Loading...
*  Multilocus sequence typing
Spratt, Brian G (1999). "Multilocus sequence typing: molecular typing of bacterial pathogens in an era of rapid DNA sequencing ... Multilocus sequence typing (MLST) is a technique in molecular biology for the typing of multiple loci. The procedure ... "Multilocus sequence typing of Streptococcus pyogenes and the relationships between emm type and clone". Infect Immun. 69 (4): ... "Molecular Typing of Selected Enterococcus faecalis Isolates: Pilot Study Using Multilocus Sequence Typing and Pulsed-Field Gel ...
*  Haemophilus influenzae
... they can be classified by multilocus sequence typing. The pathogenesis of H. influenzae infections is not completely understood ... "Haemophilus influenzae type B (HiB)". Health Topics A to Z. Retrieved 2011-03-29. Jin Z, Romero-Steiner S, Carlone GM, Robbins ... The sequencing method used was whole-genome shotgun, which was completed and published in Science in 1995. Unencapsulated H. ... H. influenzae was the first free-living organism to have its entire genome sequenced. Completed by Craig Venter and his team at ...
*  Global microbial identifier
2012). "Short read sequence typing (SRST):multi-locus sequence types from short reads". BMC Genomics. 13: 388. doi:10.1186/1471 ... 2012). "Multilocus sequence typing of total-genome-sequenced bacteria". J Clin Microbiol. 50 (4): 1355-1366. doi:10.1128/JCM. ... Human Microbiome Project Whole genome sequencing DNA profiling Personal Genome Project List of sequenced eukaryotic genomes ... started genome sequencing projects for sequencing the infectious agents collections they had in their biobanks. Thereby ...
*  Mark Achtman
"Multilocus Sequence Typing as a Replacement for Serotyping in Salmonella enterica". PLOS Pathogens. 8 (6): e1002776. doi: ... Achtman was one of the inventors of multilocus sequence typing. His research has been funded by the Biotechnology and ... "Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms ... 2003). "Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella ...
*  Cronobacter malonaticus
"Multilocus sequence typing of Cronobacter sakazakii and Cronobacter malonaticus reveals stable clonal structures with clinical ... "Diversity of the Cronobacter Genus as Revealed by Multilocus Sequence Typing". Journal of Clinical Microbiology. 50 (9): 3031- ... Its type strain is CDC 1058-77T (=LMG 23826T =DSM 18702T). Iversen, C.; Mullane, N.; McCardell, B.; Tall, B. D.; Lehner, A.; ... LPSN Cronobacter malonaticus at the Encyclopedia of Life Type strain of Cronobacter malonaticus at BacDive - the Bacterial ...
*  Salmonella
... multilocus sequence typing, and, increasingly, whole genome sequencing. Historically, salmonellae have been clinically ... "Multilocus Sequence Typing as a Replacement for Serotyping in Salmonella enterica". PLOS Pathogens. 8 (6): e1002776. doi: ... multilocus sequence typing, and multiplex-PCR-based methods. Salmonella species are facultative intracellular pathogens. A ... rev., as the type and only species of the genus Salmonella". Int. J. Syst. Bacteriol. 37: 465-468. Reeves MW, Evins GM, Heiba ...
*  Cronobacter sakazakii
However multilocus sequence typing has shown that the majority of neonatal meningitis cases in the past 30 years, across 6 ... 2009). "Multilocus sequence typing of Cronobacter sakazakii and Cronobacter malonaticus reveals stable clonal structures with ... multilocus sequence typing (MLST), f-AFLP, automated ribotyping. This resulted in the classification of E. sakazakii as a new ... "Diversity of the Cronobacter genus as revealed by multilocus sequence typing". Journal of Clinical Microbiology. 50 (9): 3031-9 ...
*  Gordon Dougan
"Multilocus Sequence Typing as a Replacement for Serotyping in Salmonella enterica". PLOS Pathogens. 8 (6): e1002776. doi: ...
*  Borrelia lusitaniae
"Fine-Scale Phylogeographic Structure of Borrelia lusitaniae Revealed by Multilocus Sequence Typing". PLoS ONE. 3 (12): 1-13. ... B. lusitaniae is tick-borne; he type strain is PotiB2. It can be pathogenic, being involved in cases of Lyme borreliosis. A ... by 16S Ribosomal DNA Sequence Analysis". International Journal of Systematic Bacteriology. 47 (4): 921-925. doi:10.1099/ ...
*  Niyaz Ahmed
Ahmed's group has developed a widely used multilocus sequence typing scheme for species level identification of pathogenic ... "Multilocus sequence typing method for identification and genotypic classification of pathogenic Leptospira species". Annals of ... Ahmed has also worked extensively on the nomenclature, taxonomic status, genome sequencing and functional characterization of ...
*  Lactobacillus paracasei
Genetic diversity for the different L. paracasei genomes was assessed using multilocus sequence typing (MLST) and amplified ... Maiden, Martin; Jane Bygraves; Edward Feil (January 6, 1998). "Multilocus sequence typing: A portable approach to the ... 16S RNA sequence homology has confirmed the relatedness between these species. Historically, the difference between ... There is an approximately 90% sequence identity between casei, paracasei, and rhamnosus. However, there are some differential ...
*  Burkholderia mallei
... multilocus enzyme electrophoresis, random amplified polymorphic DNA analysis, and multilocus sequence typing. Comparing the DNA ... Multilocus sequence typing has revealed that B. mallei most likely evolved from a B. pseudomallei clone reduction. About 1000 B ... It is closely related to B. pseudomallei, and by multilocus sequence typing it is a subspecies of B. pseudomallei. B. mallei ... Mallein test Godoy D, Randle G, Simpson AJ, Aanensen DM, Pitt TL, Kinoshita R, Spratt BG (2003). "Multilocus sequence typing ...
*  Streptococcus dysgalactiae
The identification of S.dysgalactiae to the subspecies level is most reliably performed by MultiLocus Sequence Typing (MLST). ... Beall, B.; Facklam, R.; Thompson, T. (1996-04-01). "Sequencing emm-specific PCR products for routine and accurate typing of ... To date, more than 100 SDSE emm-types have been described (CDC Strep Lab). The prevailing emm-types vary in different ... The most widely employed method is emm-typing. The emm-gene encodes the M-protein, a major virulence factor in both S.pyogenes ...
*  Verticillium nonalfalfae
... and multilocus sequence typing of Verticillium nonalfalfae from the invasive Ailanthus altissima and other hosts". ... "Identification and Differentiation of Verticillium Species with PCR Markers and Sequencing of ITS Region." Plant and Animal ...
*  Microbial phylogenetics
Comparative genomics Phylogenomics Multilocus sequence typing Bacterial taxonomy Computational phylogenetics History of ...
*  Streptococcus uberis
February 2006). "First insights into the evolution of Streptococcus uberis: a multilocus sequence typing scheme that enables ... Type strain of Streptococcus uberis at BacDive - the Bacterial Diversity Metadatabase Biology portal. ...
*  Streptomyces griseus
DNA homology and multilocus sequence typing. A whole genome sequence was recently carried out on the IFO 13350 strain of S. ... Use of multilocus sequence analysis for streptomycete systematics". International Journal of Systematic and Evolutionary ... 16S rRNA gene sequence data have been used to recognise the related strains, and are called S. griseus 16S rRNA gene clade. The ... The strains of this species are now known to be rich sources of antibiotics and to produce 32 different structural types of ...
*  Campylobacter concisus
"Multilocus Sequence Typing Methods for the Emerging Campylobacter Species C. hyointestinalis, C. lanienae, C. sputorum, C. ... Type strain of Campylobacter concisus at BacDive - the Bacterial Diversity Metadatabase. ...
*  Pseudomonas amygdali
"Multilocus Sequence Typing of Pseudomonas syringae Sensu Lato Confirms Previously Described Genomospecies and Permits Rapid ... Jul 2000). "Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence". Int J Syst Evol Microbiol. 50 (4): 1563- ... Type strain of Pseudomonas amygdali at BacDive - the Bacterial Diversity Metadatabase. ...
*  Lyme disease microbiology
... plasmid transfers in Borrelia burgdorferi sensu stricto revealed by three-way genome comparisons and multilocus sequence typing ... Bunikis J, Garpmo U, Tsao J, Berglund J, Fish D, Barbour AG (2004). "Sequence typing reveals extensive strain diversity of the ... The genome of B. burgdorferi (B31 strain) was the third microbial genome ever to be sequenced, following the sequencing of both ... "Delineation of Borrelia burgdorferi sensu lato species by multilocus sequence analysis and confirmation of the delineation of ...
*  Cronobacter
However, multilocus sequence typing has shown that the majority of neonatal meningitis cases in the past 30 years, across 6 ... 2009). "Multilocus sequence typing of Cronobacter sakazakii and Cronobacter malonaticus reveals stable clonal structures with ... 2012). "Diversity of the Cronobacter genus as revealed by multi locus sequence typing". J Clin Microbiol. 50 (9): 3031-3039. ... The genome of one strain of Cronobacter sakazakii (BAA-894) has been sequenced and annotated. According to multilocus sequence ...
*  Pantoea agglomerans
For the precise identification of Pantoea agglomerans non-culture based methods such as Multilocus sequence typing (MLST) or ... "Phylogeny and Identification of Pantoea Species and Typing of Pantoea agglomerans Strains by Multilocus Gene Sequencing". ... This has led to confusion surrounding its pathogenicity as molecular studies based on DNA sequencing have disproved the ... Type strain of Pantoea agglomerans at BacDive - the Bacterial Diversity Metadatabase. ...
*  Diagnostic microbiology
Multilocus sequence typing is the sequencing of many single loci to diagnose an organism by referencing back to a database of ... Single-locus sequence typing is the sequencing a single locus of an organism, about 1000 base pairs long, that can indicate the ... Restriction enzymes are first used to recognize and then cut specific nucleic acid sequences. These cut pieces of DNA can be ... By knowing the epitope sequence of the antibody, ELISA can also be used for antigen detection in a sample. Histological methods ...
*  Arcobacter halophilus
"First multi-locus sequence typing scheme for Arcobacter spp". BMC Microbiology. 9 (1): 196. doi:10.1186/1471-2180-9-196. ISSN ... It is Gram-negative, and its type strain is LA31BT(=ATCC BAA-1022T =CIP 108450T). Donachie, S. P. (2005). "Arcobacter ... LPSN Arcobacter halophilus at the Encyclopedia of Life Type strain of Arcobacter halophilus at BacDive - the Bacterial ...
*  Horizontal gene transfer in evolution
Urwin, R; Maiden, MC (2003). "Multi-locus sequence typing: a tool for global epidemiology". Trends Microbiol. 11 (10): 479-87. ... Urwin, R; Maiden, MC (2003). "Multi-locus sequence typing: a tool for global epidemiology". Trends Microbiol. 11 (10): 479-87. ... One such approach, sometimes called 'multi-locus typing', has been used to deduce phylogenic trees for organisms that exchange ... This is the main conclusion of a 2005 study of more than 40 complete microbial genomic sequences by Fan Ge, Li-San Wang, and ...
*  Magnaporthe grisea
2005). "The genome sequence of the rice blast fungus Magnaporthe grisea". Nature. 434 (7036): 980-6. doi:10.1038/nature03449. ... The fungus has been able to establish resistance to both chemical treatments and genetic resistance in some types of rice ... Couch, B. C.; Kohn, L. M. (2002). "A multilocus gene genealogy concordant with host preference indicates segregation of a new ...