to produce high-yield crops that require the use of fewer pesticides and fungicides. (hudsonalpha.org)
Because Clevenger's passion and expertise are in peanut breeding and genomics, his team's initial focus is incorporating traits from wild species of peanut into cultivated peanut plants that are already widely used. (hudsonalpha.org)
By breeding a high-yield peanut plant with a plant that has disease resistance, Clevenger's lab chooses the disease resistance trait from the wild species in the high-yield cultivated peanut plant. (hudsonalpha.org)
Is There An Initiative To Sequence The Genomes Of Critically Endangered Species? (stackexchange.com)
I realize that there are many isolated efforts to sequence the genome of a particular endangered species such as the orangutan or the snow leopard. (stackexchange.com)
However is there a concerted effort to sequence the genomes of every species on the brink of extinction? (stackexchange.com)
So, not their genomes as such but the species themselves. (stackexchange.com)
What species have had their genomes sequenced/are being sequenced? (stackexchange.com)
Where I can download the genome sequence of various species of Fusarium? (stackexchange.com)
MENLO PARK, Calif., Sept. 27, 2021 (GLOBE NEWSWIRE) - Pacific Biosciences of California, Inc. (Nasdaq: PACB)("Pacific Biosciences" or "PacBio"), a leading provider of high-quality, highly accurate sequencing platforms, today announced a partnership with The European Reference Genome Atlas (ERGA) consortium to support its efforts in understanding and protecting biodiversity by generating high-quality reference genomes for European plant and animal species. (forextv.com)
PacBio's HiFi Sequencing technology allows scientists to take the first important step by reliably generating high-quality genetic maps of each plant and animal species. (forextv.com)
Studies have shown that reference-quality genomes provide the most complete insight into the genetic basis that forms each species 2 . (forextv.com)
Each plant and animal species has a unique genome and they range in complexity. (forextv.com)
With accurate reference genomes, scientists can gain the most complete insight into a species' genetic basis to understand its evolutionary history and also predict its future adaptation potential," said Camila Mazzoni, Chair, ERGA, Research Group Leader at Leibniz Institute for Zoo and Wildlife Research. (forextv.com)
Thai herbal medicine industry imports 3.6 billion THB worth of raw ingredients, despite having more than 800 different herbal plant species found in Thailand. (nstda.or.th)
The Smithsonian's Global Genome Initiative aims to have samples from every plant species on the planet, so scientists can learn about them and use them to solve human and environmental problems. (kbia.org)
Carlsen-Krause, who is prioritizing plants that are threatened and endangered, said saving samples is important in case the species become extinct. (kbia.org)
Duckweed species comprise a group of aquatic monocotyledons macrophytes consisting of floating plant bodies or "fronds. (biomedcentral.com)
Recent work on duckweed species was highlighted in a special issue in Plant Biology to commemorate Dr. Elias Landolt and his contribution to modern duckweed research [ 12 - 14 ]. (biomedcentral.com)
Besides, their variety in growth habitats and their sensitivity to toxicants allowed the use of Lemna species in ecotoxicological research as representative of higher aquatic plants and standardized guidelines on how to perform a growth inhibition test were developed [ 19 - 26 ]. (biomedcentral.com)

The first complete plant genome assembly, that of Arabidopsis thaliana, was finished in 2000, being the third multicellular eukaryotic genome published after C. elegans and D. melanogaster. (wikipedia.org)
Arabidopsis, unlike other plants' genomes (e.g. (wikipedia.org)
The genome was sequenced and annotated by the Arabidopsis Genome Initiative (AGI). (wikipedia.org)
The Arabidopsis Information Resource (TAIR) was established in 1999 with US National Science Foundation funding and the goal of creating a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana . (biologists.com)
Arabidopsis was the first plant genome to be sequenced (1). (biologists.com)
It will be interesting to see whether these nodule-specific TCs are present in non-nodulating plants such as Arabidopsis thaliana , and in agronomically important crops such as rice, wheat and maize. (biomedcentral.com)

Despite the significant efforts in wheat sequencing, due the extreme size and complexity of the hexaploid wheat genome there is still a long way to go until we have an assembled and annotated wheat genome sequence, as is available in grasses such as rice and Brachypodium. (bspp.org.uk)

Nevertheless, complete genome sequencing, though conducted primarily under definition #1, has revealed two major sources of variation among individuals. (science20.com)
Additional putative genotypes have been identifi ed through analysis of an 130-nt fragment of the To explore the genetic diversity of avian hepatitis E virus helicase domain, suggesting that diversity within aHEV is strains, we characterized the near-complete genome of a higher than recognized ( 11 ). (cdc.gov)

Genomics Thailand Initiative was launched in 2019. (nstda.or.th)

Plan for establishing Plant Factory Facility and High-throughput Plant Phenomics Facility - for studying plant's response to environmental conditions which is key to success to shorten plant breeding cycle - at the Eastern Economic Corridor of Innovation (EECi) has been put in place and expected to complete with EECi Phase 1 in 2021. (nstda.or.th)

some detailing progress on the collaborative wheat genome sequencing effort, some presenting genome level analyses based on the data generated as part of this consortium, and others (like myself) presenting how they are using the genomic tools rapidly being developed in the Triticeae to map and understand traits of interest. (bspp.org.uk)
The initiative for sequencing the genome of rice (Oryza sativa), began in September 1997, when scientists from many nations agreed to an international collaboration to sequence the rice genome, forming "The International Rice Genome Sequencing Project" (IRGSP). (wikipedia.org)
In general, for sequencing and assembling large and complex genomes like plants, different strategies are used, based on the technologies available at that time when the project started. (wikipedia.org)
We incorporated a genotyping-by-sequencing approach, a common garden experiment that had two water level treatments, and public plant and climate databases. (osti.gov)
PLAZA is an access point for plant comparative genomics centralizing genomic data produced by different genome sequencing initiatives. (ugent.be)
Since HiFi Sequencing reads are both large and accurate, scientists can easily assemble, phase, and analyze genomes with confidence. (forextv.com)
Today, the company's innovative instruments are based on Single Molecule, Real-Time (SMRT®) Sequencing technology, which delivers a comprehensive view of genomes, transcriptomes, and epigenomes, enabling access to the full spectrum of genetic variation in any organism. (forextv.com)
Cited in thousands of peer-reviewed publications, PacBio® sequencing systems are in use by scientists around the world to drive discovery in human biomedical research, plant and animal sciences, and microbiology. (forextv.com)
The Batrachochytrium dendrobatidis sequencing project is part of the Broad Institute Fungal Genome Initiative. (broadinstitute.org)
An initiative launched in 1997, exactly 10 years ago, it obtained its first international acknowledgement by means of the publication of an article on the cover of the journal Nature about the sequencing of the genetic code of the bacterium Xylella fastidiosa , which causes citrus variegated chlorosis, and attacks orange plantations (v. 406, n. 6.792, 13 July 2000). (fapesp.br)
The article, which described the first complete sequencing of DNA of a plant pathogen, was the work of a São Paulo network of 192 researchers supported by FAPESP. (fapesp.br)
Fernando identified the scientific opportunity, sequencing a genome, while Perez identified the ways and means - a virtual institute or network of researchers. (fapesp.br)
There were those who argued that the objective of the program (sequencing genomes) was work for computers, not for researchers. (fapesp.br)
This initiative will take sequencing of the human genome into a new realm. (jcvi.org)
providing sequencing data suitable to addressing challenging and outstanding problems in plant systematics. (frontiersin.org)
In recent years, the increase of data production has been particularly dramatic in genomics and related research fields, specifically in the area of genome sequencing. (newswire.ca)
Plant sequencing requires quality genome resources and varied competences in order to manage and diffuse reliable resources, define physical maps, carry out sequencing and undertake bio-informatic analysis. (inrae.fr)
Sequencing the wheat genome has long been considered an insurmountable challenge, due to the high complexity of the wheat genome. (inrae.fr)
But improving average wheat yields has become a major objective with genome sequencing as its prerequisite. (inrae.fr)
The CNRGV is the partner of the genome sequencing project involving Canada, USA and France. (inrae.fr)
DOE JGI in Walnut Creek, California, provides state-of-the-science capabilities for genome sequencing and analysis. (ornl.gov)
With more than 1100 worldwide collaborators on active projects, JGI is the preeminent facility for sequencing plants, microbes, and microbial communities that are foundational to energy and environmental research. (ornl.gov)
The actual ordering and sequencing involves the coordinated processing of some 3 billion bases from a reference human genome. (ornl.gov)
5 ) reported outbreaks of designed for our primer walking sequencing strategy on aHEV infection and increased deaths of chickens caused the basis of aHEV genome sequence data (Table). (cdc.gov)
From the abstract: 'Genome sequencing (GS) is one of the most comprehensive assays that interrogate single nucleotide variants, copy number variants, mitochondrial variants, repeat expansions, and structural variants in one assay. (cdc.gov)
Genomic tests (such as those based on whole-exome or whole-genome sequencing) generate an enormous amount of highly complex data, which requires professionals with specialized bioinformatic skills and the know-how to operate within clinically accredited frameworks. (cdc.gov)
Through whole-genome sequencing of single molecules of circulating cell-free DNA, we found that tumor-derived mutations in cancer genomes are associated with regions of late replication timing and other chromatin features. (cdc.gov)

Genome Insider: A Shrubbier Version of Rubber Hear from the consortium working on understanding the guayule plant's genome, which could lead to an improved natural rubber plant. (doe.gov)
The consortium of 35 universities and research institutes is part of a major initiative, which will establish 11 four-year Programs for Genomic Applications (PGAs) nationwide. (jcvi.org)
The second initiative is a $6.7 million program established by Malaysia Biotechnology at the California Institute for Quantitative Biomedical Research (QB3), which is a consortium of the University of California San Francisco (UCSF), UC Berkeley, UC Santa Cruz, and biotech companies. (genengnews.com)
The consortium has established a high-quality reference for the sunflower genome (3.6 Gb). (inrae.fr)

Since then, over twenty years of research have continually improved the sequence and functional annotation of a genome that serves as a reference for an ever-increasing number of newly sequenced plant genomes (2). (biologists.com)

Clevenger earned a PhD from University of Georgia's Institute for Plant Breeding, Genetics, & Genomics in 2016, a MS in Horticulture and Crop Science from the Ohio State University, and a BS in Biology and Philosophy from Baldwin-Wallace University. (hudsonalpha.org)
TAIR was created at the Department of Plant Biology of the Carnegie Institute for Science and the National Center for Genome Resources (NCGR) and supported by the NSF from 1999 to 2013. (biologists.com)
The investments are being made through Genome Canada's 2015 Bioinformatics and Computational Biology Competition, a partnership with the Canadian Institutes of Health Research. (newswire.ca)
Bioinformatics and Computational Biology is a priority area for Genome Canada given the growing need for enhanced tools and methodologies to make sense of the huge and growing influx of data stemming from genomics research. (newswire.ca)

less thanbrgreater than less thanbrgreater thanResults: Wide-scale analyses were performed on ten plant genomes. (diva-portal.org)
The combination of hidden Markov model (HMM) based analyses and similarity searches led to the construction of an exhaustive inventory of plant SDR. (diva-portal.org)
less thanbrgreater than less thanbrgreater thanConclusion: The application of HMMs to plant genomes enabled us to identify 49 families that encompass all Angiosperms (higher plants) SDRs, each family being sufficiently conserved to enable simpler analyses based only on overall sequence similarity. (diva-portal.org)
It integrates plant sequence data and comparative genomics methods and provides an online platform to perform evolutionary analyses and data mining within the green plant lineage ( Viridiplantae ). (ugent.be)
These genome-wide analyses identified altered regional mutation profiles in people with cancer that distinguished them from people without cancer and reflected tumor burden during therapy. (cdc.gov)

A first draft genome of the Sugarcane borer, Diatraea saccharalis. (usda.gov)

This information has been made publically available throughout the project and is already being heavily utilised by plant breeders and researchers alike. (bspp.org.uk)
It was also very interesting to meet a number of plant breeders and researchers from the USA, and to hear their perspectives on agriculture and plant breeding . (bspp.org.uk)
Genome Insider: Methane Makers in Yosemite's Lakes Meet researchers who sampled the microbial communities living in the mountaintop lakes of the Sierra Nevada mountains to see how climate change affects freshwater ecosystems, and how those ecosystems work. (doe.gov)
But with two projects, communities are forming to generate high quality genomes to benefit researchers. (doe.gov)
What was also innovative, even though it no longer seems so strange, was placing a set of researchers at the service of a risky undertaking: there was no assurance, as is common in cutting-edge fields, that the FAPESP Genome program would generate significant results. (fapesp.br)
It facilitated communication among genome researchers and informed persons interested in genome research. (ornl.gov)
Researchers from Aarhus University achieved breakthrough insights about the coupling process that allows active sugar transport in plants aided by MAX IV's BioMAX beamline. (lu.se)

Endophytes can facilitate the improvement of plant growth and health in agriculturally important crops, yet their genomes and secondary metabolites remain largely unexplored. (springeropen.com)
Interestingly, the secondary metabolites cerecidin, carotenoid, siderophore (staphylobactin), and bacillaene underlying plant growth promotion were found in the whole genome via antiSMASH analysis. (springeropen.com)
The perennial legume Mimosa pudica fits in that category as it is a recalcitrant plant producing high amounts of secondary metabolites and polysaccharides. (inrae.fr)

Gramene is an online web database resource for plant comparative genomics and pathway analysis based on Ensembl technology. (wikipedia.org)
PlantsDB is a resource for analysing and storing genetic and genomic information from various plants, and offers tools to query these data and to perform comparative analysis with the help of in-house tools. (wikipedia.org)
PLAZA is another online resource for comparative genomics that integrates plant sequence data and comparative genomic methods, and performs evolutionary analysis within the green plant lineage (Viridiplantae). (wikipedia.org)
Silver Age of GOLD Introduces New Features The Genomes OnLine Database makes curated microbiome metadata that follows community standards freely available and enables large-scale comparative genomics analysis initiatives. (doe.gov)
This basal position increases the value of a whole genome sequence for comparative genomics within the fungal clade and also with the sister animal clade. (broadinstitute.org)

The genome of plants can vary in their structure and complexity from small genomes like green algae (15 Mbp). (wikipedia.org)
This domain is an ancient motif that emerged before the establishment of the Viridiplantae-the green plants, consisting of green algae and land plants. (bvsalud.org)
Here, we contextualize attributes according to Viridiplantae evolutionary relationships, starting with orthologous protein families, and then focusing on key elements with marked differentiation, resulting in patchy distributions across green algae and plants. (bvsalud.org)

The whole genome sequence of five strains of S. citri are described herein. (biomedcentral.com)

From the depths of ocean dead zones, to wide swaths of forests, and rising up to the troposphere, where most weather changes occur, the U.S. Department of Energy Joint Genome Institute (DOE JGI) 2014 Community Science Program portfolio seeks to parse functional information extracted from complex ecosystems to address urgent energy and environmental challenges. (doe.gov)

These initiatives are dedicated to preserving, monitoring and cataloging biodiversity with actionable and accurate genomic data. (forextv.com)
The DOE Genomic Science Program uses microbial and plant genomic data, high-throughput analytical technologies, and modeling and simulation to develop a predictive understanding of biological systems behavior relevant to solving energy and environmental challenges including bioenergy production, environmental remediation, and climate stabilization. (ornl.gov)

This partnership expands PacBio's continued support for worldwide and regional consortiums, including the Darwin Tree of Life and Aquatic Symbiosis Genomics initiatives with the Wellcome Sanger Institute, the Vertebrate Genomes Project, the Earth BioGenome Project and the California Conservation Genomics Project. (forextv.com)

What is the advantage of circular genomes for bacteria and linear genomes for other organisms? (stackexchange.com)
Leguminous plants interacting with symbiotic nitrogen-fixing bacteria (for example, the plant Medicago truncatula with the bacterium Sinorhizobium meliloti ) develop new organs, called nodules, on their roots. (biomedcentral.com)
These nodules contain differentiated bacteria (bacteroids) that fix atmospheric nitrogen into ammonium, which is subsequently provided to the host plant, a process known as symbiotic nitrogen fixation. (biomedcentral.com)
Plant-associated bacteria ubiquitously inhabit the rhizosphere (soil-root interface), phyllosphere (aerial surfaces), and endosphere (inside of the plant tissues). (springeropen.com)
These bacteria may contribute to plant growth and health by assisting in nutrient uptake or by suppressing plant pathogens (Vejan et al. (springeropen.com)
2016 ). Indirect mechanisms promote plant growth through the inhibition of phytopathogens, for example, via inhibition of soil-borne fungi, bacteria, and nematodes through the production of antimicrobial metabolites or siderophores (Fu et al. (springeropen.com)

Clevenger's hope is to bridge the gap between science and nature by more rapidly deploying these beneficial traits into cultivated crops farmers can plant on their land. (hudsonalpha.org)
BioConsortia demonstrated rapid advancements in microbial product and pipeline developments for reducing nitrogen fertilizers, controlling soil pests and plant diseases for larger and better-quality crop yields, as well as protecting crops post-harvest to avoid food waste, while minimizing environmental impa. (biotechnology.report)

The Human Genome Project, being a public effort, had an official policy of releasing all sequence data to public databases within 24 hours of completion, thereby making the information freely available to anyone who carried a copy of the 'human genome' in their cells. (science20.com)

Genome Biol 3 , reports0065 (2002). (biomedcentral.com)

The FACS and INTACT methods require plant transgenic lines respectively expressing fluorescent proteins or the biotinylated nuclear envelope protein in the cell type of interest. (nature.com)
Yet, some SDR families - tropinone reductase-like proteins (SDR65C), ABA2-like-NAD dehydrogenase (SDR110C), salutaridine/menthone-reductase-like proteins (SDR114C), dihydroflavonol 4-reductase-like proteins (SDR108E) and isoflavone-reductase-like (SDR460A) proteins - have undergone significant functional diversification within vascular plants since they diverged from Bryophytes. (diva-portal.org)
Using genome-wide analysis, 20 GASA s were identified in lettuce including, three groups of LsGASA proteins based on the phylogenetic analysis. (biomedcentral.com)
Comparison of proteins from other monocot plants, protein ortholog identification, OrthoMCL, suggests 1356 duckweed-specific groups (3367 proteins, 15.0 % total L. minor proteins) and 795 Lemna -specific groups (2897 proteins, 12.9 % total L. minor proteins). (biomedcentral.com)
Calmodulin (CaM) and calmodulin-like (CML) proteins are crucial Ca2+ sensors, which are widely involved in different biological processes of plants, including their growth and development, and stress responses. (bvsalud.org)
Consistent with related but diversified roles of the RWP-RK proteins in these organisms, the RWP-RK protein family appears to have expanded intensively, but independently, in the algal and land plant lineages. (bvsalud.org)
Genome-level data allow identification of conserved proteins and protein families with extensive modifications, losses, or gains and expansion patterns that connect to niche specialization and diversification. (bvsalud.org)

Here we present the first available approach to generate and study high-resolution, spatially resolved functional profiles in a broad range of model plant systems. (nature.com)
We're excited to welcome PacBio to the ERGA initiative and look forward to our coordinated effort to generate complete reference genomes for all European biodiversity, which will accelerate conservation initiatives and advance biodiversity genomics innovation. (forextv.com)

The genome encodes 3 open reading coding sequence (1,515 aa) with a missing 17-aa region frames (ORFs). (cdc.gov)

The goal of the IWGSC is to make a high quality genome sequence of the bread wheat cv. (inrae.fr)

The genome has five chromosomes reflecting approximately 4% of the human genome size. (wikipedia.org)
And indeed, no one would ever mistake a chimpanzee genome for a human genome, in part because they differ in DNA amount and chromosome number (human chromosome 2 is a product of fusion of what remain as two separate chromosomes in other great apes). (science20.com)

They'll be preserved at the Smithsonian Institute, where scientists are collecting plants from around the world. (kbia.org)
Scientists are discovering new plants across the globe, but about one out of five plants are at risk of becoming extinct, due to climate change, human development and other threats to the environment. (kbia.org)

Genomics Thailand is a collaborative human genome research network to enable precision medicine - advancing the genomic-based testing/screening program for clinical and public health implications in Thailand. (nstda.or.th)

Further understanding of the M. phaseolina genome-based plant-pathogen interactions will be instrumental in designing rational strategies for disease control, essential to ensuring global agricultural crop production and security. (biomedcentral.com)

Second Genome is at the cutting edge of microbiome science, translating breakthrough research into medicines and other novel products that help humanity. (biotechnology.report)

Warnow has had several leadership roles in international consortia, including Genome 10K, the Avian Phylogenomics Project and the Thousand Plant Transcriptome Initiative. (illinois.edu)

TAIR provides data search and browsing services, data analysis tools, and data visualization tools, such as genome browsers (e.g. (biologists.com)
The analysis of human genomes will provide the basic knowledge necessary to diagnose, understand and cure many diseases with associated impacts on health care. (newswire.ca)
Overall, physiological testing and genome analysis data provide comprehensive insights into plant growth-promoting mechanisms, suggesting the relevance of strain ATSA2 T in agricultural biotechnology. (springeropen.com)
As part of an Andelyn Biosciences initiative to create a Connected Plant that harmonizes data from building and facilities, process and manufacturing, and lab instrument sources, TDP will enable better compliance, easier analysis, faster decisions, and more agile operations. (biotechnology.report)
Further analysis showed that the number and sequence of EF-hand domain in CaMs are highly conserved, while those of CMLs are diverse among different plant taxa. (bvsalud.org)

Plant oils like rapeseed and sunflower oil, exotic oils such as coconut oil and shea butter, and microbial single cell oils have been suggested as potential replacements. (nature.com)
3 BAC libraries will be constructed using 3 different enzymes (HindIII, EcoRI, and BamHI) in order to reach a 12 to 14 x coverage of the sunflower genome. (inrae.fr)

However, functional annotations of plant SDRs remain scarce. (diva-portal.org)
This research has great significance for the functional characterisation of the tobacco bZIP family and our understanding of the bZIP family in higher plants. (biomedcentral.com)

PGAs will utilize and expand upon the data and technologies currently developed to map and sequence the human genome to advance genomic research specifically related to heart, lung, blood, and sleep disorders. (jcvi.org)
In life sciences research, data is generated from a variety of sources, including biological research, data-intensive technologies such as quantitative imaging, environmental biodiversity studies, large population cohorts, plant and livestock breeding programs, multi-national clinical trials and e-health initiatives. (newswire.ca)

Our primary objective was the strain detected in 2010 in Hungary, uncovering moderate genetic characterization of an aHEV strain from the 2010 genome sequence similarity with reference strains. (cdc.gov)

The Missouri Botanical Garden has one of the world's largest collections of plants, which makes it a valuable resource for the Smithsonian's project, garden researcher Mónica Carlsen-Krause said. (kbia.org)
The goal of this project is to get a concise picture of the capacity of a complete complex microbial community in a wastewater treatment plant (WWTP) to exchange genetic material via plasmids (i.e., the plasmid mobilome) and to understand the variability of the mobilome as a function of WWTP operation. (doe.gov)

However, the reciprocal influences of variation in environmental conditions and phenotypic trait expression in spreading plant populations are not clearly defined. (osti.gov)
Fig. 1 ) were discovered, with the first two classes contributing to the variation in genome content. (biomedcentral.com)
Our way of thinking about crop genomics is changing as we gain a deeper understanding of the structural variation within the pan-genome. (biomedcentral.com)
The structural variation that has been uncovered in the pan-genome era necessitates a reevaluation of the determinants of phenotype. (biomedcentral.com)
Patterns of genome-wide variation, population differentiation and SNP discovery of the red banded stink bug (Piezodorus guildinii). (usda.gov)

It is estimated that there are some 3 million SNPs in the human genome (definition #1), with one occurring about every 100-300 base pairs along the more than 3 billion base pair sequence. (science20.com)
On behalf of the Health and Environmental Research Advisory Committee (HERAC), I am pleased to submit to you the enclosed Report on the Human Genome Initiative. (ornl.gov)
The report urges DOE and the Nation to commit to a large, multi-year, multidisciplinary, technological undertaking to order and sequence the human genome. (ornl.gov)

The projects complement additional CDC antimicrobial resistance investments, collectively known as CDC's AR Solutions Initiative. (cdc.gov)
In order to ensure the long-term sustainability of country-level actions to combat antimicrobial resistance and build resilient systems to prevent and treat infections at scale, countries would benefit from integrating antimicrobial resistance initiatives in their national strategies for universal health coverage and health security. (who.int)

After a full decade, one can state that the pioneering initiative has established new paradigms for Brazilian research. (fapesp.br)
Plant Factory Facility - supporting research to enhance the quality and productivity of herbal plants supplied to pharmaceutical, cosmeceutical and nutraceutical industry - has been set up at Thailand Science Park. (nstda.or.th)
Therefore, L. minor (Fig. 1 a) was put forward as a model system to study fundamental plant research and has been shown to contribute to the understanding of the photoperiodic control of flowering [ 15 , 16 ] and the discovery of auxin biosynthesis and sulfur assimilation pathways [ 17 , 18 ]. (biomedcentral.com)
1,2 Public health and research teams have previously used environmental surveil ance for New molecular diagnostic laboratories established antimicrobial-resistant organisms, ARGs 5 and the Global for the detection of SARS-CoV-2 in the Philippines Polio Eradication Initiative. (who.int)

A generally north to south spreading direction was found in these B. hybridum populations, towards a drier and warmer climate exhibiting higher moisture deficit for plant growth. (osti.gov)
ERGA is a people-based initiative that is entitled to be fully inclusive, diverse, and equal across all European countries with the aim to put Europe's biodiversity on the path to recovery by 2030 for the benefit of people, climate, and the planet. (forextv.com)

Malus) has convenient traits, such as a small nuclear genome (135Mbp) and a short generation time (8 weeks from seed to seed). (wikipedia.org)
Initial efforts to dissect the genetic architecture of traits (e.g., quantitative trait locus (QTL) mapping and genome-wide association studies (GWAS)) and genomic prediction efforts have relied primarily on SNP markers. (biomedcentral.com)

Tracing the Evolution of Shiitake Mushrooms Understanding Lentinula genomes and their evolution could provide strategies for converting plant waste into sugars for biofuel production. (doe.gov)

The first transgenic American chestnut trees were planted outside in 2006. (esf.edu)
2014). With the help of several collaborators, we are evaluating potential impacts of transgenic chestnut on soil fungi, aquatic insects, terrestrial insects, other wildlife, persistence in the environment, tree growth rates, pollen flow, and surrounding plant communities. (esf.edu)

Our results suggest a role for interactions between IPTV (rather than trait means) and environmental resource availability in promoting plant invasions, providing new insights into the significance of IPTV in shaping plant geographic distributions. (osti.gov)
Molecular Plant-Microbe Interactions. (usda.gov)
Optimize soil-plant interactions to maximize root exudation that incre. (genomebc.ca)

Today, an abundant marine green algal group, the prasinophytes, alongside prasinodermophytes and nonmarine chlorophyte algae, is facilitating insights into plant developments. (bvsalud.org)

Anatomy28

Organisms42

Diseases4

Chemicals and Drugs38

Analytical, Diagnostic and Therapeutic Techniques and Equipment28

Psychiatry and Psychology2

Phenomena and Processes101

Disciplines and Occupations4

Anthropology, Education, Sociology and Social Phenomena3

Technology, Industry, Agriculture16

Information Science13

Health Care19

Geographicals1

Genes15

Sequences11

International Wheat Genome Sequencing Consortium1

National Plant Genome Initiative1

20231

Gene10

Reference genome sequence1

Assemblies3

Species34

Arabidopsis6

Assembled and annotated1

Complete genome2

20191

20211

Sequencing27

Consortium4

Annotation1

Biology4

Analyses5

Sugarcane1

Researchers7

Secondary metabolites3

Comparative5

Green algae3

Whole genome s1

Joint Genome In1

Genomic data2

Genomics project1

Bacteria6

Crops2

Sequence data1

Biol1

Proteins7

Generate2

Encodes1

IWGSC1

Chromosomes2

Scientists2

Collaborative1

Pathogen1

Microbiome1

Transcriptome1

Analysis5

Sunflower2

Functional2

Data2

Characterization1

Project2

Variation5

Human3

Antimicrobial resistance2

Research4

Climate2

Traits2

Biofuel production1

Transgenic2

Interactions3

Insights1