Loading...
*  5S ribosomal RNA
In T. brucei, the causative agent of sleeping sickness, 5S rRNA interacts with two closely related RNA-binding proteins, P34 ... Binding between 5S rRNA and TFIIIA serves to both repress further transcription of the 5S RNA gene and stabilize the 5S RNA ... La protein is found in the nucleus in all eukaryotic organisms and associates with several types of RNAs transcribed by RNA pol ... In prokaryotes the 5S rRNA binds to the L5, L18 and L25 ribosomal proteins, whereas in eukaryotes 5S rRNA is only known to bind ...
*  Transfer-messenger RNA
In trans-translation, tmRNA and its associated proteins bind to bacterial ribosomes which have stalled in the middle of protein ... Transfer-messenger RNA (abbreviated tmRNA, also known as 10Sa RNA and by its genetic name SsrA) is a bacterial RNA molecule ... November 2007). "Semiautomated improvement of RNA alignments". RNA. 13 (11): 1850-9. doi:10.1261/rna.215407. PMC 2040093 . PMID ... In 2007, the crystal structure of the Thermus thermophilus TLD bound to the SmpB protein was obtained at 3 Å resolution. This ...
*  Three prime untranslated region
"RNA Binding Protein/RNA Element Interactions and the Control of Translation". Current Protein & Peptide Science. 13 (4): 294- ... and membrane proteins. The poly(A) tail contains binding sites for poly(A) binding proteins (PABPs). These proteins cooperate ... The most common structure is a stem-loop, which provides a scaffold for RNA binding proteins and non-coding RNAs that influence ... CPE-binding protein (CPEB) binds to CPEs in conjunction with a variety of other proteins in order to elicit different responses ...
*  Protein primary structure
The phosphorylated tyrosines are often used as "handles" by which proteins can bind to one another, whereas phosphorylation of ... but this usage is rare compared to the extremely common usage in reference to proteins. In RNA, which also has extensive ... Functionally, however, the acetylation of lysine residues is used to regulate the binding of proteins to nucleic acids. The ... Protein primary structure is the linear sequence of amino acids in a peptide or protein. By convention, the primary structure ...
*  RNA-binding protein
... identification of RNA-binding proteins has extended the number of RNA-binding proteins significantly RNA-binding protein Sam68 ... RNA-binding protein database starBase platform: a platform for decoding binding sites of RNA binding proteins (RBPs) from large ... intricacy of protein-RNA recognition of RRM as it entails RNA-RNA and protein-protein interactions in addition to protein-RNA ... RNA-binding proteins (often abbreviated as RBPs) are proteins that bind to the double or single stranded RNA in cells and ...
*  RNA-binding protein database
... a database for RNA-binding proteins. Protein-RNA interface: a database for Protein-RNA interface. Rice RNA Binding Protein ... Right now, RNA-binding protein database (RBPDB) contains 1171 RNA-binding proteins from Homo sapiens, Mus musculus, Drosophila ... The RNA-binding Proteins Database (RBPDB) is a biological database of RNA-binding protein specificities that includes ... RNA-binding proteins ( RBPs ) play critical role during this process. All RBPs can bind to RNA depends on different ...
*  Musashi rna binding protein 2
This gene encodes an RNA-binding protein that is a member of the Musashi protein family. The encoded protein is transcriptional ... Musashi RNA binding protein 2 is a protein that in humans is encoded by the MSI2 gene. There are two homologue genes found in ... As an RNA-binding protein, MSI2 is acts as a translational inhibitor. Through this molecular mechanism, MSI2 contributes in ... As with the rest of Musashi family RNA-binding proteins, MSI2 is linked to tissue stem cells and has an influence in asymmetric ...
*  Tia1 cytotoxic granule-associated rna binding protein
... is a protein that in humans is encoded by the TIA1 gene. The product ... Dember LM, Kim ND, Liu KQ, Anderson P (1996). "Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding ... TIA1 cytotoxic granule-associated RNA binding protein". Kawakami A, Tian Q, Streuli M, Poe M, Edelhoff S, Disteche CM, Anderson ... "Identification and functional outcome of mRNAs associated with RNA-binding protein TIA-1". Mol. Cell. Biol. 25 (21): 9520-31. ...
*  RNA binding protein, fox-1 homolog (c. elegans) 3
... (Rbfox3) is a protein that in humans is encoded by the RBFOX3 gene. It is ... "Entrez Gene: RNA binding protein, fox-1 homolog (C. elegans) 3". ...
*  RNA binding motif protein, Y-linked, family 1, member A1
2007). "RNA-binding motif protein 15 binds to the RNA transport element RTÉ and provides a direct link to the NXF1 export ... RNA-binding motif protein, Y chromosome, family 1 member A1/C is a protein that in humans is encoded by the RBMY1A1 gene. This ... 2000). "A mammalian germ cell-specific RNA-binding protein interacts with ubiquitously expressed proteins involved in splice ... "Entrez Gene: RBMY1A1 RNA binding motif protein, Y-linked, family 1, member A1". Lavery R, Glennon M, Houghton J, et al. (2007 ...
*  Alfalfa mosaic virus coat protein binding (CPB) RNA
The Alfalfa mosaic virus (AMV) coat protein binding (CPB) RNA is an RNA element which is found in the 3' UTR of the genome. AMV ... "Efficient translation of alfamovirus RNAs requires the binding of coat protein dimers to the 3' termini of the viral RNAs". J ... This family contains at least two coat protein binding sites which are thought to be essential for efficient RNA translation. ... Page for Alfalfa mosaic virus coat protein binding (CPB) RNA at Rfam. ...
*  DoRiNA
... is a database of transcriptome-wide binding site data for RNA binding proteins and microRNAs. microRNAs RNA binding ... a database of RNA interactions in post-transcriptional regulation". Nucleic Acids Res. England. 40 (1): D180-6. doi:10.1093/nar ... proteins Anders, Gerd; Mackowiak Sebastian D; Jens Marvin; Maaskola Jonas; Kuntzagk Andreas; Rajewsky Nikolaus; Landthaler ...
*  SYNCRIP
Kim JH, Paek KY, Ha SH, Cho S, Choi K, Kim CS, Ryu SH, Jang SK (September 2004). "A cellular RNA-binding protein enhances ... Lau PP, Chang BH, Chan L (April 2001). "Two-hybrid cloning identifies an RNA-binding protein, GRY-RBP, as a component of apobec ... A cytoplasmic RNA-binding protein". The Journal of Biological Chemistry. 277 (28): 25233-8. doi:10.1074/jbc.M202556200. PMID ... Synaptotagmin binding, cytoplasmic RNA interacting protein, also known as Heterogeneous nuclear ribonucleoprotein Q is a ...
*  Polycomb recruitment in X chromosome inactivation
"Systematic discovery of Xist RNA binding proteins". Cell. 161 (2): 404-16. doi:10.1016/j.cell.2015.03.025. PMC 4425988 . PMID ... It is possible that several mechanisms recruit PRC2 together, including Xist RNA, an adaptor protein, chromatin changes, RNA ... Zhao, J; Sun, BK; Erwin, JA; Song, JJ; Lee, JT (31 October 2008). "Polycomb proteins targeted by a short repeat RNA to the ... Biochemical studies have also shown that PRC2 binds the A-repeat of Xist RNA directly and with very high affinity (dissociation ...
*  RBFOX1
... also known as ataxin 2-binding protein 1 (A2BP1) or hexaribonucleotide-binding protein 1 (HRNBP1) or RNA binding protein, fox-1 ... Rbfox1 has an RNA recognition motif that is highly conserved among RNA-binding proteins. Rbfox1, and the related protein Rbfox2 ... A2BP1 ataxin 2-binding protein 1". Jin, Y. (2003-02-17). "A vertebrate RNA-binding protein Fox-1 regulates tissue-specific ... Shibata H, Huynh DP, Pulst SM (May 2000). "A novel protein with RNA-binding motifs interacts with ataxin-2". Human Molecular ...
*  TRIM21
Identification of novel Y RNA-binding proteins". Eur. J. Biochem. 267 (9): 2778-2789. doi:10.1046/j.1432-1327.2000.01298.x. ... Tripartite motif-containing protein 21 also known as E3 ubiquitin-protein ligase TRIM21 is a protein that in humans is encoded ... 1999). "mRNA and protein expression of SSA/Ro and SSB/La in human fetal cardiac myocytes cultured using a novel application of ... The TRIM motif includes three zinc-binding domains, a RING finger domain, a B-box type 1 and a B-box type 2 zinc finger, and a ...
*  Post-transcriptional regulation
Even though protein with DNA binding domains are more abundant than protein with RNA binding domains, a recent study by Cheadle ... analyses of protein-protein and protein-RNA interaction profiles have revealed ubiquitous interactions with RNA and protein ... In fact several key genes such as nanos are known to bind RNA but often their targets are unknown. Although RNA binding ... These proteins achieve these events thanks to a RNA recognition motif (RRM) that binds a specific sequence or secondary ...
*  RDBP
This protein bears similarity to nuclear RNA-binding proteins; however, it has not been demonstrated that this protein binds ... "The human RD protein is closely related to nuclear RNA-binding proteins and has been highly conserved". Gene. 90 (2): 299-302. ... RDBP RD RNA binding protein". Narita T, Yamaguchi Y, Yano K, Sugimoto S, Chanarat S, Wada T, Kim DK, Hasegawa J, Omori M, ... The protein encoded by this gene is part of a complex termed negative elongation factor (NELF) which represses RNA polymerase ...
*  ZFR
Zinc finger RNA binding protein is a protein in humans that is encoded by the ZFR gene. "Entrez Gene: Zinc finger RNA binding ...
*  Microprocessor complex
The complex is minimally composed of the ribonuclease enzyme Drosha and the RNA-binding protein DGCR8 (also known as Pasha) and ... a double-stranded RNA binding protein. (DGCR8 is the name used in mammalian genetics, abbreviated from "DiGeorge syndrome ... RNA. 22 (2): 175-83. doi:10.1261/rna.054684.115. PMID 26683315. Nguyen, TA; Jo, MH; Choi, YG; Park, J; Kwon, SC; Hohng, S; Kim ... Pri-miRNA substrates can be derived either from non-coding RNA genes or from introns. In the latter case, there is evidence ...
*  RBM8A
RNA-binding protein 8A is a protein that in humans is encoded by the RBM8A gene. This gene encodes a protein with a conserved ... "Entrez Gene: RBM8A RNA binding motif protein 8A". Mingot, J M; Kostka S; Kraft R; Hartmann E; Görlich D (July 2001). "Importin ... Zhao, X F; Nowak N J; Shows T B; Aplan P D (January 2000). "MAGOH interacts with a novel RNA-binding protein". Genomics. UNITED ... Zhao XF, Nowak NJ, Shows TB, Aplan PD (2000). "MAGOH interacts with a novel RNA-binding protein". Genomics. 63 (1): 145-8. doi: ...
*  STRBP
Spermatid perinuclear RNA-binding protein is a protein that in humans is encoded by the STRBP gene. GRCh38: Ensembl release 89 ... STRBP spermatid perinuclear RNA binding protein". Schumacher JM, Lee K, Edelhoff S, Braun RE (May 1995). "Spnr, a murine RNA- ... Coolidge CJ, Patton JG (March 2000). "A new double-stranded RNA-binding protein that interacts with PKR". Nucleic Acids ... Schumacher JM, Artzt K, Braun RE (July 1998). "Spermatid perinuclear ribonucleic acid-binding protein binds microtubules in ...
*  Ewing sarcoma breakpoint region 1
RNA-binding protein EWS is a protein that in humans is encoded by the EWSR1 gene on human chromosome 22. This gene encodes a ... "Cloning and mapping of a human RBP56 gene encoding a putative RNA binding protein similar to FUS/TLS and EWS proteins". ... "Tyrosine kinase Pyk2 mediates G-protein-coupled receptor regulation of the Ewing sarcoma RNA-binding protein EWS". Curr. Biol. ... codes for an RNA binding protein with novel regulatory domains". Oncogene. 9 (10): 3087-97. PMID 8084618. Maruyama K, Sugano S ...
*  MAGOH
Zhao XF, Nowak NJ, Shows TB, Aplan PD (2000). "MAGOH interacts with a novel RNA-binding protein". Genomics. 63 (1): 145-8. doi: ... "MAGOH interacts with a novel RNA-binding protein". Genomics. UNITED STATES. 63 (1): 145-8. doi:10.1006/geno.1999.6064. ISSN ... 2006). "Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA". Science. 313 (5795): 1968-72 ... Protein mago nashi homolog is a protein that in humans is encoded by the MAGOH gene. Drosophila that have mutations in their ...
*  Cell potency
Work with zebrafish and mammals suggest a further interplay between miRNA and RNA-binding proteins (RBPs) in determining ... Kedde M, Agami R (April 2008). "Interplay between microRNAs and RNA-binding proteins determines developmental processes". Cell ... Research on Caenorhabditis elegans suggests that multiple mechanisms including RNA regulation may play a role in maintaining ...
*  Phage display
Danner S, Belasco JG (November 2001). "T7 phage display: a novel genetic selection system for cloning RNA-binding proteins from ... Phage display is a laboratory technique for the study of protein-protein, protein-peptide, and protein-DNA interactions that ... The N2 domain binds to the F pilus during virion infection freeing the N1 domain which then interacts with a TolA protein on ... a gene encoding a protein of interest is inserted into a phage coat protein gene, causing the phage to "display" the protein on ...
*  TMEM63A
DUF4463 is cytosolic and distantly homologous to RNA-binding proteins. This domain can be used to determine the orientation of ... Transmembrane protein 63A is a protein that in humans is encoded by the TMEM63A gene. The mature human protein is approximately ... The 3' UTR is predicted to be bound by the regulatory element miR-9/9ab. The mature form of the human TMEM63A protein has 807 ... The protein has three isoforms. The mature protein is designated isoform CRA. The other two isoforms are X1 and X2, which are ...