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*  Mitochondrial DNA
... make it useful for studying the evolutionary relationships-phylogeny-of organisms. Biologists can determine and then compare ... can thus be used to simultaneously estimate phylogenies that contain both closely and distantly related species Mitochondrial ... "Combining multiple autosomal introns for studying shallow phylogeny and taxonomy of Laurasiatherian mammals: Application to the ... genetic relationships of individuals or groups within a species and also for identifying and quantifying the phylogeny ( ...
*  Inferring horizontal gene transfer
Even when there is no doubt in the input trees, the conflicting phylogenies can be the result of evolutionary processes other ... Lerat, E; Daubin, V; Moran, N. A. (2003). "From gene trees to organismal phylogeny in prokaryotes: The case of the gamma- ... For instance, the conflicting phylogenies can be the result of events not accounted for by the model, such as unrecognized ... Similarly, in the presence of incomplete lineage sorting, explicit phylogeny methods can erroneously infer HGT events. That is ...
*  Ancestral reconstruction
Any attempt at ancestral reconstruction begins with a phylogeny. In general, a phylogeny is a tree-based hypothesis about the ... If the rate of evolution for a specific character accelerates on a branch of the phylogeny, then the amount of evolution that ... In order to recover the state of a given ancestral node in the phylogeny (call this node α {\displaystyle \alpha } ) by maximum ... Phylogenies relating 67 different protein families were generated by a distance-based clustering method (unweighted pair group ...
*  Phylogenesis
... tries to reproduce phylogeny in its classification Phylogenesis ≠ Phylogeny; Phylogenesis ≠ (≈) Phylogenetics; Phylogenesis ≠ ... The result of these analyses is a phylogeny (also known as a phylogenetic tree) - a diagrammatic hypothesis about the history ... Phylogeny Phylogenetics Taxonomy Cladistics Ontogeny Evolution Mayr E. (2005). Das ist Evolution. München: Goldmann. ISBN 3-442 ... The degree to which taxonomies depend on phylogenies (or classification depends on evolutionary development) differs depending ...
*  Phylogenetic network
Phylogeny programs, some of which compute phylogenetic networks List of programs for phylogenetic network reconstruction, ...
*  Molecular phylogenetics
... indicating that different genes within the same organism can have different phylogenies. In addition, molecular phylogenies are ... Molecular phylogeny uses such data to build a "relationship tree" that shows the probable evolution of various organisms. With ... Inferring phylogenies. Sinauer Associates Incorporated. ISBN 0-87893-177-5. Hillis, D. M. & Moritz, C. 1996. Molecular ... Another application of molecular phylogeny is in DNA barcoding, wherein the species of an individual organism is identified ...
*  Palaeolagus
ISBN 1-84028-152-9. Haaramo, Mikko (2008-03-11). "Mikko's Phylogeny archive". Retrieved 2009-02-01. Paleontology portal. ...
*  Harvestman phylogeny
Research on harvestman phylogeny (that is, the phylogenetic tree) is in a state of flux. While some families are clearly ... There is not yet a proposed phylogeny for the whole group of Laniatores, although some families have been researched in this ... The Dyspnoi are probably the best studied harvestman group regarding phylogeny. They are clearly monophyletic, and divided into ... doi:10.1111/j.1096-0031.1990.tb00523.x. Gonzalo Giribet; Adriano B. Kury (2007). "Phylogeny and Biogeography". In Ricardo Pinto ...
*  Perfect phylogeny
Character state matrices An example of a character matrix that can be depicted as a perfect phylogeny Perfect phylogeny is a ... One such example is that of Incomplete Directed Perfect Phylogeny. This concept involves utilizing perfect phylogenies with ... Perfect phylogeny is a term used in computational phylogenetics to denote a phylogenetic tree in which all internal nodes may ... Perfect phylogeny is also used in the construction of haplotype maps. By utilizing the concepts and algorithms described in ...
*  Phylogeny (psychoanalysis)
Phylogeny in psychoanalysis is the study of the whole family or species of an organism in order to better understand the pre- ... The term phylogeny derives from the Greek terms phyle (φυλή) and phylon (φῦλον), denoting "tribe" and "race"; and the term ... phylogeny might shed more light on the pre-history of an organism. Liddell, Henry George; Robert Scott (1901). A Greek-English ...
*  Mikko's Phylogeny Archive
Haaramo, Mikko (2007). "Mikko's Phylogeny Archive". Retrieved 4 October 2007. Mikko's Phylogeny Archive. ... Mikko's Phylogeny Archive is an amateur paleontology website maintained by Mikko Haaramo, a student at the University of ...
*  Phylogeny of pterosaurs
Pterosauria @ Mikko's Phylogeny Archive Kellner, A. W. A., (2003): Pterosaur phylogeny and comments on the evolutionary history ... This phylogeny of pterosaurs entails the various phylogenetic trees used to classify pterosaurs throughout the years and ... Pterosaur phylogeny is currently highly contested and several hypotheses are presented below. The matrix includes 19 pterosaur ... A paper focusing on the pterosaur phylogeny (Andres, in press) will be published in an upcoming book named "The Pterosauria". ...
*  Angiosperm Phylogeny Website
The Angiosperm Phylogeny Website (or APweb) is a well-known web site dedicated to research on angiosperm phylogeny and taxonomy ... Angiosperm Phylogeny Website hosted by the Missouri Botanical Garden Website Note: This is a selected list of the more ... Peter F. Stevens is a member of the Angiosperm Phylogeny Group (APG). The taxonomy presented is broadly based on the work of ... "The angiosperm phylogeny Website - a tool for reference and teaching in a time of change". Proceedings of the American Society ...
*  Ontogeny and Phylogeny (book)
... phylogeny). Ontogeny and Phylogeny is Gould's first technical book. He wrote that Ernst Mayr had suggested in passing that he ... Ontogeny and Phylogeny is a 1977 book on evolution by Stephen Jay Gould, in which the author explores the relationship between ... "the one with the most impact is probably Ontogeny and Phylogeny ... to say that this work is a hallmark in this area of ... Ontogeny and Phylogeny. Cambridge, MA: Belknap Press. pp. vii-viii. ISBN 0-674-63940-5. Also ISBN 0-674-63941-3 (paperback) ...
*  Distance matrices in phylogeny
Phylogeny estimation using distance methods has produced a number of controversies. UPGMA assumes an ultrametric tree (a tree ... Distance matrices are used in phylogeny as non-parametric distance methods and were originally applied to phenetic data using a ... Error resulting from any characteristic of that branch that might confound phylogeny (stochastic variability, change in ... Felsenstein J. (2004). Inferring Phylogenies Sinauer Associates: Sunderland, MA. Fitch WM; Margoliash E (1967). "Construction ...
*  Least squares inference in phylogeny
... generates a phylogenetic tree based on an observed matrix of pairwise genetic distances ... William H.E. Day, Computational complexity of inferring phylogenies from dissimilarity matrices, Bulletin of Mathematical ...
*  Biology
Widely varied approaches to biology generate information about phylogeny. These include the comparisons of DNA sequences, a ... ISBN 978-0-300-00952-1. "Phylogeny". Bio-medicine.org. 2007-11-11. Retrieved 2013-10-02. Montévil, M; Mossio, M; Pocheville, A ... distributed Internet project containing information about phylogeny and biodiversity. The Study of Biology Using the Biological ... species from which it descended-together with its genealogical relationship to every other species is known as its phylogeny. ...
*  Herrerasaurus
Gauthier, J.A., Cannatella, D., Queiroz, K., Kluge, A.G., and Rowe, T. (1989). "Tetrapod phylogeny". In Fernholm, K. Bremer, & ... a reassessment of dinosaur origin and phylogeny". Journal of Systematic Palaeontology. 8 (3): 371-425. doi:10.1080/ ...
*  Carnivoramorpha
"Phylogeny of the Carnivora: Basal Relationships Among the Carnivoramorphans, and Assessment of the Position of 'Miacoidea' ... 2005). "Mikko's Phylogeny Archive Carnivoramorpha - Carnivores and relatives." Retrieved February 17, 2007, from: [5] Stiles, ... 7] Wyss, A. R. & Flynn, J. J. (1993). "A Phylogenetic Analysis and Definition of the Carnivora." in Mammal Phylogeny - ... Fox Phylogeny. Vertebrate Evolution - Fall 2005, The Evergreen State College, Olympia, WA. [6] Wesley-Hunt, Gina D. (2006). " ...
*  Albanerpetontidae
10.7287/peerj.preprints.1596v1 Mikko's Phylogeny Archive [1] Haaramo, Mikko (2007). "†Allocaudata - albanerpentonids". ...
*  Coleorrhyncha
Brozç, 2007) (Szwedo, 2011) Hennig, Willi (1981). Insect Phylogeny. New York: Wiley. ISBN 978-0-471-27848-1. Translated by A. C ... but based on studies of their morphological similarities as well as molecular phylogeny are now considered as a sister group of ... Studies on Hemipteran Phylogeny. Lanham, Maryland: Entomological Society of America. pp. 9-30. ISBN 978-0-938522-54-6. ... Shcherbakov, Dmitry E. (2005). "Fossils versus molecules and cladistics: controversies over the Hemiptera phylogeny". 12th ...
*  Solanum diphyllum
"Solanum phylogeny". Solanaceae Source, Natural History Museum. 2004. Retrieved May 15, 2011. Media related to Solanum diphyllum ...
*  Solanum
Many of the subgenera and sections might not be valid; they are used here provisionally as the phylogeny of this genus is not ... "Solanum Phylogeny". Solanaceae Source. Natural History Museum. Retrieved 2009-11-01. Tepe, E. J.; Ridley, G.; Bohs, L. (2012 ...
*  Phylogenetic nomenclature
Goodrich also opined that the name Reptilia should be abandoned once the phylogeny of the reptiles would be better known. The ... Pages 103-155 in Michael J. Benton (ed.): The Phylogeny and Classification of the Tetrapods, Volume 1: Amphibians, Reptiles, ... In botany, the Angiosperm Phylogeny Group, responsible for the currently most widely used classification of flowering plants, ... ISBN 0-231-11012-X Angiosperm Phylogeny Group (1998). "An ordinal classification for the families of flowering plants". Annals ...
*  Thelodonti
Mikko's Phylogeny Archive (February 26, 2006). "Thelodonti - thelodonts". A phylogeny.. ... Wilson Mark VH, Märss Tiiu (2009). "Thelodont phylogeny revisited, with inclusion of key scale-based taxa" (PDF). Estonian ...