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*  Jonathan Rothberg
Protein Interaction Map of Drosophila melanogaster. [Cover paper] Science November 2, 2003; 10.1126. Bader JS, Deem MW, Hammond ... A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. [Cover paper] Nature Feb 10, 2000; Vol. ... CuraGen focused on how the proteins encoded in a genome function together, and published the first global proteomic maps of a ... Bader JS, Chaudhuri A. Rothberg JM, and Chant J. Gaining confidence in high-throughput protein interaction networks. Nature ...
*  Kethoxal
Gopinath, S.C.B. (2009). "Mapping of RNA-protein interactions". Analytica Chimica Acta. 636 (2): 117-128. doi:10.1016/j.aca. ... It can thus be used to probe the interactions involved with the secondary structure and other binding interactions of RNA and ...
*  Nucleic acid structure determination
Gopinath SCB (2009). "Mapping of RNA-protein interactions". Analytica Chimica Acta. 636 (2): 117-128. doi:10.1016/j.aca.2009.01 ... ISBN 0-935702-49-0. Yu E, Fabris D (2003). "Direct probing of RNA structures and RNA-Protein interactions in the HIV-1 ... Karaduman R, Fabrizio P, Hartmuth K, Urlaub H, Luhrmann R (2006). "RNA structure and RNA-protein interactions in purified yeast ... Nucleotides may be protected from DMS modification by base pairing, tertiary contacts, or protein-RNA interactions. This can be ...
*  ORFeome
Uetz P, Rajagopala SV, Dong YA, Haas J (Oct 2004). "From ORFeomes to protein interaction maps in viruses". Genome Research. 14 ... ORFeomes are used for the study of protein-protein interactions, protein microarrays, the study of antigens, and other fields ... "Evolutionarily conserved herpesviral protein interaction networks". PLoS Pathogens. 5 (9): e1000570. doi:10.1371/journal.ppat. ... "The binary protein interactome of Treponema pallidum--the syphilis spirochete". PLOS ONE. 3 (5): e2292. doi:10.1371/journal. ...
*  Epstein-Barr virus
"Epstein-Barr virus and virus human protein interaction maps". Proceedings of the National Academy of Sciences of the United ... The DNA is surrounded by a protein nucleocapsid. This nucleocapsid is surrounded by a tegument made of protein, which in turn ... To enter epithelial cells, viral protein BMRF-2 interacts with cellular β1 integrins. Then, viral protein gH/gL interacts with ... The set of proteins and RNAs produced in Latency III transforms the B cell into a proliferating blast (also known as B cell ...
*  KIAA1704
Kim, Jognhwan (2005). "Genome- wide mapping of DNA- protein interactions in eukaryotes". University of Austin Texas. "Ensembl ... than the normal human protein and is mostly conserved within its orthologous proteins. KIAA1704 has protein orthologs extending ... KIAA1704, also known as LSR7 (lipopolysaccharide-specific response protein 7), is a protein that in humans is encoded by the ... Negative Orientation Nuclear Fragile X Mental Retardation Protein Interacting Protein 1 (NUFIp1) shows RNA-binding activity ...
*  Interolog
"Protein Interaction Mapping in C. Elegans Using Proteins Involved in Vulval Development". Science. 287 (5450): 116-122. doi: ... are two different interacting dog proteins. Then the interaction between A and B is an interolog of the interaction between A' ... Protein-Protein Interologs and Protein-DNA Regulogs". Genome Research. 14 (6): 1107-1118. doi:10.1101/gr.1774904. PMC 419789 . ... An interolog is a conserved interaction between a pair of proteins which have interacting homologs in another organism. The ...
*  Lambda phage
Rajagopala, S. V.; Casjens, S.; Uetz, P. (2011). "The protein interaction map of bacteriophage lambda". BMC Microbiology. 11: ... O protein binds the ori site, and P protein binds the DnaB subunit of the host replication machinery as well as binding O. This ... The cIII protein acts to protect the cII protein from proteolysis by FtsH (a membrane-bound essential E. coli protease) by ... Bacteriophage Lambda binds to an E. coli cell by means of its J protein in the tail tip. The J protein interacts with the ...
*  Rong Li
Stowers Institute for Medical Research (13 December 2007). "Rong Li Lab reports protein interactions of MAP kinase signaling ... Slaughter BD, Unruh JR, Li R. "Examination of dynamic protein interactions in yeast using live-cell fluorescence fluctuation ... Li was also one of the first to demonstrate the critical in vivo role for the Arp2/3 complex and WASP family proteins in the ... Activation of the CDC42 effector N-WASP by the Shigella flexneri IcsA protein promotes actin nucleation by Arp2/3 complex and ...
*  BioPlex
"New study maps protein interactions for a quarter of the human genome". phys.org/. phys.org. Retrieved 24 May 2017. Huttlin EL ... Determining the interaction partners of poorly characterized proteins can provide clues to the function of those proteins, and ... BioPlex (Biophysical interactions of ORFeome-based complexes) is an open access resource for studying protein-protein ... Those bait proteins interact with other proteins, and then the complexes of the bait and "prey" proteins are isolated by ...
*  LMO7
Kim J, Bhinge AA, Morgan XC, Iyer VR (2005). "Mapping DNA-protein interactions in large genomes by sequence tag analysis of ... Members of the FBX protein family are involved in protein-protein interactions. The encoded protein may be involved in protein- ... LIM domain only protein 7 is a protein that in humans is encoded by the LMO7 gene. This gene encodes a protein containing a ... protein interactions. Multiple alternative splice variants have been described but their full-length sequences have not been ...
*  JPH2
Kim J, Bhinge AA, Morgan XC, Iyer VR (2005). "Mapping DNA-protein interactions in large genomes by sequence tag analysis of ... The protein encoded by this gene is a component of junctional complexes and is composed of a C-terminal hydrophobic segment ... The JPH2 protein product plays a critical role in maintaining the spacing a geometry of the cardiac dyad - the space between ... Junctophilin 2, also known as JPH2, is a protein which in humans is encoded by the JPH2 gene. Alternative splicing has been ...
*  HOXA3
Kim J, Bhinge AA, Morgan XC, Iyer VR (January 2005). "Mapping DNA-protein interactions in large genomes by sequence tag ... Homeobox protein Hox-A3 is a protein that in humans is encoded by the HOXA3 gene. In vertebrates, the genes encoding the class ... Expression of these proteins is spatially and temporally regulated during embryonic development. This gene is part of the A ... HOXA3 protein, human at the US National Library of Medicine Medical Subject Headings (MeSH) This article incorporates text from ...
*  SOAT2
Kim J; Bhinge AA; Morgan XC; Iyer VR (2005). "Mapping DNA-protein interactions in large genomes by sequence tag analysis of ... 2001). "High-Resolution Transcript Map of the Region Spanning D12S1629 and D12S312 at Chromosome 12q13: Triple A Syndrome- ...
*  DNA repair and recombination protein RAD54-like
Kim J, Bhinge AA, Morgan XC, Iyer VR (2005). "Mapping DNA-protein interactions in large genomes by sequence tag analysis of ... DNA repair and recombination protein RAD54-like is a protein that in humans is encoded by the RAD54L gene. The protein encoded ... 1997). "Interaction of human recombination proteins Rad51 and Rad54". Nucleic Acids Res. 25 (20): 4106-10. doi:10.1093/nar/ ... 1997). "Interaction of human recombination proteins Rad51 and Rad54". Nucleic Acids Res. 25 (20): 4106-10. doi:10.1093/nar/ ...
*  TRIM55
Kim J, Bhinge AA, Morgan XC, Iyer VR (2005). "Mapping DNA-protein interactions in large genomes by sequence tag analysis of ... The protein encoded by this gene contains a RING zinc finger, a motif known to be involved in protein-protein interactions. ... Tripartite motif-containing protein 55 is a protein that in humans is encoded by the TRIM55 gene. ... This protein associates transiently with microtubules, myosin, and titin during muscle sarcomere assembly. It may act as a ...
*  Acrosin
Kim J, Bhinge AA, Morgan XC, Iyer VR (Jan 2005). "Mapping DNA-protein interactions in large genomes by sequence tag analysis of ... This structural feature is consistent with the secondary binding protein hypothesis, as charge-charge interactions would ... Zheng, X; Geiger, M; Ecke, S (1994). "Inhibition of acrosin by protein C inhibitor and localization of protein C inhibitor to ... Acrosin regulation has been found to occur through Protein C inhibitor (PCI). PCI is present in the male reproductive tract at ...
*  PBK (gene)
2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173-8. doi:10.1038 ... Kim J, Bhinge AA, Morgan XC, Iyer VR (2005). "Mapping DNA-protein interactions in large genomes by sequence tag analysis of ... 2005). "A human protein-protein interaction network: a resource for annotating the proteome". Cell. 122 (6): 957-68. doi: ... Yuryev A, Wennogle LP (2003). "Novel raf kinase protein-protein interactions found by an exhaustive yeast two-hybrid analysis ...
*  CSTF3
2007). "Large-scale mapping of human protein-protein interactions by mass spectrometry". Mol. Syst. Biol. 3 (1): 89. doi: ... 2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173-8. doi:10.1038 ... Kim J, Bhinge AA, Morgan XC, Iyer VR (2005). "Mapping DNA-protein interactions in large genomes by sequence tag analysis of ... Emili A, Schieltz DM, Yates JR, Hartwell LH (2001). "Dynamic interaction of DNA damage checkpoint protein Rad53 with chromatin ...
*  FANCD2
Gordon SM, Buchwald M (Jul 2003). "Fanconi anemia protein complex: mapping protein interactions in the yeast 2- and 3-hybrid ... Gordon SM, Buchwald M (Jul 2003). "Fanconi anemia protein complex: mapping protein interactions in the yeast 2- and 3-hybrid ... This protein is monoubiquitinated in response to DNA damage, resulting in its localization to nuclear foci with other proteins ... Fanconi anemia group D2 protein is a protein that in humans is encoded by the FANCD2 gene. The Fanconi anemia complementation ...
*  FANCF
Gordon SM, Buchwald M (July 2003). "Fanconi anemia protein complex: mapping protein interactions in the yeast 2- and 3-hybrid ... Gordon SM, Buchwald M (July 2003). "Fanconi anemia protein complex: mapping protein interactions in the yeast 2- and 3-hybrid ... The FA core complex is composed of eight proteins (FANCA, -B, -C, -E, -F, -G, -L and -M). FANCF stabilizes the interaction ... FoxF1 protein also interacts with the FA protein core and induces its binding to chromatin to promote DNA repair. DNA damage ...
*  FANCE
Gordon SM, Buchwald M (Jul 2003). "Fanconi anemia protein complex: mapping protein interactions in the yeast 2- and 3-hybrid ... Gordon SM, Buchwald M (2003). "Fanconi anemia protein complex: mapping protein interactions in the yeast 2- and 3-hybrid ... Fanconi anemia group E protein is a protein that in humans is encoded by the FANCE gene. The Fanconi anemia complementation ... "Direct interactions of the five known Fanconi anaemia proteins suggest a common functional pathway". Hum. Mol. Genet. 10 (4): ...
*  COP9 signalosome
Fang, L.; Kaake, R. M.; Patel, V. R.; Yang, Y.; Baldi, P.; Huang, L. (2012). "Mapping the Protein Interaction Network of the ... It catalyses the hydrolysis of NEDD8 protein from the cullin subunit of Cullin-RING ubiquitin ligases (CRL). Therefore, it is ... COP9 (Constitutive photomorphogenesis 9) signalosome (CSN) is a protein complex with isopeptidase activity. ...
*  GHITM
Li S, Wang L, Berman M, Kong YY, Dorf ME (Sep 2011). "Mapping a dynamic innate immunity protein interaction network regulating ... GHITM may be involved in tumor metastasis through its interactions with the Bcl-2 family proteins to regulate apoptosis. Its ... Growth hormone-inducible transmembrane protein (GHITM), also known as transmembrane BAX inhibitor motif containing protein 5 ( ... or alternative splicing may account for the protein's observed localization to the ER. GHITM is a mitochondrial protein and a ...
*  Edward Marcotte
"Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human ... "Detecting Protein Function & Protein-Protein Interactions from Genome Sequences". Science. 285 (5428): 751-753. doi:10.1126/ ... Ramani, A.K.; Li, Z.; Hart, G. T.; Carlson, M. W.; Boutz, D.; Marcotte, E. M. (2008). "A map of human protein interactions ... Marcotte's contributions include developing early versions of the human protein interaction network and mapping of >7,000 human ...
*  Phage display
... characterize small molecules-protein interactions and map protein-protein interactions. Users can use three dimensional ... Phage display is a laboratory technique for the study of protein-protein, protein-peptide, and protein-DNA interactions that ... Explanation of "Protein interaction mapping" from The Wellcome Trust Lunder M, Bratkovic T, Doljak B, Kreft S, Urleb U, ... Directed evolution protein-protein interactions PelB leader sequence Competing techniques: Two-hybrid system mRNA display ...