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*  Ancestral reconstruction
The "genome rearrangement problem", first posed by Watterson and colleagues, asks: given two genomes (permutations) and a set ... For example, consider a phylogeny recovered for a genus of plants containing 6 species A - F (Figure 1), where each plant is ... plants D, E, F), that the ancestral states for the nodes in the top clade (plants A, B, C) are equivocal and that both " ... "multiple genome rearrangement problem": given a set of genomes and a set of allowable operations, find (i) a binary tree with ...
*  Molecular phylogenetics
At present, it is still a long and expensive process to sequence the entire DNA of an organism (its genome). However, it is ... ISBN 0-86542-889-1. Soltis, P.S., Soltis, D.E., and Doyle, J.J. (1992) Molecular systematics of plants. Chapman & Hall, New ... ISBN 0-41202-231-1. Soltis, P.S., Soltis, D.E., and Doyle, J.J. (1998) Molecular Systematics of Plants II: DNA Sequencing. ...
*  Genome evolution
An example of increasing genome size over time is seen in filamentous plant pathogens. These plant pathogen genomes have been ... Whole genome duplication is common in fungi as well as plant species. An example of extreme genome duplication is represented ... Genome evolution is the process by which a genome changes in structure (sequence) or size over time. The study of genome ... namely that the number of genes that make up the genome does not correlate with genome size. In other words, the genome size is ...
*  The Plant Genome
... was published as a supplement to Crop Science. The Plant Genome is published three times per year in March, ... The Plant Genome is peer reviewed and publishes original research investigating all aspects of plant genomics. Technical ... The Plant Genome is an international, open-access, electronic scientific journal published by the Crop Science Society of ... The goal of The Plant Genome is to provide the readership with a short submission-to-online publication of the latest advances ...
*  Plant Genome Mapping Laboratory
PGML has led in the sequencing of the sorghum genome and the cotton genome. "Genome sequencing becomes cost effective". The ... The Plant Genome Mapping Laboratory (PGML) is a department of the University of Georgia, directed by Dr. Andrew H. Paterson. ... "Sorghum Genome Sequence Shows Variety of Possible Applications For The Plant". GrainNet. January 30, 2009. Retrieved 2009-10-05 ... Research topics include whole genome genetic mapping and physical mapping; polyploidy; ancient whole genome duplications; ...
*  1000 Plant Genomes Project
The list of plant genomes to be sequenced in the project is not random; instead plants that produce valuable chemicals or other ... While the 1000 Genomes Project has been initially estimated to cost up to $50 million USD, the 1000 Plant Genomes Project will ... While the 1000 Genomes Project focuses on genetic variation in a single species, the 1000 Plant Genomes Project looks at the ... Based on the few whole plant genomes collected so far, these non-coding regions will in fact make up the majority of the genome ...
*  List of sequenced plant genomes
... plant_genomes List of sequenced eukaryotic genomes List of sequenced animal genomes List of sequenced archaeal genomes List of ... This list of sequenced plant genomes contains plant species known to have publicly available complete genome sequences that ... "The Amaranth Genome: Genome, Transcriptome, and Physical Map Assembly". The Plant Genome. 9 (1). doi:10.3835/plantgenome2015.07 ... 2013). "The Reference Genome of the Halophytic Plant Eutrema salsugineum". Front Plant Sci. 4: 46. doi:10.3389/fpls.2013.00046 ...
*  The McClintock Prize for Plant Genetics and Genome Studies
Barbara McClintock, who received the Physiology or Medicine Nobel Prize in 1983 for her work on maize genome structure, ...
*  Tandemly arrayed genes
Plant Genome Diversity Volume 1: Plant Genomes, their Residents, and their Evolutionary Dynamics. Plant Genome Diversity. 1. ... Barker, Michael S.; Baute, Gregory J.; Liu, Shao-Lun (5 March 2012). "Duplications and turnover in plant genomes". In Wendel, ... TAGs represent a large proportion of genes in a genome, including between 14% to 17% of the human, mouse, and rat genomes. TAG ... Pan, Deng; Zhang, Liqing (2008). "Tandemly arrayed genes in vertebrate genomes". International Journal of Genomics. Hindawi ...
*  TOC1 (gene)
"AT5G61380 Locus Search". Plant Genome Duplication Database. University of Georgia. Gendron JM, Pruneda-Paz JL, Doherty CJ, ... plants with mutations in toc1 and plants in which RNAi was used to knock out toc1. These mutants with no functional toc1 showed ... It is plausible that these toc1 mutants can easily be used to produce plants in a shorter amount of time, with a smaller amount ... In contrast, Millar's group found the TOC1 protein to be a negative regulator, and the plant clock to be better modeled as a ...
*  Cold Spring Harbor Laboratory
Plant Biology Plant genome sequencing; epigenetics and stem cell fate; stem cell signaling; plant-environment interactions; ... "Genome-wide in situ exon capture for selective resequencing". Nat Genet. 39: 1522-7. doi:10.1038/ng.2007.42. PMID 17982454. ... In 2014, Zachary Lippman publishes toolkit of gene variations in flowering plants, allowing breeders to maximize yield of ... July 2004). "Large-scale copy number polymorphism in the human genome". Science. 305: 525-8. Bibcode:2004Sci...305..525S. doi: ...
*  Arun Kumar Sharma
Plant Genome: Biodiversity and Evolution. Science Publishers. ISBN 978-1-57808-413-5. A K Sharma (5 January 2006). Plant Genome ... Plant Genome: Biodiversity and Evolution. Science Publishers. ISBN 978-1-57808-413-5. A K Sharma (5 January 2006). Plant Genome ... Plant Genome: Biodiversity and Evolution (2 volumes), and Cytology of Different Species of Palms and Its Bearing on the ... Plant and Biotechnology Committee of the Department of Biotechnology, in 1997 and the Plant Science Research Committee of the ...
*  Asis Datta
He is the founder Director of the National Institute of Plant Genome Research and is credited with the discovery of genes that ... In 2002, when the National Centre for Plant Genome Research was upgraded as an autonomous institution under a new name, ... "NIPGR profile". National Institute of Plant Genome Research. 2015. Retrieved November 1, 2015. "Jawaharlal Nehru University ... National Institute of Plant Genome Research, Datta was appointed as its founder director. He worked at the institute till his ...
*  List of University of Calcutta people
"Scientist Profile NIPGR". National Institute of Plant Genome Research. 2018-01-26. Retrieved 2018-01-26. Kartik Chandra Dutt ( ... plant biologist, N-Bios laureate Farrukh Ahmed, poet Tarashankar Bandopadhyay, novelist Utpal K. Banerjee, writer Parvati ...
*  Debasis Chattopadhyay
Subsequently, he joined the National Institute of Plant Genome Research, New Delhi where he holds the position of a Grade VII ... His research focus is on abiotic stress tolerance and genome sequencing of plants and he holds a US patent for Chimeric ... "Scientist Profile NIPGR". National Institute of Plant Genome Research. 2018-01-26. Retrieved 2018-01-26. "Chimeric construct of ... geneticist and a scientist at the National Institute of Plant Genome Research (NIPGR). Known for his studies in the fields of ...
*  Sushil Kumar (biologist)
National Institute of Plant Genome Research. 2016. Retrieved September 28, 2016. "Sushil Kumar". Author profile. Bioversity ... his association with CSIR as an emeritus scientist from 2001 to 2005 when he moved to the National Institute for Plant Genome ... He is a former director of the Central Institute of Medicinal and Aromatic Plants of the Council of Scientific and Industrial ... The researches of Sushil Kumar which focused on the fields of plant and microbial genetical genomics are reported to have ...
*  R. Sowdhamini
Her team was successful in preparing the draft genome of Ocimum tenuiflorum (commonly known as Tulsi), a plant with medicinal ... "Indian scientists decode Tulsi plant genome". Deccan Herald. September 14, 2015. Retrieved 2017-12-26. "Genes to Olfaction: 60 ... Sowdhamini's research is in the fields of computational studies of protein science as well as genome sequencing and she is ... compounds responsible for the medicinal properties of the plant. She was the lead developer of 3DSwap, a database of 3D domain- ...
*  Veena Tandon
"Invited Lectures". National Institute of Plant Genome Research. 2016. Retrieved 13 August 2016. "Six from Northeast to receive ...
*  Genetic engineering
Malzahn, Aimee; Lowder, Levi; Qi, Yiping (2017-04-24). "Plant genome editing with TALEN and CRISPR". Cell & Bioscience. 7. doi: ... Zohary, Daniel; Hopf, Maria; Weiss, Ehud (2012). Domestication of Plants in the Old World: The origin and spread of plants in ... 733 (2003)[3] John Davison (2010)"GM plants: Science, politics and EC regulations" Plant Science 178(2):94-98 [4] GMO Compass: ... The frequency of gene targeting can be greatly enhanced through genome editing. Genome editing uses artificially engineered ...
*  Caulimoviridae
This family contains all plant viruses that consist of a double-stranded DNA genome that has a reverse transcribing phase in ... Harper G, Hull R, Lockhart B, Olszewski N (2002). "Viral sequences integrated into plant genomes". Annu Rev Phytopathol. 40: ... they do not require the integration of viral genome into the host's in order to replicate and for this reason their genome does ... The genomes of viruses from this family contain monopartite, double-stranded DNA in either an open circular or linear structure ...
*  Genetic memory (biology)
Gehring M, Henikoff S (2007). "DNA methylation dynamics in plant genomes". Biochim. Biophys. Acta. 1769 (5-6): 276-86. doi: ... Plants that undergo vernalization (promotion of flowering by a prolonged exposure to cold temperatures) record a genetic memory ... As a somatic memory, this state is not passed on to subsequent generations but has to be acquired by each individual plant. The ... The term applies for cellular memory, animals' memory, and plants' memory, as described in the following paragraphs. All cells ...
*  Paleopolyploidy
June 2006). "Widespread genome duplications throughout the history of flowering plants". Genome Res. 16 (6): 738-49. doi: ... For example, the model plant Arabidopsis thaliana, the first plant to have its entire genome sequenced, has experienced at ... Adams KL, Wendel JF (April 2005). "Polyploidy and genome evolution in plants". Curr. Opin. Plant Biol. 8 (2): 135-41. doi: ... It has been found that almost all flowering plants have undergone at least one round of genome duplication at some point during ...
*  Petunia vein clearing virus
This virus is known to infect plants, specifically Petunia hybrida. It carries a 7205 base pair genome of double-stranded DNA ... Harper, G; Hull, R; Lockhart, B; Olszewski, N (2002). "Viral sequences integrated into plant genomes". Annual Review of ... PVCV can exist as an endogenous provirus within the P. hybrida genome and may be induced by environmental stress or wounding. ... Descriptions of Plant Viruses: Petunia vein clearing virus ViralZone: Petuvirus. ...
*  Utricularia gibba
... more than plants with much larger genomes. The main difference between other plant genomes and that of U. gibba is a drastic ... Since that time, both plants have experienced episodes of whole genome duplication (WGD) in which the plants' DNA content ... At only 82 megabases, the genome is exceptionally small for a multicellular plant. Despite its size, the genome accommodates ... U. gibba has an exceptionally small genome for a plant, despite having a typical number of genes. The sequencing of its DNA ...
*  Banana streak virus
2002). "Viral Sequences Integrated into Plant Genomes". Annu. Rev. Phytopathol. 40: 119-136. doi:10.1146/annurev.phyto. ... 2010). "A Four-Partner Plant-Virus Interaction: Enemies Can Also Come from Within". Molecular Plant-Microbe Interactions. 23 ( ... 2010). "A Four-Partner Plant-Virus Interaction: Enemies Can Also Come from Within". Molecular Plant-Microbe Interactions. 23 ( ... have been shown to integrate into their host genomes. When the host is stressed, the integrated genome of BSV may be able to ...
*  Dickeya
"Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937". Journal of Bacteriology. 193 (8): 2076-7. doi:10.1128 ... Dickeya is a genus of the family Enterobacteriaceae that consists mainly of pathogens from herbaceous plants. Dickeya is the ...
*  Thellungiella
See the list of sequenced plant genomes. Thellungiella is an excellent model organism for several other reasons: it has a ... "Thellungiella". Natural Resources Conservation Service PLANTS Database. USDA. Retrieved 9 December 2015. Thellungiella genome ... Thellungiella is a genus of plants in the mustard family closely related to Arabidopsis, but in the subclade Eutremeae. In ... As a result, it has become an extremophile model for abiotic stress tolerance studies and two Thellungiella genomes have been ...