DNA sequencing
"Nucleotide sequence analysis of DNA. IX. Use of oligonucleotides of defined sequence as primers in DNA sequence analysis". ... Shotgun sequencing is a sequencing method designed for analysis of DNA sequences longer than 1000 base pairs, up to and ... Wu R, Tu CD, Padmanabhan R (1973). "Nucleotide sequence analysis of DNA. XII. The chemical synthesis and sequence analysis of a ... of sequencing attained with modern DNA sequencing technology has been instrumental in the sequencing of complete DNA sequences ...
List of sequenced bacterial genomes
2004). "Genomic analysis of Bacteroides fragilis reveals extensive DNA inversions regulating cell surface adaptation". PNAS. ... 1995). "Sequence Analysis of the Genome of the Unicellular Cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence ... Feb 2006). "Genome sequence of the cat pathogen, Chlamydophila felis". DNA Res. 13 (1): 15-23. doi:10.1093/dnares/dsi027. PMID ... 2003). "The genome sequence of Blochmannia floridanus: comparative analysis of reduced genomes". Proc. Natl. Acad. Sci. U.S.A. ...
Sequence analysis of synthetic polymers
The methods for sequence analysis of synthetic polymers differ from the sequence analysis of biopolymers (e. g. DNA or proteins ... Other options besides traditional NMR spectroscopy for sequence analysis are listed here; these include Kerr-effect for ... for the sequence analysis of synthetic copolymers. NMR spectroscopy allows determination of the relative abundance of ... Structure analysis of the reaction products by IR and 1H and 13C NMR". Journal of Polymer Science: Polymer Physics Edition. 20 ...
List of sequenced plastomes
"Complete sequence and analysis of the plastid genome of the unicellular red alga Cyanidioschyzon merolae". DNA Research. 10 (2 ... and comparative analysis of sequence evolution among 17 vascular plants". DNA Research. 11 (4): 247-61. doi:10.1093/dnares/11.4 ... Wang L, Mao Y, Kong F, Li G, Ma F, Zhang B, Sun P, Bi G, Zhang F, Xue H, Cao M (2013-05-29). "Complete sequence and analysis of ... List of sequenced eukaryotic genomes List of sequenced bacterial genomes List of sequenced archaeal genomes Genome skimming ...
DNA and RNA codon tables
An Interactive Online Database for the Analysis of Codon Usage and Sequence Composition". Bioinformatics for DNA Sequence ... The mRNA sequence is determined by the sequence of genomic DNA. In this context, the standard genetic code is referred to as ... The DNA codons in such tables occur on the sense DNA strand and are arranged in a 5′-to-3′ direction. Different tables with ... In the standard code, the sequence AUG-read as methionine-can serve as a start codon and, along with sequences such as an ...
Arthrobacter luteus
"Nucleotide sequence analysis of DNA. 28. Arthrobacter luteus restriction endonuclease recognition sequence and its cleavage map ... The cleavage occurs at the center of the palindromic tetranucleotide sequence, which gives even-ended duplex DNA fragments ... The Alu will then be used to digest the SV40 DNA. The fragments have been able to be arranged so that the physical cleavage map ... is extracted from the bacterium and acts at the centre of a palindromic tetranucleotide sequence to give even-ended duplex DNA ...
Sequence homology
Bioinformatics for DNA Sequence Analysis. Methods in Molecular Biology. Vol. 537. Humana Press. pp. 23-38. doi:10.1007/978-1- ... Sequence homology is the biological homology between DNA, RNA, or protein sequences, defined in terms of shared ancestry in the ... Two organisms that are very closely related are likely to display very similar DNA sequences between two orthologs. Conversely ... Homologous sequence regions are also called conserved. This is not to be confused with conservation in amino acid sequences, ...
Cornell University
Padmanabhan, R.; Wu, Ray (1972). "Use of oligonucleotides of defined sequences as primers in DNA sequence analysis". ... Wu, Ray (April 19, 1972). "Nucleotide Sequence Analysis of DNA". Nature. 236 (68): 198-200. doi:10.1038/newbio236198a0. PMID ... Plant genetics pioneer Ray Wu invented the first method for sequencing DNA, considered a major breakthrough in genetics as it ...
Alignment-free sequence analysis
The process has been applied to DNA sequence analysis. The use of iterated maps for sequence analysis was first introduced by ... To define the distance between two DNA or protein sequences, kmacs estimates for each position i of the first sequence the ... The pioneering approaches for sequence analysis were based on sequence alignment either global or local, pairwise or multiple ... In bioinformatics, alignment-free sequence analysis approaches to molecular sequence and structure data provide alternatives ...
Sequence analysis
In bioinformatics, sequence analysis is the process of subjecting a DNA, RNA or peptide sequence to any of a wide range of ... Analysis Sequence mining Alignment-free sequence analysis Fourier transform Least-squares spectral analysis List of sequence ... Sequence assembly refers to the reconstruction of a DNA sequence by aligning and merging small DNA fragments. It is an integral ... Since presently-available DNA sequencing technologies are ill-suited for reading long sequences, large pieces of DNA (such as ...
Borrelia lusitaniae
by 16S Ribosomal DNA Sequence Analysis". International Journal of Systematic Bacteriology. 47 (4): 921-925. doi:10.1099/ ... Molecular analysis of the patient isolate allowed the classification of the strain to B. lusitaniae, a genospecies previously ... Vitorino, L. L.; Margos, G.; Zé-Zé, L.; Kurtenbach, K.; Collares-Pereira n, M. (2010). "Plasmid profile analysis of Portuguese ... "Fine-Scale Phylogeographic Structure of Borrelia lusitaniae Revealed by Multilocus Sequence Typing". PLOS ONE. 3 (12): 1-13. ...
List of bioinformatics companies
DNASTAR provides DNA sequence assembly and analysis. Gene Codes Corporation Genedata software for data analysis and storage. ... Strand Life Sciences TimeLogic offers DeCypher FPGA-accelerated BLAST, Smith-Waterman, HMMER and other sequence search tools. ( ...
Nigrospora sphaerica
DNA sequence analysis further confirmed the identity. Another case found N. sphaerica isolated from a corneal ulcer. A woman in ... rRNA sequence comparison of the ITS region confirmed N. sphaerica identity. Cases of leaf spot disease of kiwi fruit (Actinidia ... Analysis of corneal scrapings showed presence of hyphae elements suggesting cause of ulcer from a fungal pathogen. Isolated ...
ATG16L1
August 2004). "Cloning and analysis of human Apg16L". DNA Sequence. 15 (4): 303-5. doi:10.1080/10425170400004104. PMID 15620219 ... August 2004). "Cloning and analysis of human Apg16L". DNA Sequence. 15 (4): 303-5. doi:10.1080/10425170400004104. PMID 15620219 ... ATG16L2 is a related protein, which is also highly conserved (both ATG16L1 and 2 share 94 and 83% sequence identity). It has ... Yamazaki K, Onouchi Y, Takazoe M, Kubo M, Nakamura Y, Hata A (2007). "Association analysis of genetic variants in IL23R, ...
Tricorder
Palatnick, Aspyn; Zhou, Bin; Ghedin, Elodie; Schatz, Michael C (2020-12-07). "iGenomics: Comprehensive DNA sequence analysis on ... "Purdue chemical-analysis method promises fast results". Pursue University. 2006-03-16. Archived from the original on April 8, ... "The world's first DNA "tricorder" in your pocket". Cold Spring Harbor Laboratory. 2020-12-07. Retrieved 2020-12-26. "NASA ... Michael Schatz and his intern Aspyn Palatnick published a paper on the first mobile app to allow anybody to study DNA virtually ...
Pseudomonas chlororaphis
Mulet, Magdalena; Lalucat, Jorge; García-Valdés, Elena (March 2010). "DNA sequence-based analysis of the Pseudomonas species". ... Based on 16S rRNA analysis, similar species have been placed in its group. A comparative genomic and phylogenomic study in 2020 ... Jul 2000). "Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence". Int J Syst Evol Microbiol. 50 (4): 1563- ... Nikolaidis, Marios; Mossialos, Dimitris; Oliver, Stephen G.; Amoutzias, Grigorios D. (2020-07-24). "Comparative Analysis of the ...
Euarchonta
Further DNA sequence analyses supported the Euarchonta hypothesis. Despite multiple papers pointing out that some mitochondrial ... Kumar, Vikas; Hallström, Björn M.; Janke, Axel (2013-04-01). "Coalescent-Based Genome Analyses Resolve the Early Branches of ... Comparing multi-gene analyses with phylogenomic results leaves monophyly of Euarchonta doubtful". Integrative Zoology. 10 (2): ... and despite earlier studies showing near total congruence of mtDNA-based and nuclear-based trees when such sequences were ...
DMRT1
2004). "DNA sequence and analysis of human chromosome 9". Nature. 429 (6990): 369-74. Bibcode:2004Natur.429..369H. doi:10.1038/ ... PubMed id 20379614)1, 4 Rose J.E....Uhl G.R. (2010) 8. DNA sequence and analysis of human chromosome 9. (PubMed id 15164053)1, ... 2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci ... This gene is found in a cluster with two other members of the gene family, having in common a zinc finger-like DNA-binding ...
PSAT1
Cloning and sequence analysis of the complementary DNA". Biochemistry. 26 (13): 3975-82. doi:10.1021/bi00387a035. PMID 3651428 ...
Pseudomonas fluorescens
Mulet, Magdalena; Lalucat, Jorge; García-Valdés, Elena (March 2010). "DNA sequence-based analysis of the Pseudomonas species". ... It belongs to the Pseudomonas genus; 16S rRNA analysis as well as phylogenomic analysis has placed P. fluorescens in the P. ... The phylogenomic analysis clearly showed that the 25 strains annotated as P. fluorescens did not form a monophyletic group. In ... Phylogenetic and genomic analysis, though, has revealed that the entire phl gene cluster is ancestral to P. fluorescens, many ...
Targeted analysis sequencing
... (sometimes called target amplicon sequencing) (TAS) is a next-generation DNA sequencing technique ... "Targeted DNA Methylation Analysis by Next-generation Sequencing". Journal of Visualized Experiments. 96 (96): 52488. doi: ... v t e (DNA sequencing, All stub articles, Genetics stubs). ... Next-gen sequencing use shorter reads 50-400 base pairs which ... TAS is also useful in DNA studies because it allows for amplification of the needed gene area via PCR, which is followed by ...
Oxford Nanopore Technologies
Palatnick, Aspyn; Zhou, Bin; Ghedin, Elodie; Schatz, Michael C (December 2020). "iGenomics: Comprehensive DNA sequence analysis ... "Mini DNA sequencer tests true". EMBL. "VIB announces collaboration with Oxford Nanopore Technologies on new DNA sequencing ... "Sequencing DNA in Space - SpaceRef". spaceref.com. Retrieved 25 July 2016. Rainey, Kristine (29 August 2016). "First DNA ... analysis of structural variants in cancer, haplotyping, analysis of foetal DNA, and other applications. Publications indicate a ...
Pseudomonas
Mulet M, Lalucat J, García-Valdés E. (2010). "DNA sequence-based analysis of the Pseudomonas species". Environ Microbiol. 12 (6 ... Recently, 16S rRNA sequence analysis has redefined the taxonomy of many bacterial species. As a result, the genus Pseudomonas ... This mis-anotation problem has been reported by other analyses as well. In 2000, the complete genome sequence of a Pseudomonas ... 2020 Recently, 16S rRNA sequence analysis redefined the taxonomy of many bacterial species previously classified as being in ...
Chromosome 18
"DNA sequence and analysis of human chromosome 18". Nature. 437 (7058): 551-5. Bibcode:2005Natur.437..551N. doi:10.1038/ ... "Trapping and sequence analysis of 1138 putative exons from human chromosome 18". Mol Psychiatry. 8 (6): 619-23. doi:10.1038/sj. ... Chromosome 18 spans about 80 million base pairs (the building material of DNA) and represents about 2.5 percent of the total ... the collaborative consensus coding sequence project (CCDS) takes an extremely conservative strategy. So CCDS's gene number ...
Environmental DNA
"A Guide to Environmental DNA (eDNA) by Biomeme". Biomeme. Wang, Xinkun (2016). Next-generation Sequencing Data Analysis. Boca ... Relic DNA dynamics Extracellular DNA, sometimes called relic DNA, is DNA from dead microbes. Naked extracellular DNA (eDNA), ... The purified DNA is then amplified for a specific gene target so it can be sequenced and categorised based on its sequence. ... If the diversity of sequences contained in the relic DNA pool is sufficiently different from that in the intact DNA pool, then ...
DNA microarray
"Light-generated oligonucleotide arrays for rapid DNA sequence analysis". PNAS. 91 (11): 5022-5026. Bibcode:1994PNAS...91.5022P ... Each DNA spot contains picomoles (10−12 moles) of a specific DNA sequence, known as probes (or reporters or oligos). These can ... A DNA microarray (also commonly known as DNA chip or biochip) is a collection of microscopic DNA spots attached to a solid ... which do not interfere with the fluorescent dyes used on the target sequence. DNA microarrays can be used to detect DNA (as in ...
DNA Day
"International Consortium Publishes Sequence, Analysis Of The Human Genome". World High Technology Society. Archived from the ... National DNA Day. Retrieved 2020-02-25. National DNA Day (official website) National DNA Day on Facebook National DNA Day on ... April 25 has since been declared "International DNA Day" and "World DNA Day" by several groups. Genealogical DNA testing ... International Human Genome Sequencing Consortium (2004-10-21). "Finishing the euchromatic sequence of the human genome". Nature ...
MacVector
... an integrated sequence analysis program for the Macintosh". Olson SA. Methods Mol Biol. (1994) 25,195-201. "DNA Sequencing ... MacVector is a collection of sequence analysis algorithms linked to various sequence editors, including a single sequence ... Protein analysis. Contig assembly and chromatogram editing Aligning cDNA against genomic templates Creating dot plots of DNA to ... MacVector is a commercial sequence analysis application for Apple Macintosh computers running Mac OS X. It is intended to be ...
HGSNAT
2006). "DNA sequence and analysis of human chromosome 8". Nature. 439 (7074): 331-5. Bibcode:2006Natur.439..331N. doi:10.1038/ ... 2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci ... 2007). "Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane ... 2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40-5. doi:10.1038/ ...
HAUS6
2004). "DNA sequence and analysis of human chromosome 9". Nature. 429 (6990): 369-74. Bibcode:2004Natur.429..369H. doi:10.1038/ ... The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro". DNA Res. 7 (4): 273-81. doi: ... 2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci ... 2001). "Toward a Catalog of Human Genes and Proteins: Sequencing and Analysis of 500 Novel Complete Protein Coding Human cDNAs ...
Paul Mischel
"Non-Chromosomal DNA Drives Tumor Evolution". The Scientist Magazine®. Retrieved 2019-02-01. Wu, Sihan; Turner, Kristen M.; ... Integrating mechanistic studies with analyses of tumor tissue from patients treated in clinical trials, Mischel and colleagues ... Mischel and colleagues integrated whole genome sequencing, cytogenetics and structural modeling to accurately and globally ... Prior to 2017, extrachromosomal DNA was thought to be a rare, but interesting event in cancer (1.4% of tumors), of unclear ...
UCKL1
2002). "The DNA sequence and comparative analysis of human chromosome 20". Nature. 414 (6866): 865-71. Bibcode:2001Natur.414.. ... 2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci ... 2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40-5. doi:10.1038/ ... 2006). "A probability-based approach for high-throughput protein phosphorylation analysis and site localization". Nat. ...
Ariosa v. Sequenom
The paternal DNA in the mother's plasma had to have come from the fetus. Then, they could reliably identify fetal DNA, which ... And each case seems to present a new low in terms of the depth and quality of analysis." She sees a common thread in these ... So they wanted to focus on genetic fragments containing paternally inherited sequences the mother did not share, but had ... The technology for amplifying and detecting DNA was already well known and generally used to detect DNA. There was a problem, ...
Phyllanthaceae
"Molecular phylogenetic analysis of Euphorbiaceae sensu stricto based on plastid and nuclear DNA sequences and ovule and seed ... "Molecular phylogenetic analysis of Euphorbiaceae sensu stricto based on plastid and nuclear DNA sequences and ovule and seed ... but the first strong evidence of its polyphyly came in 1993 with the first maximum parsimony analysis of DNA sequences of the ... "Phylogenetics of seed plants: an analysis of nucleotide sequences from the plastid gene rbcL." Annals of the Missouri Botanical ...
Antonius Suwanto
DNA sequence and mechanism of transfer". Journal of Bacteriology. 182 (1): 81-90. doi:10.1128/jb.182.1.81-90.2000. PMC 94243. ... "Comparison of DNA Extraction Methods for Microbial Community Analysis in Indonesian Tempe Employing Amplified Ribosomal ... Microbiological and Molecular Biological Analysis Based on 16S rRNA Gene". Microbiology Indonesia. 2 (1): 17-21. doi:10.5454/mi ... Intergenic Spacer Analysis". HAYATI Journal of Biosciences. 19 (2): 93-98. doi:10.4308/hjb.19.2.93. ISSN 1978-3019. Barus, T.; ...
Phage display
Target proteins or DNA sequences are immobilized to the wells of a microtiter plate. Many genetic sequences are expressed in a ... While pVI has been useful for the analysis of cDNA libraries, pIII and pVIII remain the most utilized coat proteins for phage ... from which the phagemids can be collected and the relevant DNA sequence excised and sequenced to identify the relevant, ... These displaying phages can then be screened against other proteins, peptides or DNA sequences, in order to detect interaction ...
Geogenanthus poeppigii
An analysis of DNA sequences indicate Geogenanthus is closely related to the genus Plowmanianthus followed by Cochliostema. ... A cladistic analysis of rbcL sequences and morphology. Systematic Botany, 28(2), 270-292. Stevens, P. F. (2001 onwards). ... A cladistic analysis of rbcL sequences and morphology. Systematic Botany, 28(2), 270-292. Wade, D. J., Evans, T. M., & Faden, R ... is placed as the sister to Dichoriscantieae and Siderasis in the cladogram from the combined morphology and sequence analysis, ...
NFIX
Norquay LD, Yang X, Sheppard P, Gregoire S, Dodd JG, Reith W, Cattini PA (2003). "RFX1 and NF-1 associate with P sequences of ... Tarapore P, Richmond C, Zheng G, Cohen SB, Kelder B, Kopchick J, Kruse U, Sippel AE, Colmenares C, Stavnezer E (1997). "DNA ... Apt D, Liu Y, Bernard HU (1994). "Cloning and functional analysis of spliced isoforms of human nuclear factor I-X: interference ... Müller K, Mermod N (2000). "The histone-interacting domain of nuclear factor I activates simian virus 40 DNA replication in ...
PANO1
From an analysis of the PANO1 protein, it was observed that the protein contains a low amount of lysine and a very low amount ... "SAPS < Sequence Statistics < EMBL-EBI". www.ebi.ac.uk. Retrieved 2021-08-01. "PSORT II Prediction". psort.hgc.jp. Retrieved ... "DNA folding results on 21Aug01-20-42-28 for 73.242.41.233". www.unafold.org. Retrieved 2021-08-01. "Protein BLAST: search ... A functional analysis of these types of genes revealed that they often have tissue-specific expression in tissues such as the ...
Proto-oncogene tyrosine-protein kinase Src
Nada S, Okada M, MacAuley A, Cooper JA, Nakagawa H (May 1991). "Cloning of a complementary DNA for a protein-tyrosine kinase ... Both the N-terminally attached myristic acid and the peptide sequences of the unique region are involved in the interaction. ... An immunohistochemical and biochemical analysis". J. Pathol. 180 (4): 383-8. doi:10.1002/(SICI)1096-9896(199612)180:4. 3.0.CO;2 ...
Baum-Welch algorithm
Bishop, Martin J.; Thompson, Elizabeth A. (20 July 1986). "Maximum likelihood alignment of DNA sequences". Journal of Molecular ... Durbin, Richard (23 April 1998). Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids. Cambridge ... An observation sequence is given by Y = ( Y 1 = y 1 , Y 2 = y 2 , … , Y T = y T ) {\displaystyle Y=(Y_{1}=y_{1},Y_{2}=y_{2},\ ... This is equivalent to the number of times state i is observed in the sequence from t = 1 to t = T − 1. b i ∗ ( v k ) = ∑ t = 1 ...
Arthrospira platensis
August 2016). "Whole genomic DNA sequencing and comparative genomic analysis of Arthrospira platensis: high genome plasticity ... April 2010). "Genomic structure of an economically important cyanobacterium, Arthrospira (Spirulina) platensis NIES-39". DNA ... and genetic diversity". DNA Research. 23 (4): 325-38. doi:10.1093/dnares/dsw023. PMC 4991836. PMID 27330141. Kebede E, Ahlgren ...
MAPK8IP3
The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro". DNA Res. 6 (3): 197-205. doi: ... 2005). "The sequence and analysis of duplication-rich human chromosome 16". Nature. 432 (7020): 988-94. Bibcode:2004Natur.432.. ... 2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci ... 2001). "Sequence, structure and pathology of the fully annotated terminal 2 Mb of the short arm of human chromosome 16". Hum. ...
Sequence motif
For example, many DNA binding proteins that have affinity for specific DNA binding sites bind DNA in only its double-helical ... researchers search and find motifs using computer-based techniques of sequence analysis, such as BLAST. Such techniques belong ... a sequence of elements of the pattern notation matches a sequence of amino acids if and only if the latter sequence can be ... Bailey TL, Williams N, Misleh C, Li WW (July 2006). "MEME: discovering and analyzing DNA and protein sequence motifs". Nucleic ...
Phaeodarea
Through phylogenetic analyses it has been discovered that Phaeodarea is a monophyletic clade, but the historical orders and ... and large-subunit ribosomal DNA trees support monophyly of Rhizaria, Retaria and Excavata". Mol. Phylogenet. Evol. 44 (1): 255- ... "Small-subunit ribosomal RNA gene sequences of Phaeodarea challenge the monophyly of Haeckel's Radiolaria". Protist. 155 (1): 53 ...
Globodera ellingtonae
Analysis of the ITS rDNA sequences shows that the Globodera population isolated from Oregon and Idaho is in a different ... rDNA sequences. DNA was purified, amplified, and the PCR products cloned. The isolates used for molecular comparison are listed ... In 2017 a genome sequence for G. ellingtonae was published. Due to quarantine restrictions imposed on any new pathogen, G. ... The molecular characterization was done by several molecular methods which include sequence-specific multiplex PCR, PCR-RFLP of ...
Shiladitya DasSarma
... the Adaptation of Halobacterium Species NRC-1 to Its Extreme Environment through Computational Analysis of Its Genome Sequence ... and DNA repair systems. DasSarma's recent research (2010's) on an Antarctic halophilic microorganism, Halorubrum lacusprofundi ... The genome sequence helped to further establish the validity of the Archaea through the finding of similarities to higher ... In the 1990s, he organized and led the team that deciphered the first genome sequence and genetic code for a halophilic microbe ...
Candida blankii
Blood sample DNA sequencing of the 26S ribosomal subunit can definitively identify C. blankii. In nature, Candida blankii forms ... Candida blankii was discovered in the 1960s, after the analysis of the organs of infected mink in Canada by F. Blank. These ...
CLINT1
V. The coding sequences of 40 new genes (KIAA0161-KIAA0200) deduced by analysis of cDNA clones from human cell line KG-1". DNA ... 2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci ... Liou YJ, Lai IC, Wang YC, Bai YM, Lin CC, Lin CY, Chen TT, Chen JY (June 2006). "Genetic analysis of the human ENTH (Epsin 4) ... 2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40-5. doi:10.1038/ ...
Halobacterium salinarum
Vreeland, H; Rosenzweig, W D; Lowenstein, T; Satterfield, C; Ventosa, A (December 2006). "Fatty acid and DNA analyses of ... Whole genome sequences are available for two strains of H. salinarum, NRC-1 and R1. The Halobacterium sp. NRC-1 genome consists ... However, his findings date the crystal surrounding the bacteria, and DNA analysis suggests the bacteria themselves are likely ... To compensate, they have evolved a sophisticated DNA repair mechanism. The genome encodes DNA repair enzymes homologous to ...
Drosophila simulans
Through the analysis of cytoplasmic incompatibility and similar mitochondrial DNA, it has been shown that D. simulans and D. ... Louis Genome Sequencing Center Drosophila simulans at FlyBase Drosophila simulans at Ensembl Genomes Metazoa View the droSim1 ... Wolff, J N; Nafisinia, M; Sutovsky, P; Ballard, J W O (2012). "Paternal transmission of mitochondrial DNA as an integral part ... Drosophila simulans has also played an important role in sequencing the genomes for certain Wolbachia strains. D. simulans eggs ...
LILRA3
Norman PJ, Carey BS, Stephens HA, Vaughan RW (June 2003). "DNA sequence variation and molecular genotyping of natural killer ... Zhang Z, Henzel WJ (October 2004). "Signal peptide prediction based on analysis of experimentally verified cleavage sites". ... "HLA class I allelic sequence and conformation regulate leukocyte Ig-like receptor binding". Journal of Immunology. 186 (5): ...
Cordon-bleu protein-like 1
The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro". DNA Research. 6 (1): 63-70. ... "A probability-based approach for high-throughput protein phosphorylation analysis and site localization". Nature Biotechnology ... "Prediction of the coding sequences of unidentified human genes. XIII. ...
Metabolism
Himmelreich R, Hilbert H, Plagens H, Pirkl E, Li BC, Herrmann R (November 1996). "Complete sequence analysis of the genome of ... This information is protected by DNA repair mechanisms and propagated through DNA replication. Many viruses have an RNA genome ... Each different protein has a unique sequence of amino acid residues: this is its primary structure. Just as the letters of the ... The two nucleic acids, DNA and RNA, are polymers of nucleotides. Each nucleotide is composed of a phosphate attached to a ...
WIPI2
2003). "The DNA sequence of human chromosome 7". Nature. 424 (6945): 157-64. Bibcode:2003Natur.424..157H. doi:10.1038/ ... 2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci ... 2001). "Toward a Catalog of Human Genes and Proteins: Sequencing and Analysis of 500 Novel Complete Protein Coding Human cDNAs ... 2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40-5. doi:10.1038/ ...
Genomic imprinting
Lazaraviciute G, Kauser M, Bhattacharya S, Haggarty P, Bhattacharya S (2014). "A systematic review and meta-analysis of DNA ... It is an epigenetic process that involves DNA methylation and histone methylation without altering the genetic sequence. These ... "DNA sequence polymorphisms in a panel of eight candidate bovine imprinted genes and their association with performance traits ... "DNA sequence polymorphisms within the bovine guanine nucleotide-binding protein Gs subunit alpha (Gsα)-encoding (GNAS) genomic ...
Genome size
... genome sizes Human genome Junk DNA List of sequenced eukaryotic genomes Non-coding DNA Plant DNA C-values Database Selfish DNA ... This hypothesis is confirmed by the analysis of the pseudogenes of Buchnera where the number of deletions was more than ten ... Some single-celled organisms have much more DNA than humans, for reasons that remain unclear (see non-coding DNA and C-value ... The loss of large section of genomes could in fact lead to a loss in promotor sequences. This could in fact pushed the ...
Keith A. Crandall
His lab also focuses on the development and testing of methods for DNA sequence analysis, including leading methods in ... "A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence ...
PIR (gene)
2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci ... oncoprotein suggest the encoded protein may act as a transcriptional cofactor and be involved in the regulation of DNA ... Adams M, Jia Z (2005). "Structural and biochemical analysis reveal pirins to possess quercetinase activity". J. Biol. Chem. 280 ... 2004). "Purification, crystallization and preliminary X-ray analysis of human pirin". Acta Crystallogr. D. 59 (Pt 8): 1496-8. ...
NXPH1
2003). "The DNA sequence of human chromosome 7". Nature. 424 (6945): 157-164. Bibcode:2003Natur.424..157H. doi:10.1038/ ... 2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci ... 2003). "Human chromosome 7: DNA sequence and biology". Science. 300 (5620): 767-772. Bibcode:2003Sci...300..767S. doi:10.1126/ ... 2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40-45. doi:10.1038/ ...