Also, RNA-dependent RNA polymerase is part of the RNA interference pathway in many organisms. Messenger RNA (mRNA) is the RNA ... According to the length of RNA chain, RNA includes small RNA and long RNA. Usually, small RNAs are shorter than 200 nt in ... Biology portal Biomolecular structure RNA virus DNA History of RNA Biology List of RNA Biologists RNA Society Macromolecule RNA ... RNA can also be methylated. Like DNA, RNA can carry genetic information. RNA viruses have genomes composed of RNA that encodes ...
Page for SraJ RNA at Rfam v t e (Articles with short description, Short description matches Wikidata, Non-coding RNA, All stub ... "Targeted decay of a regulatory small RNA by an adaptor protein for RNase E and counteraction by an anti-adaptor RNA". Genes & ... GlmZ (formally known as SraJ) is a small non-coding RNA (ncRNA). It is the functional product of a gene which is not translated ... 2001). "Novel small RNA-encoding genes in the intergenic regions of Escherichia coli". Curr. Biol. 11 (12): 941-950. doi: ...
Diribarne G, Bensaude O (2009). "7SK RNA, a non-coding RNA regulating P-TEFb, a general transcription factor". RNA Biology. 6 ( ... 2): 122-8. doi:10.4161/rna.6.2.8115. PMID 19246988. Peterlin BM, Brogie JE, Price DH (2012). "7SK snRNA: a noncoding RNA that ... Yang Z, Zhu Q, Luo K, Zhou Q (November 2001). "The 7SK small nuclear RNA inhibits the CDK9/cyclin T1 kinase to control ... This release leads to a conformational change in 7SK RNA and the ejection of HEXIM. hnRNPs stabilize the complex lacking P-TEFb ...
RNA is usually responsible for making protein. The process of making RNA from DNA is called transcription. RNA uses a similar ... transcription of DNA into RNA and translation of RNA into protein. After DNA is transcribed into RNA, the molecule is known as ... CRAC integrates genomic locations and local coverage to enable splice junction or fusion RNA predictions directly from RNA-seq ... end of the RNA, generating a functional messenger RNA. This system allows the use of operons - collections of protein-coding ...
In addition to mRNA transcripts, RNA-Seq can look at different populations of RNA to include total RNA, small RNA, such as ... The cellular RNA is selected based on the desired size range. For small RNA targets, such as miRNA, the RNA is isolated through ... Total sample RNA output: Because the same amount of RNA is extracted from each sample, samples with more total RNA will have ... RNA selection/depletion: To analyze signals of interest, the isolated RNA can either be kept as is, filtered for RNA with 3' ...
Although RNA is fragile, some ancient RNAs may have evolved the ability to methylate other RNAs to protect them. If the RNA ... The RNA world hypothesis places RNA at center-stage when life originated. The RNA world hypothesis is supported by the ... doi:10.1261/rna.548807. PMC 1894930. PMID 17586759. Horning DP, Joyce GF (August 2016). "Amplification of RNA by an RNA ... Atkins JF, Gesteland RF, Cech T (2006). The RNA world: the nature of modern RNA suggests a prebiotic RNA world. Plainview, N.Y ...
... is the leading peer-reviewed scientific journal in the field of ribonucleic acid (RNA) research. It is indexed for ... "RNA Biology". 2018 Journal Citation Reports. Web of Science (Science ed.). Thomson Reuters. 2018. Official website (Use dmy ... This initiative is a collaboration between the journal and the consortium that produces the Rfam database of RNA families. The ... of families of RNA molecules in December 2008 and requires contributing authors to also submit a draft article on the RNA ...
The bacterial sroH RNA is a non-coding RNA that is 160 nucleotides in length. The function of this family is unknown. An SroH ... Page for sroH RNA at Rfam v t e (Non-coding RNA, All stub articles, Molecular and cellular biology stubs). ... Hobbs EC, Astarita JL, Storz G (January 2010). "Small RNAs and small proteins involved in resistance to cell envelope stress ...
... is a non-coding RNA that is antisense to the RNA-IN non-coding RNA. Transposition of insertion sequence IS10 is ... RNA-OUT consists of a stem-loop domain topped by a flexibly paired loop; the 5′ end of the target molecule, RNA-IN, is ... Page for RNA-OUT at Rfam v t e (Non-coding RNA, All stub articles, Molecular and cellular biology stubs). ... end of the target RNA and a loop in the anti-sense RNA". Journal of Molecular Biology. 210 (3): 561-572. doi:10.1016/0022-2836( ...
The PrrF RNAs are analogs of the RyhB RNA, which is encoded by enteric bacteria. Expression of the PrrF RNAs is repressed by ... Page for PrrF RNA at Rfam v t e (Non-coding RNA, All stub articles, Molecular and cellular biology stubs). ... The PrrF RNAs are small non-coding RNAs involved in iron homeostasis and are encoded by all Pseudomonas species. ... HrrF RNA NrrF RNA Aggregatibacter iron-regulated sRNA Wilderman PJ, Sowa NA, FitzGerald DJ, FitzGerald PC, Gottesman S, Ochsner ...
This small RNA was shown to be bound by the Hfq protein. This RNA has been renamed as CyaR for (cyclic AMP-activated RNA). It ... The CyaR RNA (formerly known as RyeE RNA) non-coding RNA was identified in a large scale screen of Escherichia coli and was ... RydB RNA RyhB RNA RyeB RNA Wassarman, KM; Repoila F; Rosenow C; Storz G; Gottesman S (2001). "Identification of novel small ... Page for RyeE RNA at Rfam v t e (Non-coding RNA, All stub articles, Molecular and cellular biology stubs). ...
The gcvB RNA gene encodes a small non-coding RNA involved in the regulation of a number of amino acid transport systems as well ... Transcription of the GcvB RNA is activated by the adjacent GcvA gene and repressed by the GcvR gene. A deletion of GcvB RNA ... Busi F, Le Derout J, Cerciat M, Régnier P, Hajnsdorf E (July 2010). "Is the secondary putative RNA-RNA interaction site ... Similar results were recently shown for the DsrA RNA. The physiological relevance of polymerisation is not known. The GcvB RNA ...
Cyanobacterial RNA thermometers Intergenic RNA thermometer Neisseria RNA thermometers Lig RNA thermometer Narberhaus F, ... An RNA thermometer (or RNA thermosensor) is a temperature-sensitive non-coding RNA molecule which regulates gene expression. ... Atkins JF, Gesteland RF, Cech T (2006). The RNA world: the nature of modern RNA suggests a prebiotic RNA world. Plainview, N.Y ... RNA Biology. 7 (1): 84-89. doi:10.4161/rna.7.1.10501. PMID 20009504. Breaker RR (January 2010). "RNA switches out in the cold ...
Page for sroD RNA at Rfam v t e (Articles with short description, Short description matches Wikidata, Non-coding RNA, All stub ... The bacterial sroD RNA gene is a non-coding RNA of 90 nucleotides in length. sroD is found in several Enterobacterial species ...
I. Structures of sar RNA and its target, ant mRNA". RNA. 3 (2): 141-156. PMC 1369469. PMID 9042942. Page for sar RNA at Rfam v ... Sar RNA is an antisense non-coding RNA that is partly responsible for the negative regulation of antirepressor synthesis during ... Structurally, Sar RNA forms two stem-loops. Schaefer KL, McClure WR (February 1997). "Antisense RNA control of gene expression ... The target of Sar RNA is ant mRNA. ... t e (GO template errors, Antisense RNA, All stub articles, ...
C0299 RNA C0343 RNA C0465 RNA Tjaden B, Saxena RM, Stolyar S, Haynor DR, Kolker E, Rosenow C (2002). "Transcriptome analysis of ... The C0719 RNA is a bacterial non-coding RNA of 222 nucleotides in length that is found between the yghK and glcB genes in the ... Page for C0719 RNA at Rfam v t e (Non-coding RNA, All stub articles, Molecular and cellular biology stubs). ... This non-coding RNA was originally identified in E.coli using high-density oligonucleotide probe arrays (microarray.) The ...
Page for sroE RNA at Rfam v t e (Articles with short description, Short description matches Wikidata, Non-coding RNA, All stub ... The bacterial sroE RNA gene is a non-coding RNA molecule of 90 nucleotides in length. sroE is found in several Enterobacterial ...
The SL1 RNA is involved in trans-splicing, which is a form of RNA processing. The acquisition of a spliced leader from an SL ... Page for SL1 RNA at Rfam v t e (GO template errors, Non-coding RNA, All stub articles, Molecular and cellular biology stubs). ... This family represents the SL1 RNA. The gene encoding SL1 RNA is commonly, but not always, located in the spacer region between ... Dassanayake RS, Chandrasekharan NV, Karunanayake EH (May 2001). "Trans-spliced leader RNA, 5S-rRNA genes and novel variant ...
RyfA RNA RydB RNA RydC RNA MicA RNA Wassarman, KM; Repoila F; Rosenow C; Storz G; Gottesman S (2001). "Identification of novel ... Page for RybB RNA at Rfam v t e (Non-coding RNA, All stub articles, Molecular and cellular biology stubs). ... RybB is a small non-coding RNA was identified in a large scale screen of Escherichia coli. The function of this short RNA has ... Desnoyers G, Massé E (2012). "Noncanonical repression of translation initiation through small RNA recruitment of the RNA ...
The GlmY RNA (formally known as tke1) family consists of a number of bacterial RNA genes of around 167 bases in length. The ... Page for tke1 RNA at Rfam v t e (Non-coding RNA, All stub articles, Molecular and cellular biology stubs). ... "Targeted decay of a regulatory small RNA by an adaptor protein for RNase E and counteraction by an anti-adaptor RNA". Genes & ... Reichenbach B, Maes A, Kalamorz F, Hajnsdorf E, Görke B (2008). "The small RNA GlmY acts upstream of the sRNA GlmZ in the ...
... is the nanoscale folding of RNA, enabling the RNA to create particular shapes to organize these molecules. It is a ... RNA origami is synthesized by enzymes that fold RNA into particular shapes. The folding of the RNA occurs in living cells under ... RNA origami is represented as a DNA gene, which within cells can be transcribed into RNA by RNA polymerase. Many computer ... Once encoded as a synthetic DNA gene, adding RNA polymerase resulted in the formation of RNA origami. Observation of RNA was ...
RNA pol II) binding and non-coding RNA transcription. The level of RNA pol II-enhancer interaction and RNA transcript formation ... Enhancer RNAs (eRNAs) represent a class of relatively long non-coding RNA molecules (50-2000 nucleotides) transcribed from the ... As a result, polyA+ 1D-eRNAs may represent a mixed group of true enhancer-templated RNAs and multiexonic RNAs. Bidirectional ... RNA-seq) and chromatin immunoprecipitation-sequencing (ChIP-seq). RNA-seq permits the direct identification of eRNAs by ...
The RtT RNA (repeat structure of the tyrT operon) is a RNA element that is released from the tyrT operon of Escherichia coli. ... Page for RtT RNA at Rfam v t e (Cis-regulatory RNA elements, All stub articles, Molecular and cellular biology stubs). ... which lacks RtT RNA and has an alternate starvation response. Bösl M, Kersten H (November 1991). "A novel RNA product of the ...
Ahlquist P (May 2002). "RNA-dependent RNA polymerases, viruses, and RNA silencing". Science. 296 (5571): 1270-3. Bibcode: ... "Double-stranded RNA binding may be a general plant RNA viral strategy to suppress RNA silencing". Journal of Virology. 80 (12 ... RNAi is an RNA-dependent gene silencing process that is controlled by RISC and is initiated by short double-stranded RNA ... RNA interference (RNAi) is a biological process in which RNA molecules are involved in sequence-specific suppression of gene ...
... is a small non-coding RNA found in Vibrio cholerae and related bacteria. MtlS is found in the mannitol operon, which ... Page for MtlS RNA at Rfam v t e (Orphaned articles from November 2017, All orphaned articles, Non-coding RNA, All stub articles ... The MtlS RNA is expressed when the bacteria are grown on carbon sources other than mannitol. MtlS is responsible for the post- ... "The Vibrio cholerae Mannitol Transporter is Regulated Posttranscriptionally by the MtlS Small Regulatory RNA". Journal of ...
In enzymology, a RNA uridylyltransferase (EC 2.7.7.52) is an enzyme that catalyzes the chemical reaction UTP + RNAn ⇌ {\ ... end of an RNA primer". Nucleic Acids Research. 9 (11): 2433-53. doi:10.1093/nar/9.11.2433. PMC 326863. PMID 6269049. Portal: ... RNA uridylyltransferase. Other names in common use include terminal uridylyltransferase, and TUT. As of late 2007, 8 structures ...
indica). αr45C RNA species are 147-153 nt long (Table 1) and share a well defined common secondary structure (Figure 1). All of ... αr45 is a family of bacterial small non-coding RNAs with representatives in a broad group of α-proteobacteria from the order ... Will S, Reiche K, Hofacker IL, Stadler PF, Backofen R (2007). "Inferring Noncoding RNA Families and Classes by Means of Genome- ... Recent deep sequencing-based characterization of the small RNA fraction (50-350 nt) of S. meliloti 2011 further confirmed the ...
This RNA was identified in a computational screen of E. coli. The function of this RNA is unknown. IS061 RNA IS128 RNA Tjaden B ... The IS102 RNA is a non-coding RNA that is found in bacteria such as Shigella flexneri and Escherichia coli. The RNA is 208 ... Page for IS102 RNA at Rfam v t e (Articles with short description, Short description matches Wikidata, Non-coding RNA, All stub ...
... is a non-coding RNA that is an antisense inhibitor of cell division gene ftsZ. DicF is bound by the Hfq protein which ... Page for DicF RNA at Rfam v t e (Articles with short description, Short description matches Wikidata, GO template errors, Non- ... Tétart F, Bouché JP (March 1992). "Regulation of the expression of the cell-cycle gene ftsZ by DicF antisense RNA. Division ... Faubladier M, Cam K, Bouché JP (April 1990). "Escherichia coli cell division inhibitor DicF-RNA of the dicB operon. Evidence ...
The IS128 RNA is a non-coding RNA found in bacteria such as Escherichia coli and Shigella flexneri. The RNA is 209 nucleotides ... The function of this RNA is unknown. IS061 RNA IS102 RNA Tjaden B, Saxena RM, Stolyar S, Haynor DR, Kolker E, Rosenow C ( ... Page for IS128 RNA at Rfam v t e (Non-coding RNA, All stub articles, Molecular and cellular biology stubs). ... The IS128 RNA was initially identified in a computational screen of the E. coli genome. ...