Osipov, Vladimir (2016). "Wavelet Analysis on Symbolic Sequences and Two-Fold de Bruijn Sequences". Journal of Statistical ... f-fold n-ary de Bruijn sequence' is an extension of the notion n-ary de Bruijn sequence, such that the sequence of the length f ... OEIS sequence A166315 (Lexicographically smallest binary de Bruijn sequences) De Bruijn sequence CGI generator Applet generator ... the cyclic sequences 11100010 and 11101000 are two-fold binary de Bruijn sequences. The number of two-fold de Bruijn sequences ...

... sequences have been removed at a certain similarity threshold. Sequence analysis in social sciences Sequence analysis in ... representative sequences also designate substrings of a sequence that characterize the sequence. In Sequence analysis in social ... Sequence clusters can reduce a large database of sequences to a smaller set of sequence representatives, each of which should ... Sequence representatives allow the effective coverage of the original database with fewer sequences. The database of sequence ...

1995). "Sequence Analysis of the Genome of the Unicellular Cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence ... 2003). "The genome sequence of Blochmannia floridanus: comparative analysis of reduced genomes". Proc. Natl. Acad. Sci. U.S.A. ... 2003). "Complete genome sequence and analysis of Wolinella succinogenes". Proc. Natl. Acad. Sci. U.S.A. 100 (20): 11690-5. ... 2001). "Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021". Proc. Natl. Acad. Sci. ...

Parallelized Sequence Alignment for Next-Generation Sequencing Data Analysis". PLOS ONE. 9 (6): 1754-1760. Bibcode:2014PLoSO... ... Sequence type: protein or nucleotide *Sequence type: protein or nucleotide **Alignment type: local or global *Sequence type: ... 1998). Biological sequence analysis: probabilistic models of proteins and nucleic acids. Cambridge, UK: Cambridge University ... This list of sequence alignment software is a compilation of software tools and web portals used in pairwise sequence alignment ...

Riccombeni A, Vidanes G, Proux-Wéra E, Wolfe KH, Butler G (2012). "Sequence and analysis of the genome of the pathogenic yeast ... List of sequenced animal genomes List of sequenced archaeal genomes List of sequenced bacterial genomes List of sequenced ... December 2005). "Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae". Nature. 438 ( ... May 2008). "Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)". Nature ...

October 2002). "Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii". Nature ... List of sequenced archaeal genomes List of sequenced bacterial genomes List of sequenced fungi genomes List of sequenced plant ... "TAIR - Genome Assembly". The Arabidopsis Genome Initiative (December 2000). "Analysis of the genome sequence of the flowering ... DNA was first sequenced in 1977. The first free-living organism to have its genome completely sequenced was the bacterium ...

November 1997). "Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative ... This list of sequenced archaeal genomes contains all the archaea known to have publicly available complete genome sequences ... October 2000). "Genome sequence of Halobacterium species NRC-1". Proceedings of the National Academy of Sciences of the United ... June 2004). "Genome sequence of Picrophilus torridus and its implications for life around pH 0". Proceedings of the National ...

Entrez Metadata Sequence analysis Sequence motif Sequerome Peri S, Navarro JD, Kristiansen TZ, et al. (January 2004). "Human ... annotate results of sequence analysis or lab work, customize and automate the processing of sets of sequence data etc. InstaSeq ... A typical sequence profiling tool carries this further by using an actual DNA, RNA, or protein sequence as an input and allows ... A sequence profiling tool in bioinformatics is a type of software that presents information related to a genetic sequence, gene ...

Wang L, Mao Y, Kong F, Li G, Ma F, Zhang B, Sun P, Bi G, Zhang F, Xue H, Cao M (2013-05-29). "Complete sequence and analysis of ... List of sequenced eukaryotic genomes List of sequenced bacterial genomes List of sequenced archaeal genomes Genome skimming ... Huang YY, Matzke AJ, Matzke M (2013-08-30). "Complete sequence and comparative analysis of the chloroplast genome of coconut ... Logacheva MD, Schelkunov MI, Penin AA (2011-01-01). "Sequencing and analysis of plastid genome in mycoheterotrophic orchid ...

The mathematical term fundamental sequence can refer to: In analysis, Cauchy sequence. In discrete mathematics and computer ... In set theory, a fundamental sequence for an ordinal is a sequence of ordinals approaching the limit ordinal from below. This ... disambiguation page lists articles associated with the title Fundamental sequence. If an internal link led you here, you may ...

Steinegger M, Söding J (November 2017). "MMseqs2 enables sensitive protein sequence searching for the analysis of massive data ... Sequence clustering is often used to make a non-redundant set of representative sequences. Sequence clusters are often ... In bioinformatics, sequence clustering algorithms attempt to group biological sequences that are somehow related. The sequences ... sequences CluSTr: A single-linkage protein sequence clustering database from Smith-Waterman sequence similarities; covers over ...

2000). "Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays". Nature Biotechnology. ... The microbeads are then arrayed in a flow cell for sequencing and quantification. The sequence signatures are deciphered by the ... After several rounds of sequence determination, using hybridization of fluorescent labeled probes, a sequence signature of ~16- ... Each signature sequence is cloned onto one of a million microbeads. The technique ensures that only one type of DNA sequence is ...

This similarity in sequences can then go on to help find common ancestry. Alignment-free sequence analysis Cladistics ... From the resulting MSA, sequence homology can be inferred and phylogenetic analysis can be conducted to assess the sequences' ... Hughey R, Krogh A (1996). "Hidden Markov models for sequence analysis: extension and analysis of the basic method". CABIOS. 12 ... Motif finding, also known as profile analysis, is a method of locating sequence motifs in global MSAs that is both a means of ...

Mouse Genome Sequencing Consortium) (December 2002). "Initial sequencing and comparative analysis of the mouse genome". Nature ... Bambara R, Wu R (June 1975). "DNA sequence analysis. Terminal sequences of bacteriophage phi80". The Journal of Biological ... Barrell BG, Weith HL, Donelson JE, Robertson HD (March 1975). "Sequence analysis of the ribosome-protected bacteriophase ... Feldmann H (July 1967). "[Sequence analysis of oliogonucleotides by means of micrococcal nuclease]". European Journal of ...

Bakhtin provided concepts such as dialogism from which come techniques such as Dialogical Sequence Analysis. This is a ... Original works published in 1934, 1960). Leiman, M. (2004). Dialogical sequence analysis. In: H. J. M. Hermans & G. Dimaggio ( ... A review of CAT looking back over the 30 years to its beginnings contains a meta-analysis of 11 outcome studies of CAT. The ... In addition to the procedural sequence model, a second distinguishing feature of CAT is the use of reciprocal roles (RRs). ...

Huang, T. S. (1981). Image Sequence Analysis. Springer Science & Business Media. p. 29. ISBN 9783642870378. Stanković, Radomir ... One example is Motion JPEG, which is simply a sequence of individually JPEG-compressed images. This approach is quick and ... Interframe compression complicates editing of an encoded video sequence. One subclass of relatively simple video coding formats ... Lee, Jack (2005). Scalable Continuous Media Streaming Systems: Architecture, Design, Analysis and Implementation. John Wiley & ...

Huang, T. S. (1981). Image Sequence Analysis. Springer Science & Business Media. p. 29. ISBN 9783642870378. Chen, Wen-Hsiung; ... There are several advantages of global motion compensation: It models the dominant motion usually found in video sequences with ... B frames are more complex because the image sequence must be transmitted and stored out of order so that the future frame is ... "Combined Spatial And Temporal Coding Of Digital Image Sequences". Efficient Transmission of Pictorial Information. ...

... analysis; and protein sequence analysis and structure prediction. Gene Codes Corporation Genedata software for data analysis ... DNASTAR provides software for sequence editing and annotation, primer and clone design; sequence assembly & ... Strand Life Sciences TimeLogic offers DeCypher FPGA-accelerated BLAST, Smith-Waterman, HMMER and other sequence search tools. ( ...

On the basis of Mikhail Bakhtin's theory of utterances, Leiman devised a dialogical sequence analysis. This method starts from ... Leiman, M. (2004). Dialogical sequence analysis. In: H. J. M. Hermans & G. Dimaggio (eds.), The dialogical self in ... On the basis of the results of the quantitative analysis, some positions can be selected, by the client or assessor, for closer ... The simplest approach, however, is to perform a standard principal component analysis (PCA). To obtain a bi-plot, a PCA is once ...

The workflow of MLST involves: 1) data collection, 2) data analysis and 3) multilocus sequence analysis. In the data collection ... The websites contain interrogation and analysis software which allow users to query their allele sequences and sequence types. ... In the data analysis step, all unique sequences are assigned allele numbers and combined into an allelic profile and assigned a ... In contrast to MLST, this analysis does assign a higher similarity between sequences differing only a single nucleotide and a ...

Purification and sequence analysis". J. Biol. Chem. 262 (12): 5808-11. doi:10.1016/S0021-9258(18)45646-3. PMID 3571235. Dahr W ... It was first sequenced in 1987 the peptide sequence of 72 amino acids having been determined earlier that year. The gene has 97 ... The transition site from homologous to nonhomologous sequences can be localized within Alu repeat sequences. There are ~80000 ... There is a signal sequence of 19 amino acid residues. The leader peptide differs by one amino acid and the next 26 amino acids ...

His research has advanced sociological methods, particularly in the areas of social network analysis and sequence analysis. One ... in recognition of his work in social network analysis and sequence analysis. He is an inaugural member of the international ... Social Sequence Analysis. New York: Cambridge. Cornwell, Benjamin, Jonathan Gershuny, and Oriel Sullivan. 2019. "The Social ... Sequence Analysis Association's advisory board. Carr, Deborah, Shelley Correll, Robert Crosnoe, Jeremy Freese, Mary C. Waters, ...

Protein sequence analysis & classification. InterPro. Retrieved 1 May 2018. "Annotation and Analysis". ElDorado. Genomatix. ... The peptide sequence lacks a signal sequence either at the N-terminus or internally. No transmembrane domains have been ... This sequence is partially complementary to the human gene PCNX1. A total of 20 transcript variants of FAM208b, including one ... Protein FAM208B (family with sequence similarity 208 member b) is a protein that in humans is encoded by the FAM208B gene. The ...

I. Nucleotide sequence analysis". J. Mol. Biol. 131 (3): 573-592. doi:10.1016/0022-2836(79)90008-1. PMID 390161. Ikemura, ... In E. coli the spf gene is flanked by polA (upstream) and yihA (downstream). A CRP binding sequence and -10 and -35 promoter ... Bækkedal and Haugen made a Spot42 consensus secondary structure based on all known "spf" sequences at the time (2015) and found ... Beisel and Storz demonstrated with microarray analysis and reporter fusions that Spot 42 plays a broader role in metabolism by ...

"High-throughput sequencing for community analysis: the promise of DNA barcoding to uncover diversity, relatedness, abundances ... Using nanopore sequencing, a single molecule of DNA or RNA can be sequenced without the need for PCR amplification or chemical ... "Nanopore sequencing makes it possible to decode the sequence of DNA and RNA". WhatisBiotechnology.org. Varongchayakul N, Song J ... Sequencing using αHL has been developed through basic study and structural mutations, moving towards the sequencing of very ...

Annotation is performed after a genome is sequenced and assembled, and is a necessary step in genome analysis before the ... Gribskov M, Devereux J, Burgess RR (January 1984). "The codon preference plot: graphic analysis of protein coding sequences and ... As more sequenced genomes began to be available in early and mid 2000s, coupled with the numerous protein sequences that were ... Genomic browsers are software products that simplify the analysis and visualization of large genomic sequence and annotation ...

"NetPhos 2.0 Server". Center for Biological Sequence Analysis. Retrieved 13 May 2013. "SUMOsp 2.0 - SUMOylation Site Prediction ... According to an analysis of the secondary protein structure, TTC39B is most likely to be expressed in the endoplasmic reticulum ...

Center for Biological Sequence Analysis. Miao, Y.; Cui, L.; Chen, Z.; Zhang, L (2016). "Gene expression profiling of DMU-212- ... "Methods and algorithms for statistical analysis of protein sequences". Proceedings of the National Academy of Sciences. 89 (6 ... Co-expression analyses have found that TMEM217 was up-regulated in response to mechanical stretch in dermal fibroblast cells ... No known function has been attributed to TMEM217, however a co-expression analysis in dermal fibroblasts has predicted the ...

Analysis of the reaction sequence". J. Biol. Chem. 266 (10): 6324-8. PMID 2007585. Portal: Biology v t e (EC 2.9.1, Pyridoxal ...

Wu, R. (August 1970). "Nucleotide sequence analysis of DNA. I. Partial sequence of the cohesive ends of bacteriophage lambda ... and developed the first method for sequencing DNA and studying transgenic plants. Wu, H (1931). "Studies on Denaturation of ...

Kozak discovered the sequence through a detailed analysis of DNA genomic sequences. The Kozak sequence is not to be confused ... The Kozak consensus sequence is so common that the similarity of the sequence around the AUG codon to the Kozak Sequence is ... The SD sequence is located near the start codon which is in contrast to the Kozak sequence which actually contains the start ... Kozak, M (1984-01-25). "Compilation and analysis of sequences upstream from the translational start site in eukaryotic mRNAs". ...

Comparative genomics, and population analysis are examples go post-assemble analysis. The complexity of sequence assembly is ... assembling sequencing reads to create full-length (sometimes novel) sequences, without using a template (see de novo sequence ... De novo sequence assemblers Sequence alignment De novo transcriptome assembly Set cover problem List of sequenced animal ... Some sequencing technologies such as PacBio do not have a scoring method for the their sequenced reads. A common tool used in ...

... association analysis, result summary and visualization. Meta-analysis of whole genome sequencing studies provides an attractive ... Whole genome sequencing (WGS), also known as full genome sequencing, complete genome sequencing, or entire genome sequencing, ... DNA microarray DNA profiling DNA sequencing Duplex sequencing Exome Sequencing Single cell sequencing Horizontal correlation ... Eukaryotic genomes are sequenced by several methods including Shotgun sequencing of short DNA fragments and sequencing of ...

March 2007). "Sequencing and analysis of chromosome 1 of Eimeria tenella reveals a unique segmental organization". Genome ... List of sequenced bacterial genomes List of sequenced animal genomes List of sequenced eukaryotic genomes List of sequenced ... October 2002). "Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii". Nature ... September 2009). "Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans" (PDF). Nature. 461 ( ...

For Illumina sequencing, 36-base single-end sequencing reads are most commonly performed. Sequence alignment and analysis: Due ... Sequencing: The fragments are then sequenced. When RRBS was first developed, Sanger sequencing was initially used. Now, next ... "Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis". Nucleic Acids Res. 33(18 ... Current sequencing technologies are limited in regards to profiling areas of repeated sequences. This is unfortunate in regards ...

Visualization of sequence conservation is a tough task of comparative sequence analysis. As we know, it is highly inefficient ... Data mining Molecular evolution Comparative anatomy Homology Sequence mining Alignment-free sequence analysis Darling AE, ... sequence similarity) to genes of known function. Orthologous sequences are related sequences in different species: a gene ... VISTA is a comprehensive suite of programs and databases for comparative analysis of genomic sequences. It was built to ...

Missing sequence identification. Statistical analysis. Calculations. Duplicate transaction identification. Pivot table creation ... in sequences) for a specific field. For example, finding a broken sequence in an invoice number sequence. Sort field: Specifies ... Age analysis: Specifies whether the product supports making age analysis (stratification by date). Benford's law: Specifies ... Generally, however, it is used to refer to any data extraction and analysis software. This would include programs such as data ...