Although protein-protein interaction maps containing several thousand binary interactions are now available for several species ... "Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and ... such as those among proteins, also known as protein-protein interactions, PPIs; or between small molecules and proteins[1]) but ... Protein function prediction[edit]. Protein interaction networks have been used to predict the function of proteins of unknown ...
Gopinath, S.C.B. (2009). "Mapping of RNA-protein interactions". Analytica Chimica Acta. 636 (2): 117-128. doi:10.1016/j.aca. ... It can thus be used to probe the interactions involved with the secondary structure and other binding interactions of RNA and ...
Gopinath SCB (2009). "Mapping of RNA-protein interactions". Analytica Chimica Acta. 636 (2): 117-128. doi:10.1016/j.aca.2009.01 ... ISBN 0-935702-49-0. Yu E, Fabris D (2003). "Direct probing of RNA structures and RNA-Protein interactions in the HIV-1 ... Karaduman R, Fabrizio P, Hartmuth K, Urlaub H, Luhrmann R (2006). "RNA structure and RNA-protein interactions in purified yeast ... Nucleotides may be protected from DMS modification by base pairing, tertiary contacts, or protein-RNA interactions. This can be ...
Protein-protein interaction Interactome data; Genetic regulatory relationships; Details of intra- and inter-specific sequence ... Genetic maps, markers and polymorphisms; The C. elegans physical map; Gene expression profiles (stage, tissue and cell) from ... The protein products of gene are created by translating the CDS sequences. Each unique protein sequence is given a unique ... Examples of the protein identifier names for each species in WormBase is given in the table, below. It is possible for two CDS ...
Structural consequences and effects on protein-protein interactions". The Journal of Biological Chemistry. 276 (44): 41399-406 ... Meza JE, Brzovic PS, King MC, Klevit RE (Feb 1999). "Mapping the functional domains of BRCA1. Interaction of the ring finger ... Structural consequences and effects on protein-protein interactions". The Journal of Biological Chemistry. 276 (44): 41399-406 ... protein homodimerization activity. • kinase binding. • RNA binding. • protein heterodimerization activity. • ubiquitin-protein ...
"Large-scale mapping of human protein-protein interactions by mass spectrometry". Mol. Syst. Biol. 3: 89. doi:10.1038/msb4100134 ... "Molecular interaction between human tumor marker protein p150, the largest subunit of eIF3, and intermediate filament protein ... Eukaryotic translation initiation factor 3 subunit A (eIF3a) is a protein that in humans is encoded by the EIF3A gene.[5][6][7] ... protein binding. • structural molecule activity. • translation initiation factor activity. • receptor tyrosine kinase binding. ...
"Large-scale mapping of human protein-protein interactions by mass spectrometry". Molecular Systems Biology. 3 (1): 89. doi: ... Interactions[edit]. MYO6 has been shown to interact with GIPC1[6][7] and DAB2.[8][9] ... protein complex. • apical part of cell. • clathrin-coated vesicle membrane. • ruffle. • cytosol. • extracellular exosome. • ... protein binding. • minus-end directed microfilament motor activity. • ADP binding. • actin binding. • nucleotide binding. • ...
"Large-scale mapping of human protein-protein interactions by mass spectrometry". Molecular Systems Biology. 3 (1): 89. doi: ... "A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration". Cell. 125 (4): ... The protein encoded by this gene is a member of the keratin gene family. As a type I hair keratin, it is an acidic protein ... Keratin, type I cuticular Ha1 is a protein that in humans is encoded by the KRT31 gene. ...
"Large-scale mapping of human protein-protein interactions by mass spectrometry". Molecular Systems Biology. 3 (1): 89. doi: ... GTP-dependent protein binding. • GTPase activity. • enzyme binding. • protein binding. • thioesterase binding. • protein kinase ... protein phosphorylation. • Rho protein signal transduction. • regulation of lamellipodium assembly. • Rac protein signal ... "Interaction of Nck-associated protein 1 with activated GTP-binding protein Rac". The Biochemical Journal. 322 (3): 873-8. doi: ...
"Large-scale mapping of human protein-protein interactions by mass spectrometry". Molecular Systems Biology. 3 (1): 89. doi: ... This protein contains ankyrin repeats involved in protein-protein interactions. Mutations in this gene have been linked to bare ... DNA-binding protein RFXANK is a protein that in humans is encoded by the RFXANK gene.[5][6][7] ... The protein encoded by this gene, along with regulatory factor X-associated protein and regulatory factor-5, forms a complex ...
"Large-scale mapping of human protein-protein interactions by mass spectrometry". Molecular Systems Biology. 3: 89. PMC 1847948 ... protein dimerization activity. • transcription factor activity, sequence-specific DNA binding. • protein complex binding. • ... "Interactions of the DNA mismatch repair proteins MLH1 and MSH2 with c-MYC and MAX". Oncogene. 22 (6): 819-25. PMID 12584560. ... protein complex. • nucleolus. • nucleus. • nuclear chromatin. Biological process. • Notch signaling pathway. • chromatin ...
Protein Interaction Map of Drosophila melanogaster. [Cover paper] Science November 2, 2003; 10.1126. Bader JS, Deem MW, Hammond ... A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. [Cover paper] Nature Feb 10, 2000; Vol. ... CuraGen focused on how the proteins encoded in a genome function together, and published the first global proteomic maps of a ... Bader JS, Chaudhuri A. Rothberg JM, and Chant J. Gaining confidence in high-throughput protein interaction networks. Nature ...
"Large-scale mapping of human protein-protein interactions by mass spectrometry". Mol. Syst. Biol. 3 (1): 89. doi:10.1038/ ... 1999). "Decreased brain protein levels of cytochrome oxidase subunits in Alzheimer's disease and in hereditary spinocerebellar ... Sirchia R, Luparello C (2007). "Mid-region parathyroid hormone-related protein (PTHrP) and gene expression of MDA-MB231 breast ... q21 by FISH and radiation hybrid mapping". Cytogenet Cell Genet. 83 (3-4): 226-7. doi:10.1159/000015185. PMID 10072584.. ...
"Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173-8. Bibcode:2005Natur. ... Phosphorylated TFEB is then retained in the cytosol by interaction with 14-3-3 proteins.[18][20][19] These kinases are tuned to ... "A helix-loop-helix protein related to the immunoglobulin E box-binding proteins". Molecular and Cellular Biology. 10 (8): 4384- ... Transcription factor EB is a protein that in humans is encoded by the TFEB gene.[5][6] ...
"Large-scale mapping of human protein-protein interactions by mass spectrometry". Mol. Syst. Biol. 3 (1): 89. doi:10.1038/ ... Dermicidin, also known as proteolysis-inducing factor (PIF), is a protein that in humans is encoded by the DCD gene.[3][4] It ... protein binding. • hydrolase activity. • RNA binding. Cellular component. • extracellular exosome. • extracellular matrix. • ... Dermicidin is a secreted protein that is subsequently processed into mature peptides of distinct biological activities. The C- ...
"Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173-8. doi:10.1038/ ... This protein-related article is a stub. You can help Wikipedia by expanding it.. *v ... "Process outgrowth of oligodendrocytes is promoted by interaction of fyn kinase with the cytoskeletal protein tau". The Journal ... "Process outgrowth of oligodendrocytes is promoted by interaction of fyn kinase with the cytoskeletal protein tau". The Journal ...
"Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173-8. doi:10.1038/ ... This protein-related article is a stub. You can help Wikipedia by expanding it. *v ... RefSeq (protein). NP_001153800. NP_001153801. NP_115674. NP_001153800.1. NP_001153801.1. ... Synaptotagmin-3 is a protein that in humans is encoded by the SYT3 gene.[5][6] ...
"Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173-8. doi:10.1038/ ... Zinc finger protein Aiolos also known as Ikaros family zinc finger protein 3 is a protein that in humans is encoded by the ... protein binding. • protein heterodimerization activity. • nucleic acid binding. • transcription regulatory region DNA binding. ... This gene encodes a member of the Ikaros family of zinc-finger proteins. Three members of this protein family (Ikaros, Aiolos ...
2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173-8. doi:10.1038 ... protein binding. • extracellular matrix constituent conferring elasticity. • identical protein binding. • integrin binding ... Elastin microfibril interfacer 1 (EMILIN-1) is a protein that in humans is encoded by the EMILIN1 gene.[5] It is the best ... 2000). "Elastic fiber proteins in the glomerular mesangium in vivo and in cell culture". Kidney Int. 58 (4): 1588-602. doi: ...
2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173-8. doi:10.1038 ... Protein SSX4 is a protein that in humans is encoded by the SSX4 gene.[5] ... This protein-related article is a stub. You can help Wikipedia by expanding it.. *v ... These proteins may function as transcriptional repressors. They are also capable of eliciting spontaneously humoral and ...
2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173-8. doi:10.1038 ... protein binding. • single-stranded RNA binding. • RNA binding. • double-stranded RNA binding. • hydrolase activity. • ATP ... Since LGP2 lacks CARD domains, its effect on downstream antiviral signaling is likely due to interaction with dsRNA viral ... The protein encoded by the gene DHX58 is known as LGP2 (Laboratory of Genetics and Physiology 2).[5][7][8] ...
2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173-8. doi:10.1038 ... The protein encoded by this gene is a member of the keratin gene family. As a type II hair keratin, it is a basic protein which ... Keratin, type II cuticular Hb1 is a protein that in humans is encoded by the KRT81 gene.[5][6][7] ... protein binding. • structural molecule activity. Cellular component. • intermediate filament. • keratin filament. • Q14325730. ...
"Mapping of interaction domains between human repair proteins ERCC1 and XPF". Nucleic Acids Research. 26 (18): 4146-52. doi: ... XPF provides the endonuclease active site and is involved in DNA binding and additional protein-protein interactions. The ERCC4 ... In the ERCC1-XPF heterodimer, ERCC1 mediates DNA- and protein-protein interactions. ... During NER, the ERCC1 protein interacts with the XPA protein to coordinate DNA and protein binding. Mammalian cells with mutant ...
ISBN 0-8247-0562-9. Pelletier J, Sidhu S (August 2001). "Mapping protein-protein interactions with combinatorial biology ... This could involve the protein being fused to the M13 minor coat protein pIII, with the gene encoding this protein being held ... These large numbers of peptides are generated and screened by physically linking a gene encoding a protein and a copy of this ... In biotechnology, combinatorial biology is the creation of a large number of compounds (usually proteins or peptides) through ...
Genomewide mapping of in vivo protein-DNA interactions. Science. 316:1497-1502. Chen X et al. 2008. Integration of external ... The first ChIA-PET was developed by Fullwood et al.. (2009) to generate a map of the interactions between chromatin bound by ... It is a genome-wide strategy for finding de novo long-range interactions between DNA elements bound by protein factors. ... ChIA-PET is an unbiased way to analyze interactions and higher-order chromatin structures because it can detect interactions ...
It stays associated with the membrane through protein-protein interactions of itself and other membrane associated proteins, ... Lamin A/C gene and a related sequence map to human chromosomes 1q12.1-q23 and 10. Somat. Cell Mol. Genet. March 1993, 19 (2): ... endoplasmic reticulum unfolded protein response. · protein localization to nucleus. · sterol regulatory element binding protein ... activation of signaling protein activity involved in unfolded protein response. · mitotic nuclear envelope disassembly. · ...