... and validated their post-transcriptional control by SdsR/RyeB RNA. RydB RNA RyhB RNA RyeE RNA Wassarman KM, Repoila F, Rosenow ... The exact 5′ and 3′ ends of this RNA are uncertain. This RNA overlaps the SraC/RyeA RNA on the opposite strand suggesting that ... Page for RyeB RNA at Rfam v t e (Non-coding RNA, All stub articles, Molecular and cellular biology stubs). ... The SdsR/RyeB RNA is a non-coding RNA that was identified in a large scale screen of E. coli. ...
... (Caulobacter response to famine RNA) is a family of non-coding RNAs found in Caulobacter crescentus. CrfA is expressed ... CrfA RNA is one of only 8 putative ncRNAs conserved in the closely related Caulobacter sp. K31. CrfA was found to be ... Landt SG, Abeliuk E, McGrath PT, Lesley JA, McAdams HH, Shapiro L (May 2008). "Small non-coding RNAs in Caulobacter crescentus ... Landt SG, Lesley JA, Britos L, Shapiro L (September 2010). "CrfA, a Small Noncoding RNA Regulator of Adaptation to Carbon ...
The ISO61 (IsrA) RNA is a bacterial non-coding RNA that is found between the abgR and ydaL genes in Escherichia coli and ... IS102 RNA IS128 RNA Chen S, Lesnik EA, Hall TA, Sampath R, Griffey RH, Ecker DJ, Blyn LB (2002). "A bioinformatics based ... Page for IS061 RNA at Rfam v t e (Non-coding RNA, All stub articles, Molecular and cellular biology stubs). ... Jørgensen MG, Thomason MK, Havelund J, Valentin-Hansen P, Storz G (May 2013). "Dual function of the McaS small RNA in ...
HgcC family RNA HgcE RNA HgcF RNA Klein RJ, Misulovin Z, Eddy SR (May 2002). "Noncoding RNA genes identified in AT-rich ... Page for HgcG RNA at Rfam v t e (Non-coding RNA, All stub articles, Molecular and cellular biology stubs). ... The HgcG RNA gene is a non-coding RNA that was identified computationally and experimentally verified in AT-rich ... in silico and experimental identification of the Pyrococcus abyssi H/ACA sRNAs and their target sites in ribosomal RNAs". ...
... is a class of non-coding RNA present in actinomycetes. 6C RNA was originally discovered as a conserved RNA structure ... Page for the 6C RNA at Rfam v t e (Articles with short description, Short description matches Wikidata, Non-coding RNA, Cis- ... Additional work established that 6C RNAs regulate a variety of protein-coding genes by acting as trans-acting antisense RNAs. ... coelicolor version is transcribed as RNA. Transcription of the S. coelicolor RNA increases during sporulation, and three ...
FnrS RNA was later found to be transcribed from the same intergenic region as C0343 RNA. C0299 RNA C0465 RNA C0719 RNA Tjaden B ... The C0343 RNA is a bacterial non-coding RNA of 74 nucleotides in length that is found between the ydaN and dbpA genes in the ... Page for C0343 RNA at Rfam v t e (Articles with short description, Short description matches Wikidata, Non-coding RNA, All stub ... Durand S, Storz G (March 2010). "Reprogramming of anaerobic metabolism by the FnrS small RNA". Mol. Microbiol. 75 (5): 1215- ...
... may refer to: RNA (journal), a Cold Spring Harbor Laboratory Press scientific journal RNA Biology, a Landes ... Bioscience scientific journal This disambiguation page lists articles associated with the title RNA journal. If an internal ...
In molecular biology the ArcZ RNA (also known as RyhA and SraH) is a small non-coding RNA (ncRNA). It is the functional product ... ArcZ is an Hfq binding RNA that functions as an antisense regulator of a number of protein coding genes. This non-coding RNA ... Page for SraH RNA at Rfam (Non-coding RNA). ... 2001). "Novel small RNA-encoding genes in the intergenic ... "Genome-wide identification of Hfq-regulated small RNAs in the fire blight pathogen Erwinia amylovora discovered small RNAs with ...
HgcC family RNA HgcE RNA HgcG RNA SscA RNA Klein RJ, Misulovin Z, Eddy SR (May 2002). "Noncoding RNA genes identified in AT- ... Page for HgcF RNA at Rfam v t e (Non-coding RNA, All stub articles, Molecular and cellular biology stubs). ... The HgcF RNA gene is a non-coding RNA identified computationally and experimentally verified in AT-rich hyperthermophiles. The ... in silico and experimental identification of the Pyrococcus abyssi H/ACA sRNAs and their target sites in ribosomal RNAs". ...
RyfA RNA RydB RNA RybB RNA Antal M, Bordeau V, Douchin V, Felden B (March 2005). "A small bacterial RNA regulates a putative ... Page for RydC RNA at Rfam v t e (Non-coding RNA, All stub articles, Molecular and cellular biology stubs). ... RydC is known to bind the Hfq protein, which causes a conformational change in the RNA molecule. The Hfq/RydC complex is then ... RydC is a bacterial non-coding RNA. RydC is thought to regulate a mRNA, yejABEF, which encodes an ABC transporter protein. ...
It was proposed that PhotoRC RNAs are cis-regulatory elements functioning at the RNA level, since bacterial cis-regulatory RNAs ... Two such RNA classes were identified and called the PhotoRC-I and PhotoRC-II motifs. PhotoRC-I RNAs were detected in the ... PhotoRC RNA motifs refer to conserved RNA structures that are associated with genes acting in the photosynthetic reaction ... The PhotoRC motif RNAs are located upstream of, and presumably in the 5′ untranslated regions (5′ UTRs), of genes that are ...
The nuoG RNA motif is a conserved RNA structure detected by bioinformatics. It is located in the presumed 5' untranslated ... nuoG RNAs are found only in some, but not all, enterobacteria. There is a question of whether sequences in the genus Salmonella ... Page for nuoG RNA at Rfam v t e (Orphaned articles from December 2021, All orphaned articles, Articles lacking reliable ... Because of the question of the Salmonella sequences, some ambiguity remains as to whether or not nuoG RNAs do, in fact, ...
CsrB/RsmB RNA family PrrB/RsmZ RNA family RsmY RNA family RsmX CsrA protein Weilbacher T, Suzuki K, Dubey AK, Wang X, Gudapaty ... RNA Biology. 11 (5): 580-593. doi:10.4161/rna.28676. PMC 4152364. PMID 24786463. Page for CsrC RNA family at Rfam Pfam page for ... CsrC RNA binds multiple copies of CsrA, a protein that post-transcriptionally regulates central carbon flux, biofilm formation ... Argaman L, Hershberg R, Vogel J, Bejerano G, Wagner EG, Margalit H, Altuvia S (June 2001). "Novel small RNA-encoding genes in ...
Antisense small RNAs (abbreviated anti small RNA or anti-sRNA) are short RNA sequences (about 50-500 nucleotides long) that are ... which are specific RNA that respond to signal RNA through complementary base pairing utilizing anti-small RNA, have been found ... Sponge RNA is another term used to describe anti-sRNAs. While the mRNA-regulating small RNAs were discovered in 1984, the first ... RNA-Seq has emerged as a popular method for the identification of small RNA, since its ability to distinguish between messenger ...
... is the structural ribosomal RNA (rRNA) for the large subunit (LSU) of eukaryotic cytoplasmic ribosomes, and ... RNA. 21 (10): 1719-1730. doi:10.1261/rna.051144.115. PMC 4574749. PMID 26283689. Lafontaine, D. L. J.; Tollervey, D. (2001). " ... "Computational discovery of hidden breaks in 28S ribosomal RNAs across eukaryotes and consequences for RNA Integrity Numbers". ... Eperon, I. C.; Anderson, S.; Nierlich, D. P. (1980-07-31). "Distinctive sequence of human mitochondrial ribosomal RNA genes". ...
The ATPC RNA motif is a conserved RNA structure found in certain cyanobacteria. It is apparently ubiquitous in Prochlorococcus ... Cis-regulatory RNA elements, Non-coding RNA, All stub articles, Molecular and cellular biology stubs). ... The RNA is always found within an operon encoding subunits of ATP synthase, and it is always located downstream of the gene ... Page for ATPC_RNA_motif at Rfam v t e (Articles with short description, Short description is different from Wikidata, Articles ...
Three lysM RNA motifs have been found. lysM-Actino motif RNAs are found in Actinomycetales. lysM-Prevotella motif RNAs are ... lysM RNA motifs are conserved RNA structures that were discovered by bioinformatics. Such bacterial motifs are defined by ... The lysM-TM7 RNA motif occurs only in the poorly understood phylum TM7. A part of the lysM-Actino motif is likely the Shine- ... Thus, these RNAs might regulate the downstream gene translationally. Weinberg Z, Lünse CE, Corbino KA, Ames TD, Nelson JW, Roth ...
... is a family of non-coding RNAs found on the R1 plasmid. In several groups of bacterial plasmids, antisense RNAs ... Page for CopA-like RNA at Rfam v t e (Articles with short description, Short description matches Wikidata, Antisense RNA, All ... These RNAs are characterised by a long hairpin structure interrupted by several unpaired nucleotides or bulged loops. In ... Gerhart E, Wagner H, Nordström K (1986). "Structural analysis of an RNA molecule involved in replication control of plasmid R1 ...
The RNA helicase database stores data (sequence, structures...) about RNA helicases. Helicase Jankowsky, Anja; Guenther Ulf- ... www.rnahelicase.org v t e (Biological databases, RNA, RNA-binding proteins, All stub articles, Biological database stubs). ... Peter; Jankowsky Eckhard (Jan 2011). "The RNA helicase database". Nucleic Acids Res. England. 39 (Database issue): D338-41. doi ...
The vertebrate telomerase RNAs have a 3' H/ACA snoRNA-like domain. TERC is a Long non-coding RNA (lncRNA) ranging in length ... Webb CJ, Zakian VA (August 2016). "Telomerase RNA is more than a DNA template". RNA Biology. 13 (8): 683-9. doi:10.1080/ ... Zaug AJ, Linger J, Cech TR (February 1996). "Method for determining RNA 3' ends and application to human telomerase RNA". ... Familial EntrezGene page for TERC Page for Vertebrate telomerase RNA at Rfam Page for Ciliate telomerase RNA at Rfam Page for ...
The proV RNA motif is a conserved RNA structure that was discovered by bioinformatics.proV motif RNAs are found in Pseudomonas ... proV RNAs are located upstream of genes that encode transporters. The substrate of these transporters is unknown, but ... However, it is also possible that they operate in trans as small RNAs. Weinberg Z, Lünse CE, Corbino KA, Ames TD, Nelson JW, ... This placement of proV RNAs is consistent with a function as a cis-regulatory elements. ...
The Latescibacteria, OD1, OP11, TM7 RNA motif (LOOT RNA motif) is a conserved RNA structure that was discovered by ... Indeed, the RNAs are upstream of multiple genes that encode non-homologous proteins. If all examples of the RNA were upstream ... the number of different gene classes found downstream of LOOT RNAs is large in comparison to established cis-regulatory RNAs. ... LOOT motif RNAs are found in multiple bacterial phyla that have only recently been discovered, and are currently not well ...
... rhizobial small RNA RcsR1 destabilizes the autoinducer synthase encoding mRNA sinI in Sinorhizobium meliloti". RNA Biology. 13 ...
The aspS RNA motif is a conserved RNA structure that was discovered by bioinformatics.aspS motifs are found in a specific ... It is possible that aspS RNAs are diverged examples of T-box RNAs, or they might implement a different structural solution to ... T-box leader RNAs detect low levels of various amino acids, and regulate genes in a cis-regulatory manner. Genes regulated by T ... aspS motif RNAs likely function as cis-regulatory elements, in view of their positions upstream of protein-coding genes. ...
... and so drum RNAs might be an example of DUF3800 RNA motifs. Drum RNAs contain a predicted kink turn. This particular example of ... Drum RNAs likely function in trans as small RNAs, and are often immediately followed on their 3′ ends by Rho-independent ... The drum RNA motif is a conserved RNA structure that was discovered by bioinformatics. Drum motifs are found in Bacillota, ... These genes can occur 5′ or 3′ relative to the RNA, and on the same or opposite DNA strand. Occasionally, these proteins match ...
doi:10.4161/rna.28648. PMC 4152365. PMID 24755616. v t e (GO template errors, Non-coding RNA, Cis-regulatory RNA elements, All ... "Translational control of small heat shock genes in mesophilic and thermophilic cyanobacteria by RNA thermometers". RNA Biology ... The first cyanobacterial RNA thermometer (RNAT) Hsp17 was found in the 5'UTR of Synechocystis heat shock hsp17 mRNA. Further ... Kortmann J, Sczodrok S, Rinnenthal J, Schwalbe H, Narberhaus F (April 2011). "Translation on demand by a simple RNA-based ...
The M23 RNA motif is a conserved RNA structure that was discovered by bioinformatics. M23 motif RNAs are found in Clostridia. ... and that the M23 RNA motif functions as a small RNA. An M23 RNA was observed to apparently bind a molecule in yeast extract. ... Most M23 RNAs are located upstream of M23 peptidase genes, but one is upstream of a gene whose product is NAD synthetase. ... M23 RNAs are generally located upstream of protein-coding genes, and therefore they might function as cis-regulatory elements. ...
The COG2827 RNA motif is a conserved RNA structure that was discovered by bioinformatics. COG2827 motifs are found in ... It is ambiguous whether COG2827 RNAs function as cis-regulatory elements or whether they operate in trans. Most COG2827 RNAs ... Although these genes are often located inside self-splicing introns, the COG2827 RNA motif is much smaller and simpler than ... "Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions". Nucleic Acids ...
The DUF3268 RNA motif is a conserved RNA structure that was discovered by bioinformatics. DUF3268 motifs are found in Bacillota ... Therefore, it is also possible that DUF3268 RNAs function as small RNAs. Predicted Rho-independent transcription terminators ... RNA. doi:10.1261/rna.079678.123. PMID 37311599. (Orphaned articles from December 2021, All orphaned articles, Articles lacking ... DUF3268 RNAs are consistently found in the 3′ untranslated regions (UTRs) of operons that include genes which encode the ...
The livK RNA motif describes a conserved RNA structure that was discovered using bioinformatics. The livK motif is detected ... Page for livK RNA at Rfam v t e (Articles with short description, Short description matches Wikidata, Orphaned articles from ... March 2010). "Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea and their metagenomes". Genome ... Cis-regulatory RNA elements, All stub articles, Molecular and cellular biology stubs). ...