DiseasesChemicals and DrugsAnalytical, Diagnostic and Therapeutic Techniques and EquipmentPhenomena and ProcessesDisciplines and OccupationsInformation ScienceHealth Care
ProteomicsProteomeVibrio InfectionsMass SpectrometryHeminSequence HomologyTandem Mass SpectrometryElectrophoresis, Gel, Two-DimensionalChromatography, LiquidDatabases, ProteinIsotope LabelingSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationProteinsProtein Array AnalysisComputational BiologyPeptidesSoftwareSequence Analysis, ProteinPeptide MappingAmino Acid SequenceReproducibility of ResultsMolecular Sequence DataGenomicsAlgorithmsProtein Processing, Post-TranslationalGene Expression ProfilingBiological MarkersSpectrometry, Mass, Electrospray IonizationTwo-Dimensional Difference Gel ElectrophoresisProtein Interaction MappingMetabolomicsChemical FractionationSystems BiologyMetabolic Networks and PathwaysDatabase Management SystemsBlood ProteinsOxygen IsotopesUser-Computer InterfaceProtein Interaction MapsSearch EngineInternetCluster AnalysisTumor Markers, Biological
Standards Initiative2018Quantitative proteomicsTranslational Proteomics AwardProteins2020Utilizing proteomics dataHigh-throughput20222021AchievementsMzMLReconnectMetabolomics and proteomicsWorkflowsWorld CongressStephen Pennington201720232024ResearcherClinicalProteinBrukerTreasurerResearchResearchersMIAPESchillingCore FacilityProteogenomicsWorkflowHuman proteomeAwardQuantificationFacilityDataOrganizationExperimentsSymposiumBiochemistryAdvancesTechnologyAnalysisMethodsTalksSimpson
Standards Initiative5
  • In the December 2009 issue of the Current Pharmacogenomics and Personalized Medicine (CPPM), Dr. Paik explains the new field of pharmacoproteomics and the approaching wave of "proteomics diagnostics" in relation to personalized medicine, HUPO's role in advancing proteomics technology applications, the HUPO Proteomics Standards Initiative, and the future impact of proteomics on medicine, science, and society. (elsevierpure.com)
  • Developed jointly by the HUPO Proteomics Standards Initiative and The Metabolomics Standards Initiative. (obofoundry.org)
  • The Human Proteome Organisation (HUPO) Proteomics Standards Initiative ( HUPO Proteomics Standards Initiative ), a proteomics community-driven organization, provides several different controlled vocabularies, standard data formats, converter and validator software tools. (elixir-europe.org)
  • mzML was developed by the HUPO Protein Standards Initiative (PSI) to replace the previous mzXml and mzData formats. (nonlinear.com)
  • MsQuality relies on the mzQC framework of quality metrics defined by the Human Proteom Organization-Proteomics Standards Initiative (HUPO-PSI). (riken.jp)
20183
  • In 2018 a series of interviews titled Perspectives in Proteomics Part-II was conducted at HUPO 2018 in Orlando, Florida. (hupo.org)
  • The NovaUCD 2018 Innovation Award was today presented to University College Dublin's (UCD) Professor Stephen Pennington, a global leader in proteomics (the study of proteins) research and innovation, by UCD President, Professor Andrew J. Deeks, at an event held at NovaUCD. (ucd.ie)
  • In 2018 she was awarded the HUPO Distinguished Achievements in Proteomics Award. (keystonesymposia.org)
Quantitative proteomics3
  • Bertis possesses world-class mass spectrometry-based quantitative proteomics technology and has successfully commercialized 'MastocheckTM' the world's first proteomics-based blood test solution for early breast cancer detection. (koreanewswire.co.kr)
  • Recent advancements in low-flow HPLC and acquisition rates in QQQ instrumentation is enabling MRM-based analytical methods using stable isotope-labeled standard (SIS) peptides for targeted quantitative proteomics to improve sensitivity, linear range, precision, accuracy, robustness, and most importantly throughput in the data acquisition as well as simplified data processing. (evosep.com)
  • Sap KA, Bezstarosti K, Dekkers DHW, Voets O, Demmers JAA (2017) Quantitative Proteomics Reveals Extensive Changes in the Ubiquitinome after Perturbation of the Proteasome by Targeted dsRNA-Mediated Subunit Knockdown in Drosophila . (proteomicscenter.nl)
Translational Proteomics Award1
  • Congratulations to Dr. Ying Ge for winning the HUPO Clinical and Translational Proteomics Award! (wisc.edu)
Proteins10
  • The four training topics are Proteomics 101, Proteogenomics, Post-Translational modification (PTM) analysis and Computational Tools for Functional Analysis of Proteins . (seprot.es)
  • It stems from the notion, Aebersold said in a presentation to the congress, that, while currently, "most biological research is focused on [individual] biological molecules … that is changing very quickly, and the focus is clearly shifting to networks, especially in the field of proteomics where proteins clearly act in coordination with other proteins to convert the phenotype. (genomeweb.com)
  • Advancement in high-throughput next-generation sequencing along with mass-spectrometry-based proteomics offers a bridge between mutational landscapes to variant proteins. (hupo.org)
  • The award is presented to individuals early in their careers in recognition of significant achievements in proteomics, or the large-scale study of proteins. (ou.edu)
  • At OU, the Wu laboratory concentrates on the development and implementation of innovative technologies in top-down proteomics, a method that measures whole proteins in human or other biological samples using a mass spectrometer. (ou.edu)
  • One of those technologies is proteomics, where tools like mass spectrometry and affinity-based assays allow scientists to measure thousands of proteins in biological samples. (somalogic.com)
  • With the Cold Spring Harbor Laboratory Press, Professor Simpson has written three leading text books on proteomics - Proteins and Proteomics: A Laboratory Manual (2003), Purifying Proteins for Proteomics: A Laboratory Manual (2004) and, more recently Basic Methods in Protein Purification and Analysis: A Laboratory Manual (2009). (longdom.org)
  • Paper on the detection of SARS-CoV-2 proteins by targeted proteomics in PLOS ONE . (proteomicscenter.nl)
  • Within the research field of proteomics, researchers study the link between proteins and disease. (lu.se)
  • However, mapping all our proteins, which is the initial goal of the new research field known as proteomics, will take a long time. (lu.se)
20201
  • HUPO has designed a new online Pre-Congress Training course which starts on September 28, 2020, and is included in your HUPO Connect 2020 registration . (seprot.es)
Utilizing proteomics data1
  • Bertis recently employed experts in the fields of bioinformatics and machine learning to conquer challenges in interpreting and utilizing proteomics data with AI and machine learning. (koreanewswire.co.kr)
High-throughput3
  • The Zirconium Ultra nano- and cap-UHPLC system supports a broad range of flow rates from 4 nL/min to 10 μl/min at 1,000 bar (15,000 psi), and is suitable for cap liquid chromatography in high-throughput proteomics and metabolomics. (scienceboard.net)
  • PRZOOM - /newswire/ - Charleston, SC, United States, 2022/02/28 - At US HUPO, Bruker Corporation announced its TIMS DIA-NN software for the high-throughput, deep and unbiased 4D proteomics workflow - Bruker.com . (przoom.com)
  • PaSER utilizes the same data streaming mechanisms for dia-PASEF workflows in real-time MS, allowing for triggering of spectral library search at the end of the acquisition run, supporting 'Run and Done' for high-throughput 4D proteomics workflows. (przoom.com)
20222
  • SEONGNAM--( Korea Newswire ) December 09, 2022 -- Bertis, a proteomics-based precision medicine technology development company (CEOs Dong-young Noh, Seung-man Han), announced research results of AI-based disease diagnosis model, on December 8, 2022, at Human Proteome Organization 2022 (HUPO 2022), the world's largest academic event in the field of proteomics[1]. (koreanewswire.co.kr)
  • At the HUPO held in Cancun, Mexico, from December 4 to 8, 2022, Bertis presented the results of its first research outcome that evaluates the accuracy of the diagnostic model for ovarian and pancreatic cancer. (koreanewswire.co.kr)
20211
Achievements3
  • The CNPN awards recognizing the strides and achievements of proteomics researchers. (cnpn.ca)
  • The particular challenge for the proteomics community now is to evolve its achievements in data management to date towards a more complete fulfillment of FAIR research data management and to close the remaining gaps in this regard. (elixir-europe.org)
  • The award recognizes a scientist for distinguished scientific achievements in the field of proteomics. (bioquicknews.com)
MzML3
  • Can your proteomics raw data recorded by a mass spectrometer be stored as an mzML file? (elixir-europe.org)
  • Within the proteomics community various converter software tools such as msconvert were implemented, which support the conversion of mass spectrometer output formats to the mzML standard data format as well as other conversions to standard data formats. (elixir-europe.org)
  • They read and write the HUPO-PSI mzML standard and have been incorporated into the ISB's transproteomicpipeline! (stanford.edu)
Reconnect2
  • The company will showcase these relationships, as well as the additions to its offering of mass spectrometry (MS) and chromatography instruments, during the Human Proteome Organization (HUPO) Reconnect event, being held virtually November 15-19. (manufacturingchemist.com)
  • This year HUPO ReCONNECT will be a fully virtual conference from November 15-19. (evosep.com)
Metabolomics and proteomics1
  • Dr Creek's laboratory currently uses metabolomics and proteomics to understand mechanisms of drug action and resistance for cancer and infectious diseases, with a major focus on African trypanosomiasis and malaria. (metabolomicssociety.org)
Workflows4
  • Bruker touted advances in collision cross section-enabled 4D proteomics workflows on the trapped ion mobility spectrometry time-of-flight (timsTOF) multiomics. (scienceboard.net)
  • Thermo Fisher Scientific has announced additional proteomics products and co-marketing agreements designed to advance the throughput, comprehensiveness and quality of proteomics workflows for applications such as single-cell studies and translational research. (manufacturingchemist.com)
  • While there has been significant progress in our ability to perform advanced analyses such as single-cell and translational proteomics, there are still improvements needed in the efficiency and reproducibility of workflows. (manufacturingchemist.com)
  • The agreements we're announcing today, will enable us to continue to deliver innovative proteomics solutions to customers with a goal to make these workflows accessible to everyone. (manufacturingchemist.com)
World Congress3
  • At the HUPO 10th Annual World Congress in Geneva, Switzerland, and at the JAIMA Conference in Tokyo, Japan, Bruker this week announces the release of its new high-performance amaZon speed and amaZon speed ETD ion trap mass spectrometers (ITMS) to meet the increasing demands of the proteomics, research and applied markets. (news-medical.net)
  • It will be presented during the HUPO 2015 Vancouver CongressSeptember 27-September 30, 2015 (https://www.hupo.org/events/hupo-14th-annual-world-congress-vancouver-2015-september-26-30/), the organization's 14th annual worldwide meeting. (bioquicknews.com)
  • Next October, between 5th and 8th, will take place in Madrid the 13th Human Proteome Organization (HUPO) World Congress. (ub.edu)
Stephen Pennington2
  • The interview series was directed by Sanjeeva Srivastava and organized by volunteers of the Young Proteomics Investigators Club (YPIC), mentored by Mark Baker, Christopher Borchers and Stephen Pennington. (hupo.org)
  • Stephen Pennington, Professor of Proteomics at the University College Dublin discusses the challenges in, and solutions for, identifying better biomarkers in clinical research to support personalized medicine. (thescientistschannel.com)
20171
  • In 2017, eleven experts were interviewed in a series of videos titled Perspectives in Proteomics. (hupo.org)
20232
  • CNPN is partnering with HUPO to offer two travel awards for trainees to attend HUPO 2023 in Busan, Korea. (cnpn.ca)
  • US HUPO Members and Drs. Ben Neely and Ben Orsburn started the series as they looked forward to US HUPO 2023 in Chicago, Illinois. (ushupo.org)
20242
  • The show also looks forward to getting its listeners hyped for the 2024 US HUPO Conference in Portland, Oregon! (ushupo.org)
  • Your last day to submit a workshop idea for US HUPO 2024! (proteomicscenter.nl)
Researcher1
  • We encourage every researcher interested in brain proteomics, including junior scientists to get in contact and join the initiative. (hbpp.org)
Clinical4
  • Questions of biological and clinical relevance predominated at the Human Proteome Organization's 10th annual meeting this week in Geneva, as much of the discussion focused on efforts to move the field of proteomics in more applied directions. (genomeweb.com)
  • Ping serves on the editorial board of Circulation, Clinical Proteomics, and Proteomics, and on the editorial advisory board of Journal of Proteome Research. (wikipedia.org)
  • He stresses the importance of biological/clinical plausibility driving the evolution of biotechnologies such as proteomics, instead of an isolated singular focus on the technology per se. (elsevierpure.com)
  • During the last 15-years he has been active in the implementation of collaborative proteomics projects, in particular clinical translational projects that align significant clinical needs to basic research. (ucd.ie)
Protein2
  • In recent years this has been focused on the discovery and subsequent quantitative measurement of protein biomarker signatures, the latter using targeted proteomics strategies. (ucd.ie)
  • When transitioning from discovery proteomics to targeted protein quantification, the multiple reaction monitoring (MRM)-based LC/MS method plays an essential role. (evosep.com)
Bruker1
  • Dr. Robin Park, Proteomics Bioinformatics Architect at Bruker, added: "Since our DL training model also incorporated phosphopeptide data, TIMScore enhanced the identification of phosphorylated PSMs and peptides by an average of 61% on our dataset. (przoom.com)
Treasurer1
  • He is the Chairperson of the Human Proteome Organization (HUPO) Finance Committee and Treasurer of HUPO. (longdom.org)
Research16
  • She conducts research in proteomics, systems biology and data science, particularly in advancing cardiac physiology. (wikipedia.org)
  • Dr. Young-Ki Paik directs the Yonsei Proteome Research Center in Seoul, Korea and was elected as the President of the Human Proteome Organization (HUPO) in 2009. (elsevierpure.com)
  • The New Investigator Award was established to honor the memory of Robert J. Cotter, a founding member of U.S. HUPO , for his many contributions to scientific research, and for his legacy as a mentor to young scientists. (ou.edu)
  • Ig Nobel prize winner and European Bureau Chief of Improbable Research Kees Moeliker will speak (in fluent Dutch) about ?Onwaarschijnlijk Onderzoek en de Ig Nobel prijzen? (improbable.com)
  • There he became deeply involved in a new field of biochemistry research, now called proteomics, and co-authored the first review of this newly emerging field. (ucd.ie)
  • In this webinar, four experts discuss the present challenges and opportunities for proteomics in aging research. (somalogic.com)
  • Proteomics is a key research area required for Canada to realize the potential of its economy, which is increasingly drawing upon the life sciences. (cnpn.ca)
  • Recognizing the social and economic benefits to be realized, Canada's leading research institutions have responded in several ways, including a commitment to develop research and training programs in proteomics. (cnpn.ca)
  • However, for proteomics research in Canada to reach its potential for international leadership, an integrated strategy and an effective communications infrastructure are needed to promote the development of a cooperative national research network. (cnpn.ca)
  • We host an annual symposium, showcasing Canadian proteomics research. (cnpn.ca)
  • The CNPN is a not-for-profit, federally incorporated organization created to provide a cooperative mechanism for building the proteomics research infrastructure in Canada and to further a better understanding of proteomics in the Canadian life sciences community. (cnpn.ca)
  • For the research outcomes, Mr. Kim said, "The model served as a game changer for proteomics-based diagnosis technology as it suggested the possibility of dramatical improvement in both the accuracy and efficiency of disease diagnosis by applying deep learning. (koreanewswire.co.kr)
  • Proteomics research has the potential to expand our scientific understanding and uncover new biomarkers to meet unmet medical needs," said Andreas Huhmer, Senior Director, Life Sciences Research Omics Marketing, Thermo Fisher Scientific. (manufacturingchemist.com)
  • The portfolio of columns is designed to enhance LC performance in biomarker, proteomics and drug research and development applications. (manufacturingchemist.com)
  • News in Proteomics Research: All the ASMS posters are open for everyone at no charge today and tomorrow! (blogspot.com)
  • Steve Pennington is a professor of proteomics and senior fellow at the Conway Institute of Biomolecular and Biomedical Research, University College Dublin, Ireland. (thescientistschannel.com)
Researchers5
  • This introductory level Proteomics Fundamentals training course is perfect for students and researchers new to proteomics, and those looking to expand their proteomics skillset. (seprot.es)
  • Now that "The Road to Chicago" has come to an end, The Proteomics Show is excited to continue connecting it's listeners to prestigious researchers and exciting ideas. (ushupo.org)
  • In order to make proteomics data and results worldwide findable and accessible for other researchers and software, FAIR public data repositories are needed. (elixir-europe.org)
  • The Proteomics Center at Erasmus MC develops mass spectrometry based proteomics technology and brings proteomics expertise, methodology and instrumentation to researchers in the life sciences in academics and industry. (proteomicscenter.nl)
  • Researchers are therefore now working on 'disease-based proteomics' as well. (lu.se)
MIAPE1
Schilling2
  • Dr. Schilling uses modern proteomics technologies, such as data-independent acquisitions, to investigate basic mechanisms of aging and senescence, as well as using this knowledge to develop biomarkers of aging and disease. (somalogic.com)
  • Dr. Schilling is the President of the U.S. Human Proteome Organization (US HUPO). (somalogic.com)
Core Facility1
  • Charles Pineau, director of the Biogenouest Proteomics Core Facility in Rennes, France, and one of the leaders of France's study of chromosome 14, likewise noted that "manpower and funding" were primary concerns. (genomeweb.com)
Proteogenomics1
  • This documentary displays concepts of proteogenomics by some of the leading scientists of HUPO working in the area. (hupo.org)
Workflow1
  • A co-marketing agreement between Thermo Fisher and Cellenion, developer of single-cell sample preparation technologies, is aimed to deliver a sample to results workflow for scientists performing single-cell proteomics analysis. (manufacturingchemist.com)
Human proteome2
  • The U.S. Human Proteome Organization, or U.S. HUPO, engages in scientific and educational activities to encourage the use of proteomics technologies and to disseminate knowledge pertaining to the human proteome and that of model organisms. (ou.edu)
  • Professor Pennington is also the incoming President of the Human Proteome Organisation (HUPO), the international scientific organisation of over 1000 members representing and promoting proteomics, which is headquartered in Vancouver, Canada. (ucd.ie)
Award1
  • Congratulations to our HUPO travel award winners! (cnpn.ca)
Quantification2
  • Using a commercially available complex proteomics sample (PeptiQuant Plus 125 from MRM Proteomics) spiked in a plasma matrix, calibration curves were established highlighting the significant quantitative advantages of MRM-based targeted quantification. (evosep.com)
  • How should the data and metadata of proteomics quantification results be stored? (elixir-europe.org)
Facility1
  • On moving to Ireland Professor Pennington helped to establish the University's proteomics facility at the UCD Conway Institute. (ucd.ie)
Data18
Organization1
  • The Canadian National Proteomics Network is a registered federal not-for-profit organization under the NFP Corporation Act. (cnpn.ca)
Experiments1
Symposium1
  • The HBPP promotes a Spring Workshop every year in addition to a symposium at every HUPO meeting. (hbpp.org)
Biochemistry1
  • Kathryn Lilley is the Professor of Cellular Dynamics in the Department of Biochemistry, University of Cambridge, UK, where she directs the Cambridge Center for Proteomics. (keystonesymposia.org)
Advances1
  • International experts will gather to discuss about the most recent advances in proteomics and its present and future applications. (ub.edu)
Technology1
Analysis2
  • Thermo Fisher is extending its co-marketing agreement with Biognosys, a developer of proteomics solutions that provides instruments, kits and software for laboratories performing plasma analysis. (manufacturingchemist.com)
  • ImmunoGlobe is publicly available through a user-friendly interface at www.immunoglobe.org and can be downloaded as a computable graph and network table.CONCLUSION: While the fields of proteomics and genomics have long benefited from network analysis tools, no such tool yet exists for immunology. (stanford.edu)
Methods1
  • In addition, a select number of peptides from the complex proteomics sample were quantified with very high productivity methods combining the use of Evosep One and Agilent 6495C LC/TQ. (evosep.com)
Talks1
  • We are excited to advocate several interesting customer talks during this year's HUPO conference. (evosep.com)
Simpson1
  • On a national level, Professor Simpson is the President of the Australasian Proteomics Society (APS). (longdom.org)