The microbial genome data were extracted by identifying the bacterial specific ribosomal RNA, 16S rRNA. The researchers ... Stombaugh J, Widmann J, McDonald D, Knight R (June 2011). "Boulder ALignment Editor (ALE): a web-based RNA alignment tool". ... It is estimated that bacterial protein-coding genes are 360 times more abundant than human genes.[citation needed] Microbial ... The project also financed deep sequencing of bacterial 16S rRNA sequences amplified by polymerase chain reaction from human ...
"Association of RNA Biosignatures With Bacterial Infections in Febrile Infants Aged 60 Days or Younger". JAMA. 316 (8): 846-857 ... "Association of RNA Biosignatures With Bacterial Infections in Febrile Infants Aged 60 Days or Younger". JAMA. 316 (8): 846-857 ... These studies focused on distinguishing young febrile children with serious bacterial infections (SBIs) from those with viral ... 8/31/2023 RNA Biosignatures: A Paradigm Change for the Management of Febrile Infants 8/21/2015 - 4/30/2023 Maureen Andrew ...
Like minocycline, tigecycline binds to the bacterial 30S ribosome, blocking the entry of transfer RNA. This ultimately prevents ... The binding of tetracyclines to cellular dsRNA (double stranded RNA) may be an explanation for their wide range of effect. It ... They also bind to some extent the bacterial 50S ribosomal subunit and may alter the cytoplasmic membrane causing intracellular ... They are short-acting and passively diffuse through porin channels in the bacterial membrane. They inhibit protein synthesis by ...
... an RNA element common to bacterial antitermination systems, rRNA, and eukaryotic RNAs". RNA. 7 (8): 1165-1172. doi:10.1017/ ... In terms of structure, the T box RNA is highly conserved-especially in the stem I distal region. The stem I region forms an ... Usually found in gram-positive bacteria, the T box leader sequence is an RNA element that controls gene expression through the ... Gerdeman MS, Henkin TM, Hines JV (February 2003). "Solution structure of the Bacillus subtilis T-box antiterminator RNA: seven ...
A specificity factor is an amino acid sequence that mediates target recognition in RNA polymerase. An example is the sigma ... Is Similar to Bacterial 0 Factors" (PDF). The Journal of Biological Chemistry. 266 (39): 22671-22677. doi:10.1016/S0021-9258(18 ... Jang, Sei Heon; Jaehnings, Judith A. (1991). "The Yeast Mitochondrial RNA Polymerase Specificity Factor, MTF1, ... RNA polymerase is directed to a specialized set of promoters with a different consensus sequence. ...
The bacterial glycine riboswitch is an RNA element that can bind the amino acid glycine. Glycine riboswitches usually consist ... Kwon M, Strobel SA (January 2008). "Chemical basis of glycine riboswitch cooperativity". RNA. 14 (1): 25-34. doi:10.1261/rna. ... RNA. 18 (3): 496-507. doi:10.1261/rna.031286.111. PMC 3285937. PMID 22279151. Butler EB, Xiong Y, Wang J, Strobel SA (March ... Cis-regulatory RNA elements, Riboswitch, All stub articles, Molecular and cellular biology stubs). ...
V. cholerae has been used in discoveries of many bacterial small RNAs. Using sRNA-Seq and Northern blot candidate sRNAs were ... Vibrio regulatory RNA of OmpA, MicX sRNA, Vibrio cholerae ToxT activated RNAs, tfoR RNA, and VqmR sRNA. Cholera toxin Climate ... Natural transformation is a common bacterial adaptation for DNA transfer that employs numerous bacterial gene products. For a ... One of the candidates from this study, IGR7, was shown to be involved in carbon metabolism and later renamed MtlS RNA. Other ...
The bacterial sroE RNA gene is a non-coding RNA molecule of 90 nucleotides in length. sroE is found in several Enterobacterial ... Page for sroE RNA at Rfam v t e (Articles with short description, Short description matches Wikidata, Non-coding RNA, All stub ...
Bacterial small RNA Gimpel M, Preis H, Barth E, Gramzow L, Brantl S (October 13, 2012). "SR1-a small RNA with two remarkably ... It is a dual-function RNA which acts both as a protein-coding RNA and as a regulatory sRNA. SR1 RNA is involved in the ... In molecular biology, the SR1 RNA is a small RNA (sRNA) produced by species of Bacillus and closely related bacteria. ... v t e (RNA, Non-coding RNA, All stub articles, Molecular biology stubs). ...
The bacterial RtcB acts as a tRNA ligase, rejoining broken stem-loops in case of damage. It is also able to catalyse RNA ... Tanaka N, Shuman S (March 2011). "RtcB is the RNA ligase component of an Escherichia coli RNA repair operon". The Journal of ... RNA 2',3'-cyclic phosphate and 5'-OH ligase is a protein that in humans is encoded by the RTCB gene. It is found in the stress ... "Entrez Gene: RNA 2',3'-cyclic phosphate and 5'-OH ligase". Retrieved 2019-06-06. Jain S, Wheeler JR, Walters RW, Agrawal A, ...
The bacterial SroC RNA is a non-coding RNA gene of around 160 nucleotides in length. SroC is found in several enterobacterial ... Page for sroC RNA at Rfam v t e (Non-coding RNA, All stub articles, Molecular and cellular biology stubs). ... RNA sponges mediate cross talk between functionally related messenger RNAs". The EMBO Journal. 34 (11): 1436-8. doi:10.15252/ ... This RNA interacts with the Hfq protein. SroC acts as a 'sponge,' and base pairs with and regulates activity of the sRNA GcvB. ...
The DUF3800-I RNA motif was the first to be found, and it occurs in 5 bacterial phyla. Even when the analysis is restricted to ... Several DUF3800 RNA motifs are found in bacteria, and one occurs in archaea. Many DUF3800 RNA motifs are followed closely by ... DUF3800 RNA motifs refer to conserved RNA structures that were discovered by bioinformatics and are usually located nearby to ... This arrangement is typical of RNA and proteins that function as an RNA-protein complex, but could have other explanations. The ...
Bacillus cibi strain AIMST Ngme2 16S ribosomal RNA gene, partial sequence. NCBI. Bacillus cibi strain AIMST Nmae9 16S ribosomal ... Identification of bacterial endophytes isolated from eight Nepenthes species and their screening for cytokinin-like compounds. ... Bacillus cereus strain AIMST Nalbe1 16S ribosomal RNA gene, partial sequence. NCBI. Bacillus cereus strain AIMST Nalbe7 16S ... Bacillus cereus strain AIMST Nalbe8 16S ribosomal RNA gene, partial sequence. NCBI. Bacillus cereus strain AIMST Nalme2 16S ...
Yu, Diane; Breaker, Ronald R. (2020-04-28). "A bacterial riboswitch class senses xanthine and uric acid to regulate genes ... The NMT1 RNA motif is a conserved RNA structure that was discovered by bioinformatics. NMT1 motif RNAs are found in ... Indeed, the RNAs are upstream of multiple genes that encode non-homologous proteins. If all examples of the RNA were upstream ... The NMT1 motif RNA were thought to likely function as cis-regulatory elements, in view of their positions upstream of protein- ...
These homologs are present in purified phage particles of other phages, as well as bacterial genomes. The presence of c4 ... Later bioinformatics work uncovered an additional set of RNAs called ("c4-2" RNAs) that appear to function as c4 antisense RNAs ... The c4 antisense RNA is a non-coding RNA used by certain phages that infect bacteria. It was initially identified in the P1 and ... This structure overlaps an earlier family of predicted RNAs called IsrK, which was identified among numerous RNA molecules that ...
TFIIF (two subunits, RAP30 and RAP74, showing some similarity to bacterial sigma factors) and Pol II enter the complex together ... RNA Pol II matches complementary RNA nucleotides to the template DNA by Watson-Crick base pairing. These RNA nucleotides are ... RNA polymerase II holoenzyme is a form of eukaryotic RNA polymerase II that is recruited to the promoters of protein-coding ... This switches the RNA polymerase to start producing RNA. Finally it is essential for Nucleotide Excision Repair (NER) of ...
Bacterial Metabolism. Audrey Stevens (1932-2010). American biochemist at Oak Ridge National Laboratory, co-discoverer of RNA ... concerned with the function and biogenesis of non-coding RNA and the proteins that interact with RNA. Member Natl. Acad. Sci. ... USA Joan Steitz FRS (foreign associate) (b. 1941). American biochemist at Yale, best known for her work on RNA. Member Natl. ... Roger D. Kornberg (b. 1947). American biochemist at Stanford, who won the Nobel Prize in Chemistry (2006) for studies on RNA ...
Retrotransposons are transposons that first transcribe the moving gene sequence into RNA. This RNA then gets retro-transcribed ... Here she discovered that mu transposons behave similarly to transposons and retrotransposons involved with bacterial resistance ...
Differential interaction of a fluorescent probe with the guanosine nucleotide complexes of bacterial elongation factor Tu". ... DNA Guanosine triphosphate Nucleoside Nucleotide Oligonucleotide RNA Crane, Laura J; Miller, David Lee (1974). "Guanosine ...
Bacterial small RNA Hfq binding sRNA Ramos CG, da Costa PJ, Döring G, Leitão JH (2012). "The Novel Cis-Encoded Small RNA h2cR ... In molecular biology, the h2cR sRNA is a small RNA produced by species of the bacterial genus Burkholderia. It binds to the ... Orphaned articles from November 2020, All orphaned articles, RNA, Non-coding RNA). ...
2005 David Bartel for his discoveries on the repertoire of catalytic RNA and the analysis of micro RNA genes and their targets ... 1969 William B. Wood [Wikidata] for his genetic dissection of the mechanism of assembly of the bacterial virus particle and ... Cech for the astonishing discovery of RNA-catalyzed self-splicing of introns and the analysis of the chemistry of RNA-catalyzed ... Their work produced RNA enzymes with novel specificities, while illuminating our view of natural selection. 1995 Daniel E. ...
Pancreatic ribonuclease also degrades bacterial RNA in the ruminant small intestine as a source of nitrogen. During grazing, ...
March 2007). "Suitability of partial 16S ribosomal RNA gene sequence analysis for the identification of dangerous bacterial ... Rose, L. J.; O'Connell, H. (2009-05-01). "UV Light Inactivation of Bacterial Biothreat Agents". Applied and Environmental ...
Uncoating and release of the viral genomic RNA into the cytoplasm. VPg is removed from the viral RNA, which is then translated ... Sapovirus cannot be treated with antibiotics because it is not a bacterial infection. Treatments include symptom support such ... hundreds of primers have been designed in order to specifically target and amplify RNA-dependent RNA polymerase. This can be ... Subgenomic RNA translation gives rise to the capsid protein and VP2. Assembly of new virus particles and release by cell lysis ...
An Hfq binding sRNA is an sRNA that binds the bacterial RNA binding protein called Hfq. A number of bacterial small RNAs which ... DicF RNA DsrA RNA FnrS RNA GadY RNA GcvB RNA IsrJ RNA MicA RNA / SraD RNA MicC RNA MicF RNA OmrA RNA / OmrB RNA / RygA RNA / ... RNA OxyS RNA Qrr RNA RmA RNA RprA RNA RybB RNA RydC RNA RyeB RNA CyaR RNA RyeF RyhB RNA SgrS RNA Spot 42 RNA SraH RNA SraJ RNA ... De Lay, N.; Schu, D. J.; Gottesman, S. (2013). "Bacterial Small RNA-based Negative Regulation: Hfq and Its Accomplices". ...
... a genetic approach to the identification of bacterial RNA thermometers: application to Pseudomonas aeruginosa". RNA. 20 (12): ... doi:10.1261/rna.044354.114. ISSN 1469-9001. PMC 4238360. PMID 25336583. (Pages using gallery with unknown parameters, RNA). ... Pseudomonas sRNA are non-coding RNAs (ncRNA) that were predicted by the bioinformatic program SRNApredict2. This program ... elegans sRNA Mycobacterium tuberculosis sRNA Bacteroides thetaiotaomicron sRNA NrsZ small RNA AsponA antisense RNA Repression ...
Numerous bacterial small non-coding RNAs have been identified to play regulatory functions. Some can regulate the virulence ... High-throughput RNA structure probing identified many thermoresponsive RNA structures. Intergenic RNA thermometer Ryan KJ; Ray ... Superantigens, bacterial adhesions, and the actions of Yops (which are bacterial proteins once thought to be "Yersinia outer ... "Global discovery of small RNAs in Yersinia pseudotuberculosis identifies Yersinia-specific small, noncoding RNAs required for ...
"Division inhibition gene dicF of Escherichia coli reveals a widespread group of prophage sequences in bacterial genomes". ... DicF RNA is a non-coding RNA that is an antisense inhibitor of cell division gene ftsZ. DicF is bound by the Hfq protein which ... Page for DicF RNA at Rfam v t e (Articles with short description, Short description matches Wikidata, GO template errors, Non- ... Tétart F, Bouché JP (March 1992). "Regulation of the expression of the cell-cycle gene ftsZ by DicF antisense RNA. Division ...
Bacteroidales-2 RNAs are relatively large compared to most other bacterial sRNAs, averaging just over 400 nucleotides. Despite ... The Bacteroidales-2 RNA motif is a conserved RNA structure that was discovered by bioinformatics. Bacteroidales-2 motifs are ... Bacteroidales-2 RNAs often occur adjacent to large regions that do not appear to encode proteins. A possible weak association ... Bacteroidales-2 RNAs likely function in trans as sRNAs. ... this large size, Bacteriodales-2 RNAs exhibit a relatively ...
2008). "A widespread riboswitch candidate that controls bacterial genes involved in molybdenum cofactor and tungsten cofactor ... The Moco RNA motif is a conserved RNA structure that is presumed to be a riboswitch that binds molybdenum cofactor or the ... Page for Moco_RNA_motif at Rfam v t e (Cis-regulatory RNA elements, Riboswitch, All stub articles, Molecular and cellular ... complex structure of the RNA and the failure to detect a protein involved in the regulation suggest that the Moco RNA motif ...