• A total of 1,194 potential lactic acid bacterium (LAB) isolates were tentatively grouped and identified by repetitive element sequence-based PCR, followed by sequence-based identification using 16S rRNA and pheS genes from a selection of genotypically unique LAB isolates. (who.int)
  • Sequences of DNA in the genes that are located between the EXONS. (lookformedical.com)
  • These nucleic acid polymers encode for the all of the materials an organism needs to live in the form of genes. (wikibooks.org)
  • Frameshifts and indel errors - Split genes across scaffolds - Highly repetitive sequences To face these challenges, we train annotators in recovering coding sequences in agreement with all available biological evidence. (slideshare.net)
  • To further understand the mechanism of the developmental switch from fronds to turions, we cloned and sequenced the genes of three large-subunit ADP-glucose pyrophosphorylases ( APLs ). (biomedcentral.com)
  • Sequence homology is an indication of the genetic relatedness of different organisms and gene function. (lookformedical.com)
  • In contrast, the major satellite DNA sequences that had a low sequence homology are present only in a few species. (edu.au)
  • TERMINAL REPEAT SEQUENCES flank both ends of another sequence, for example, the long terminal repeats (LTRs) on RETROVIRUSES. (lookformedical.com)
  • Three chromosome-specific repetitive probes labeled with either amino acetyl fluorene (AAF), mercury, or biotin were hybridized simultaneously to metaphase chromosomes prepared from human blood lymphocytes or to interphase tumor nuclei. (nih.gov)
  • The probe containing a 120-bp repetitive DNA sequence from rye, hybridized to the entire length of all rye chromosomes, but only to a few sites in 14 wheat chromosomes. (illinois.edu)
  • Telomeres are repetitive sequences at the ends of chromosomes protected by DNA binding proteins of the shelterin complex that form capping structures. (ttu.edu)
  • Three families of repetitive sequences hybridized with B chromosomes in different patterns, suggesting that the B chromosomes of A. peninsulae were derived from A chromosomes and that the three repetitive sequences were amplified independently on each B chromosome. (edu.au)
  • Sequence alignments and phylogenetic trees of these domains allow us to interpret the evolutionary relationship between these proteins, concluding that spectrin evolved from alpha-actinin by an elongation process that included two duplications of a block of seven repeats. (embl.de)
  • The present status of erythrocyte spectrin structure: the 106-residue repetitive structure is a basic feature of an entire class of proteins. (embl.de)
  • Experimental methods of multi-dimensional NMR spectroscopy, dynamics and theoretical description of spin system evolution, multiple resonance NMR technique for structural studies of proteins and nucleic acids by NMR spectroscopy, contemporary methods of structural biology, studies of complex biomolecular systems. (muni.cz)
  • A method is described for visualizing three nucleic acid sequences simultaneously by in situ hybridization using a new blue immunofluorescent label, amino methyl coumarin acetic acid (AMCA), in combination with green and red fluorescing FITC and TRITC. (nih.gov)
  • Three novel families of repetitive DNA sequences were molecularly cloned from the Korean field mouse (Apodemus peninsulae) and characterized by chromosome in-situ hybridization and filter hybridization. (edu.au)
  • Using long-read sequencing approaches can significantly improve the detection of L1Hs insertions present in individual genomes compared the to standard short-read sequencing approaches. (wikipedia.org)
  • The minor repetitive sequences are present in the genomes of the other seven Apodemus species. (edu.au)
  • Descriptions of specific amino acid, carbohydrate, or nucleotide sequences which have appeared in the published literature and/or are deposited in and maintained by databanks such as GENBANK, European Molecular Biology Laboratory (EMBL), National Biomedical Research Foundation (NBRF), or other sequence repositories. (lookformedical.com)
  • In my group we use and develop bioinformatics tools for analysing molecular sequence data. (lu.se)
  • Sequencing and analysis of Neanderthal genomic DNA. (uchicago.edu)
  • Digestion of genomic DNA of Trichinella spiralis with EcoRI reveals the presence of several families of repetitive DNA. (elsevierpure.com)
  • An increase number of repeats of a genomic, tandemly repeated DNA sequence from one generation to the next. (uams.edu)
  • All three putative protein and exon sequences were conserved, but the corresponding genomic sequences were extremely variable mainly due to the invasion of miniature inverted-repeat transposable elements (MITEs) into introns. (biomedcentral.com)
  • Irrespective of the LAB biodiversity, a large majority of the sugar and amino acid metabolites were detected in all sourdough samples. (who.int)
  • Spectrin, the major component of the membrane skeleton that provides elasticity to the cell, contains tandemly repeated sequences of 106 amino acid residues. (embl.de)
  • In DNA a sequence of three bases, which is called a codon, is responsible for the encoding of a single amino acid. (wikibooks.org)
  • The amino acid is added to a growing protein during the process of translation. (wikibooks.org)
  • in December 2006, UniMod lists 495 modifications including 144 amino acid substitutions [6]. (lu.se)
  • False positive peaks in ChIP-seq and other sequencing-based functional assays caused by unannotated high copy number regions. (uchicago.edu)
  • The Alu sequence family (named for the restriction endonuclease cleavage enzyme Alu I) is the most highly repeated interspersed repeat element in humans (over a million copies). (lookformedical.com)
  • DNA sequence-dependent compartmentalization and silencing of chromatin at the nuclear lamina. (uchicago.edu)
  • Progress in several laboratories over the past few years including substantial partial peptide and nucleotide sequence determination has greatly enhanced our knowledge of the structural properties of this large molecule (heterodimer = 465,000 daltons). (embl.de)
  • It is also called nucleotide sequence. (lookformedical.com)
  • Nucleotide sequences, usually upstream, which are recognized by specific regulatory transcription factors, thereby causing gene response to various regulatory agents. (lookformedical.com)
  • The electrophoretic mobility shift assay shows that TR4 can bind to the direct repeat 1 sequence element (AGGTTAAAGGTCT, nucleotide coordinates 1757-1769, TR4RE-HBV) on the HBV core promoter. (tmu.edu.tw)
  • Two small repeats of 516 and 604 bp, respectively, have been cloned and sequenced. (elsevierpure.com)
  • The two repeats are related to each other and to a 1.1-kb repetitive DNA. (elsevierpure.com)
  • The major satellite DNA sequence, which consisted of 30 bp elements, was organized in tandem arrays and constituted the majority of centromeric heterochromatin. (edu.au)
  • DNA transposable elements include bacterial IS (insertion sequence) elements, Tn elements, the maize controlling elements Ac and Ds, Drosophila P, gypsy, and pogo elements, the human Tigger elements and the Tc and mariner elements which are found throughout the animal kingdom. (lookformedical.com)
  • The prefix "deoxy" distinguishes DNA from its close relative RNA (ribonucleic acid). (wikibooks.org)
  • The method's focus is to globally detect mass differences, not to assign peptide sequences or modifications to individual spectra. (lu.se)
  • The goal is to assign acquired spectra to known peptide sequences and potential co- and post-translational modifica- tions. (lu.se)
  • Impact of nucleic acid self-alignment in a strong magnetic field on the interpretation of indirect spin-spin interactions. (muni.cz)
  • It the enterobacterial repetitive intergenic saged in the broth for 30 s [14]. (who.int)
  • To begin a characterization of the transition from the growth to the dormant phase we used abscisic acid (ABA), a plant hormone, to induce controlled turion formation in Spirodela polyrhiza and investigated their differentiation from fronds, representing their growth phase, into turions with respect to morphological, ultra-structural characteristics, and starch content. (biomedcentral.com)
  • They were all localized to the centromeric regions of all autosomes and categorized into major satellite DNA, type I minor, and type II minor repetitive sequences. (edu.au)
  • The type II minor repetitive sequence also hybridized interspersedly in the non-centromeric regions. (edu.au)
  • These approaches depend on sequence databases that are used by the engines to match real spectra to theoretical in silico spectra. (lu.se)
  • Highly repeated sequences, 100-300 bases long, which contain RNA polymerase III promoters. (lookformedical.com)
  • DNA is a long chain of linear polymers containing deoxyribose sugars and their covalently bonded bases known as nucleic acids. (wikibooks.org)
  • One of ent broth was poured into a sterile ated with hospital-acquired infections such groups of repetitive elements is plastic bag and the hands were mas- in intensive care units (ICUs) [1]. (who.int)
  • The second helix is interrupted by proline in some sequences. (embl.de)
  • These, however, are sometimes difficult to trace because of low sequence similarity between duplicated segments. (embl.de)
  • Organization of highly repeated sequences in mouse main-band DNA. (wikidata.org)
  • Organization and sequence studies of the 17-piece chicken conalbumin gene. (wikidata.org)
  • Highly repeated sequences, 6K-8K base pairs in length, which contain RNA polymerase II promoters. (lookformedical.com)
  • Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data. (uchicago.edu)
  • Sequencing data showed that the tdnQ sequences of A, C, B were very closely related, while the tdnQ fragment of BN3.1 and P. putida were only about 83% identical to the other sequences. (sciepub.com)
  • En Égypte, les isolats des patients étaient de types ERIC VII, VIII et IX et correspondaient à ceux des tubulures des appareils d'aspiration et de respiration artificielle et des cuvettes. (who.int)
  • The matching is com- plicated by the fact that there are protein modifications and the sequence databases store the unmodified sequences. (lu.se)
  • In the recently reported partial sequence of the chicken non-muscle alpha-actinin, a repetitive sequence homologous to the internal repeat in spectrin occurs several times. (embl.de)
  • Characterizing natural variation using next-generation sequencing technologies. (uchicago.edu)
  • Similar sequences are not detected in other species by hybridisation. (elsevierpure.com)
  • The basic repetitive unit appears to contain one copy of each repeat. (elsevierpure.com)