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*  Protein primary structure
Protein sequencing Nucleic acid primary structure Translation Pseudo amino acid composition SANGER F (1952). "The arrangement ... allows highly accurate prediction of the tertiary structure by homology modeling. If the full-length protein sequence is ... Amino acids are polymerised via peptide bonds to form a long backbone, with the different amino acid side chains protruding ... Protein sequence is typically notated as a string of letters, listing the amino acids starting at the amino-terminal end ...
*  Piscivorin
They display significant amino acid sequence homology. Sixteen cysteine residues, forming 8 disulfide bonds, are strictly ... Piscivorin has the following amino acid sequence. Piscivorin reduces high potassium-evoked smooth muscle contraction, but does ... A sequence comparison of piscivorin and other CRISP family proteins suggests that the Glu186 residue is the crucial site for ... The nucleotide sequence of piscivorin cDNA spans 1323 bp, containing an open reading frame of 240 codons. ...
*  Fructose 1,6-bisphosphatase
Marcus F, Gontero B, Harrsch PB, Rittenhouse J (Mar 1986). "Amino acid sequence homology among fructose-1,6-bisphosphatases". ... Fructose bisphosphatase deficiency Fructose Gluconeogenesis Metabolism Marcus F, Harrsch PB (May 1990). "Amino acid sequence of ... IMPase and FBPase share a sequence motif (Asp-Pro-Ile/Leu-Asp-Gly/Ser-Thr/Ser) which has been shown to bind metal ions and ... do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited ...
*  Chemokine
... they share gene sequence and amino acid sequence homology. They all also possess conserved amino acids that are important for ... those with a specific amino acid sequence (or motif) of glutamic acid-leucine-arginine (or ELR for short) immediately before ... The CC chemokine (or β-chemokine) proteins have two adjacent cysteines (amino acids), near their amino terminus. There have ... A loop of approximately ten amino acids follows the first two cysteines and is known as the N-loop. This is followed by a ...
*  YARS
Kleeman TA, Wei D, Simpson KL, First EA (Jun 1997). "Human tyrosyl-tRNA synthetase shares amino acid sequence homology with a ... by their cognate amino acid. Because of their central role in linking amino acids with nucleotide triplets contained in tRNAs, ... 2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40-5. doi:10.1038/ ... 2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci ...
*  5-HT1E receptor
They share 57% amino acid sequence homology and have some pharmacological characteristics in common. Both receptors are Gi- ... indicating a high degree of evolutionary conservation of genetic sequence, which suggests that the 5-HT1E receptor has an ...
*  Type three secretion system
Some of the proteins participating in T3SS share amino-acid sequence homology to flagellar proteins. Some of the bacteria ... Recognition is done through a secretion signal-a short sequence of amino acids located at the beginning (the N-terminus) of the ... This is done in order to define the function of specific amino acids or regions in a protein. The introduction of a gene or a ... usually within the first 20 amino acids), that the needle complex is able to recognize. Unlike other secretion systems, the ...
*  PAEP
Huhtala ML, Seppälä M, Närvänen A, Palomäki P, Julkunen M, Bohn H (Jun 1987). "Amino acid sequence homology between human ... Julkunen M, Seppälä M, Jänne OA (Dec 1988). "Complete amino acid sequence of human placental protein 14: a progesterone- ... This gene is a member of the kernel lipocalin superfamily whose members share relatively low sequence similarity but have ... Vaisse C, Atger M, Potier B, Milgrom E (1990). "Human placental protein 14 gene: sequence and characterization of a short ...
*  Bacillus anthracis
H9401 has 99.679% sequence homology with Ames Ancestor with an amino acid sequence homology of 99.870%. H9401 has a circular ... These include 1) N-glycosylation of N-acetyl-muramic acid, 2) O-acetylation of N-acetylmuramic acid and 3) N-deacetylation of N ... The sequencing coverage level suggests a molecular ratio of pXO1:pXO2:chromosome as 3:2:1 which is identical to the Ames ... Due to the high pathogenecity and sequence similarity to the Ames Ancestor, H9401 will be used as a reference for testing the ...
*  Eukaryotic translation elongation factor 1 alpha 1
... with high amino acid sequence homology (approximately 90% identity). The sequences of their promoter regions are also highly ... Rao TR, Slobin LI (Mar 1986). "Structure of the amino-terminal end of mammalian elongation factor Tu". Nucleic Acids Research. ... Addition of ethanolamine-phosphoglycerol to specific glutamic acid residues on EF-1 alpha". The Journal of Biological Chemistry ... Nucleic Acids Research. 18 (6): 1513-6. doi:10.1093/nar/18.6.1513. PMC 330519 . PMID 2183196. Bec G, Kerjan P, Zha XD, Waller ...
*  Mucorpepsin
Amino acid sequence homology with the other aspartic proteinases, disulfide bond arrangement and site of carbohydrate ... Mucorpepsin (EC 3.4.23.23, Mucor rennin, Mucor aspartic proteinase, Mucor acid proteinase, Mucor acid protease, Mucor miehei ... doi:10.1016/0076-6879(70)19033-1. Ottesen, M.; Rickert, W. (1970). "The acid protease of Mucor miehei". Methods Enzymol. 19: ...
*  Phosducin-like
The protein shares extensive amino acid sequence homology with phosducin, a phosphoprotein expressed in retina and pineal gland ... 2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci ... 2001). "Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs ... 2006). "The LIFEdb database in 2006". Nucleic Acids Res. 34 (Database issue): D415-8. doi:10.1093/nar/gkj139. PMC 1347501 . ...
*  Carnitine palmitoyltransferase II deficiency
The human homolog of the CPT II enzyme shows 82.2% amino acid sequence homology with the rat protein. Significant structural ... This gene is composed of 5 exons that encode a protein 658 amino acids in length. To date, sixty disease-causing mutations ... within the coding sequence of CPT2 have been reported in the literature, of which 41 are thought to result in amino acid ... The majority of the genetic abnormalities in CPT II deficient patients affect amino acid residues somewhat removed from the ...
*  Interferon alpha-1
... amino acid sequence homology, and about 35% identity with IFNB. The high degree of amino-acid sequence similarity within the ... All of these IFN-α proteins exhibit high homology in their primary, secondary, and tertiary structures. IFNA and IFNB are ... Viruses and immune complexes (ICs) containing nucleic acids can access intracellular TLRs (TLR3, TLR7/8 and TLR9) after binding ... Shrivastav M, Niewold TB (2013). "Nucleic Acid sensors and type I interferon production in systemic lupus erythematosus". ...
*  Hongotoxin
HgTX1 is 39 amino acids long and shows an overall amino acid sequence homology of 89% to margatoxin (MgTX). Hongotoxin (HgTX) ...
*  CASS4
... and at 786 amino acids is the longest one. Amino acid sequence homology of this isoform of human CASS4 with other family ... but lacks obvious similarity at the level of primary amino acid sequence. It also lacks a YDYVHL sequence at the N-terminal end ... 786 amino acids, considered the major isoform), the third one contains 6 exons and encodes a shorter isoform b (732 amino acids ... 349 amino acids). Cumulatively, the CASS4 transcripts are most highly expressed in spleen and lung among normal tissues, and ...
*  LSm
The order of these seven LSm proteins in this ring is not known, but based on amino acid sequence homology with the Sm proteins ... Each of the seven Sm proteins has greater amino acid sequence homology to a corresponding Lsm protein than to the other Sm ... such as multiple sequence alignment of the primary structure (amino acid sequence), and structural alignment of the tertiary ... comparisons between the various LSm homologs identified two sequence motifs, 32 nucleic acids long (14 amino acids), that were ...
*  GroEL
Waldinger D, Eckerskorn C, Lottspeich F, Cleve H (1988). "Amino-acid sequence homology of a polymorphic cellular protein from ... Ward LD, Hong J, Whitehead RH, Simpson RJ (1990). "Development of a database of amino acid sequences for human colon carcinoma ... Venner TJ, Singh B, Gupta RS (1990). "Nucleotide sequences and novel structural features of human and Chinese hamster hsp60 ( ...
*  Αr9 RNA
... of these overlapping ORFs could not be assigned to any functional category on the basis of the amino acid sequence homology. ... All these sequences showed significant Infernal E-values (1.50e-39 - 14.02e-21) and bit-scores. The rest of the sequences found ... The manual inspection of the sequences found with the CM using Infernal allowed finding 26 true homolog sequences, all of them ... The regions exhibiting significant homology to the query sequence (78-89% similarity) were extracted to create a Covariance ...
*  Αr35 RNA
... of these overlapping ORFs could not be assigned to any functional category on the basis of the amino acid sequence homology. ... The nucleotide sequence of Smr35B was initially used as query to search against the Rfam database. This homology search ... The manual inspection of the 84 sequences found with the CM using Infernal allowed finding seven true homolog sequences: two ... The regions exhibiting significant homology to the query sequence (78-89% similarity) were extracted to create a Covariance ...
*  Yersinia enterocolitica
"Human Thyroid Autoantigens and Proteins of Yersinia and Borrelia Share Amino Acid Sequence Homology That Includes Binding ...
*  Fibroblast growth factor
... complete amino acid sequence and homologies". Science. 230 (4732): 1385-8. Bibcode:1985Sci...230.1385G. doi:10.1126/science. ... A short stretch of acidic amino acids located between the D1 and D2 domains has auto-inhibitory functions. This 'acid box' ... Although these factors possess remarkably similar sequence homology, they do not bind FGFRs and are involved in intracellular ... These proteins had a high degree of amino acid identity but were determined to be distinct mitogens. Human FGF2 occurs in low ...
*  Hwp1
Micrograph of esophageal candidiasis showing hyphaes Hwp1 of Candida albicans shares similar sequence homology of amino acids ... This homology appears between fragments of hwp1 sequence and α-gliadin and γ-gliadin T-cell epitopes in celiac disease. ...
*  Fossil
... can compare protein amino acid or nucleotide sequence homology (i.e., similarity) to evaluate taxonomy and evolutionary ... Because rock sequences are not continuous, but may be broken up by faults or periods of erosion, it is very difficult to match ... which can be used for radiocarbon dating or extraction and sequencing of DNA, protein, or other biomolecules. Additionally, ...
*  Site-specific recombination
Based on amino acid sequence homology and mechanistic relatedness most site-specific recombinases are grouped into one of two ... The names stem from the conserved nucleophilic amino acid residue that they use to attack the DNA and which becomes covalently ... Joining of left ends to left or right to right is avoided due to the asymmetric "overlap" sequence between the staggered points ... in which DNA strand exchange takes place between segments possessing at least a certain degree of sequence homology. Site- ...
*  TENM3
2800 amino acids. Teneurins are highly conserved within and between species. The primary structure, or amino acid sequence ... There are 41 amino acids in TCAPs, except for TCAP-3 from Ten-m3, which has 40. TCAPs show structural homology to the CRF ... The linker region is made up of ~200 amino acid residues and is found immediately distal to the transmembrane domain. This is ... More distally is the globular domain consisting of a 700-800 amino acid residue region. There are 17 conserved cysteine ...
*  Protein 4.2
1990). "Complete amino acid sequence and homologies of human erythrocyte membrane protein band 4.2". Proc. Natl. Acad. Sci. U.S ...