"SFU epidemiologist awarded Genome B.C. grant to develop COVID-19 statistical tool". eurekalert.org. May 5, 2020. Retrieved June ... They proposed a new method for choosing the best vaccine to fight and eliminate certain bacterial strains using genomic data ... During the COVID-19 pandemic in British Columbia, Colijn was awarded a Genome British Columbia grant to map the spread of COVID ... Sharma, Shradhha (February 3, 2020). "Pioneering SFU research customizes vaccines to reduce bacterial disease". sfu.ca. Simon ...
Zhulin, I.B. (2000) "A novel phototaxis receptor hidden in the cyanobacterial genome". Journal of molecular microbiology and ... Bacterial swimming is used in bacterial taxis (mediated by specific receptors and signal transduction pathways) for the ... A bacterial biofilm is a bacterial community attached into a surface through extracellular polymeric materials. Prior to ... Dozens of these structures can exist on the bacterial and archaeal surface. Twitching motility is a form of crawling bacterial ...
In E. coli these proteins include DiaA, SeqA, IciA, HU, and ArcA-P, but they vary across other bacterial species. A few other ... Wellcome Genome Campus. Retrieved 24 February 2017. Wolański M, Donczew R, Zawilak-Pawlik A, Zakrzewska-Czerwińska J (2014-01- ... Bacterial origins regulate orisome assembly, a nuclei-protein complex assembled on the origin responsible for unwinding the ... Frimodt-Møller J, Charbon G, Løbner-Olesen A (December 2016). "Control of bacterial chromosome replication by non-coding ...
2005) Accurate Multiplex Polony Sequencing of an Evolved Bacterial Genome. Science 309(5741), 1728 - 1732 Sequence and ... Genome Res. 2009 Sep;19(9):1527-41. Epub 2009 Jun 22. Patent: Reagents,Methods and Libraries for Bead-Based Sequencing Article ... by Oligo Ligation/Detection) - SEQanswers [1] Colorspace to FastQ example Smith et al., Genome Research 2008 18:1638-1642 ( ... Genome Research, 2008 18:1638-1642 Chetverin, NAR, 1993, Vol.21, No. 10 2349-2353 MATTHEW E. HUDSON (2008) Sequencing ...
"Genes but Not Genomes Reveal Bacterial Domestication of Lactococcus Lactis". PLOS ONE. 5 (12): e15306. Bibcode:2010PLoSO... ... in the genome of L. lactis MG1363. One of them, LLnc147, was shown to be involved in carbon uptake and metabolism. L. lactis ... Another route involves L. lactis being taken up by M cells because of its bacterial size and shape, and the major part of the ... This process, called genome erosion or reductive evolution, has been described in several other lactic acid bacteria. The ...
of gene pair conservation across nine bacterial and archaeal genomes. The method is most effective in prokaryotes with operons ... The adjacency of these two genes was shown to be conserved across nine different bacterial and archaeal genomes. Classification ... The Joint Genome Institute provides an Integrated Microbial Genomes and Microbiomes database (JGI IMG) that has a phylogenetic ... For instance, two or more separate proteins in a genome may be identified as fused into one single protein in another genome. ...
As a result, the genome of Hodgkinia has fractionated into three independent bacterial species each containing only a subset of ... "Idiosyncratic Genome Degradation in a Bacterial Endosymbiont of Periodical Cicadas". Current Biology. 27 (22): 3568-3575.e3. ... The Hodgkinia-Magicicada symbiosis is a powerful example of how bacterial endosymbionts drive the evolution of their hosts. The ...
Jiang W, Bikard D, Cox D, Zhang F, Marraffini LA (March 2013). "RNA-guided editing of bacterial genomes using CRISPR-Cas ... "CRISPR Genome Engineering Resources". Broad Institute. "Mojo Hand: Design Your Own TALENs". The Mayo Clinic. "TALEN Effector ... Chen C, Fenk LA, de Bono M (November 2013). "Efficient genome editing in Caenorhabditis elegans by CRISPR-targeted homologous ... Hisano Y, Ota S, Kawahara A (January 2014). "Genome editing using artificial site-specific nucleases in zebrafish". Development ...
Jiang W, Bikard D, Cox D, Zhang F, Marraffini LA (March 2013). "RNA-guided editing of bacterial genomes using CRISPR-Cas ... Whereas genome-editing by the catalytically active Cas9 nuclease can be accompanied by irreversible off-target genomic ... Genome-wide computational predictions or selection of Cas9 homologs with a longer PAM may reduce nonspecific targeting. ... August 2013). "Genome engineering of Drosophila with the CRISPR RNA-guided Cas9 nuclease". Genetics. 194 (4): 1029-1035. doi: ...
This approach has been used to sequence the genomes of some bacterial species including a strain of Vibrio cholerae. Algorithms ... De novo genome assembly is used when the genome to be assembled is not similar to any other organisms whose genomes have been ... Genome assembly is normally done by one of two methods: assembly using a reference genome as a scaffold, or de novo assembly. ... Genome assembly presents one of the most challenging tasks in genome sequencing as most modern DNA sequencing technologies can ...
... and Repeat-related Structures in Bacterial Genomes". Computing for Comparative Microbial Genomics: Bioinformatics for ... In other words, the direct repeats are nucleotide sequences present in multiple copies in the genome. Generally, a direct ... In directly repeated sequences of the tobacco plant genome, DNA double-strand breaks can be efficiently repaired by homologous ... are copies of transposable elements interspersed throughout the genome. Flanking (or terminal) repeats (terminal repeat ...
"Associations between inverted repeats and the structural evolution of bacterial genomes". Genetics. 164 (4): 1279-89. doi: ... Eichler, EE (August 1998). "Masquerading repeats: paralogous pitfalls of the human genome". Genome Research. 8 (8): 758-62. doi ... and Repeat-related Structures in Bacterial Genomes". Computing for Comparative Microbial Genomics: Bioinformatics for ... folds into a double-pseudoknot structure and self-cleaves its circular genome to produce a single-genome-length RNA. ...
In some bacterial genomes, there is an enrichment of guanine over cytosine and thymine over adenine on the leading strand and ... Journal of molecular evolution 50, 249-257 (2000). Rocha, E. P. The replication-related organization of bacterial genomes. ... GC skew in protein-coding genes between the leading and lagging strands in bacterial genomes: new substitution models ... and signal sequences to base-composition asymmetries in bacterial genomes. ...
... this saves space in the viral genome. Various bacterial organelles with an icosahedral shape were also found. The icosahedral ... S. Draggan and C. Cleveland Bobik, T.A. (2007), "Bacterial Microcompartments", Microbe, Am. Soc. Microbiol., 2: 25-31, archived ...
Leipe DD, Aravind L, Grishin NV, Koonin EV (January 2000). "The bacterial replicative helicase DnaB evolved from a RecA ... duplication". Genome Research. 10 (1): 5-16. doi:10.1101/gr.10.1.5 (inactive 1 August 2023). PMID 10645945.{{cite journal}}: ...
The ancestral bacterial Ku is a homodimer (two copies of the same protein bound to each other). Eukaryotic Ku is a heterodimer ... These mice exhibit chromosomal instability, indicating that NHEJ is important for genome maintenance. In many organisms, Ku has ... Bacterial and archaeal Ku proteins are unlike their eukaryotic counterparts in that they only have the central beta-barrel ... Doherty AJ, Jackson SP, Weller GR (July 2001). "Identification of bacterial homologues of the Ku DNA repair proteins". FEBS ...
"Superfamily: Bacterial photosystem II reaction centre, L and M subunits". SCOP. G Protein-Coupled Receptor Data Base Terakita A ... 2005). "The opsins". Genome Biol. 6 (3): 213. doi:10.1186/gb-2005-6-3-213. PMC 1088937. PMID 15774036. Calculated positions of ... Examples are bacterial sensory rhodopsins, channelrhodopsins, bacteriorhodopsins, halorhodopsins, proteorhodopsins, ... Their functions range from bacterial photosynthesis (bacteriorhodopsin) to driving phototaxis (channelrhodopsins in flagellates ...
Cobalamin synthetase is a bacterial enzyme that makes vitamin B12. In the distant past, a common ancestor to mice and apes ... The Chimpanzee Genome Project was an effort to determine the DNA sequence of the chimpanzee genome. Sequencing began in 2005 ... "Chimpanzee genome database (Genome Data Viewer Pan troglodytes (chimpanzee))". Caswell JL, Mallick S, Richter DJ, Neubauer J, ... After the completion of the Human genome project, a common chimpanzee genome project was initiated. In December 2003, a ...
"Conserved clusters of functionally related genes in two bacterial genomes". Journal of Molecular Evolution. 44 (1): 66-73. ... "Expansion of the BioCyc collection of pathway/genome databases to 160 genomes". Nucleic Acids Research. 33 (19): 6083-6089. doi ... Karp, P. D.; Ouzounis, C.; Paley, S. (1996). "HinCyc: a knowledge base of the complete genome and metabolic pathways of H. ... Enright, A. J.; Iliopoulos, I.; Kyrpides, N. C.; Ouzounis, C. A. (1999). "Protein interaction maps for complete genomes based ...
The genome of a bacterial species fundamentally determines its identity. Thus, gel electrophoresis techniques like pulsed-field ... Genetic epidemiology Genome-wide association study Genomics Molecular medicine Personalized medicine Precision medicine "What ... Due to its widespread use and ability to analyse epidemiological information about most bacterial pathogens based on their ... to comparatively analyze patterns of bacterial chromosomal fragments and to elucidate the genomic content of bacterial cells. ...
"RNA-guided editing of bacterial genomes using CRISPR-Cas systems". Nature Biotechnology. 31 (3): 233-239. doi:10.1038/nbt.2508 ... Using bacterial genetics, he determined that CRISPR-Cas immunity uses sequence-specific DNA destruction to neutralize invaders ... "Multiplex Genome Engineering Using CRISPR/Cas Systems". Science. 339 (6121): 819-823. Bibcode:2013Sci...339..819C. doi:10.1126/ ... of MIT and Harvard that culminated in the development of the revolutionary CRISPR-Cas9 technologies to edit the genomes of ...
... sequences into the bacterial genome located between repeating CRISPR loci. Cas endonucleases are able to initiate double strand ... No-SCAR genome editing is an editing method that is able to manipulate the Escherichia coli (E. coli) genome. The system relies ... "RNA-guided editing of bacterial genomes using CRISPR-Cas systems". Nature Biotechnology. 31 (3): 233-239. doi:10.1038/nbt.2508 ... coli genome. This allows a transfected, linear DNA sequence to be incorporated into the genome, relying on the cellular ...
Petit, Robert A.; Read, Timothy D. (2020). "Bactopia: A Flexible Pipeline for Complete Analysis of Bacterial Genomes". mSystems ... A*STAR Genome Institute of Singapore, and the Swedish National Genomics Infrastructure. Efforts to share, harmonize, and curate ... and efficient ancient genome reconstruction with nf-core/Eager". PeerJ. 9: e10947. doi:10.7717/peerj.10947. PMC 7977378. PMID ... Genome Biology. 23 (1): 69. doi:10.1186/s13059-022-02624-y. PMC 8892804. PMID 35241129. Othman, Houcemeddine; Jemimah, Sherlyn ...
November 2009). "Impact of genome reduction on bacterial metabolism and its regulation". Science. 326 (5957): 1263-1268. ... Sequencing of the M. pneumoniae genome in 1996 revealed it is 816,394 bp in size. The genome contains 687 genes that encode for ... book Mycoplasma pneumoniae genome Type strain of Mycoplasma pneumoniae at BacDive - the Bacterial Diversity Metadatabase (CS1: ... Only 12 - 29% of energy metabolism is directed at cell growth, which is unusually low for bacterial cells, and is thought to be ...
"Evolutionary and Comparative Analysis of Bacterial Nonhomologous End Joining Repair". Genome Biology and Evolution. 12 (12): ... June 2004). "Impact of the KU80 pathway on NHEJ-induced genome rearrangements in mammalian cells". Mol. Cell. 14 (5): 611-23. ... September 2006). "Mycobacteriophage exploit NHEJ to facilitate genome circularization". Mol. Cell. 23 (5): 743-8. doi:10.1016/j ... also encode Ku homologs and exploit the NHEJ pathway to recircularize their genomes during infection. Unlike homologous ...
Its genome has been sequenced. Parte, A.C. "Lentisphaera". LPSN. Cho, J. C.; Vergin, K. L.; Morris, R. M.; Giovannoni, S. J. ( ... They are part of the natural surface bacterial population in the Atlantic and Pacific oceans. They are less than 1% of the ... Thrash, J. Cameron; Cho, Jang-Cheon; Vergin, Kevin L.; Morris, Robert M.; Giovannoni, Stephen J. (June 2010). "Genome Sequence ... Lentisphera araneosa is a marine bacteria strain in the bacterial phylum Lentisphaerota. They are able to produce viscous ...
"Bacterial artificial chromosome libraries for mouse sequencing and functional analysis". Genome Research. 10 (1): 116-128. ISSN ... P1 has the ability to copy a bacteria's host genome and integrate that DNA information into other bacteria hosts, also known as ... A P1-derived artificial chromosome, or PAC, is a DNA construct derived from the DNA of P1 bacteriophages and Bacterial ... This feature has been commonly used for: building genome libraries for human, mouse, etc, helps with projects such as Human ...
... and since the numerous genes promoting DNA transfer are in the plasmid genome rather than in the bacterial genome, it has been ... Bacterial conjugation is the transfer of genetic material between bacterial cells by direct cell-to-cell contact or by a bridge ... Classical E. coli bacterial conjugation is often regarded as the bacterial equivalent of sexual reproduction or mating since it ... Dr.T.S.Ramarao M.sc, Ph.D. (1991). B.sc Botany-Volume-1. Patkowski, Jonasz (21 April 2023). "F-pilus, the ultimate bacterial ...
"Bacterial genome databases". WGS projects info by EBI. "WGS projects". Genome Browser NCBI. "Genome information by organism". ... Genome Project List of sequenced eukaryotic genomes List of sequenced bacterial genomes List of sequenced archaeal genomes ... Genome Browser EMBL. "Access to Completed Genomes". Microbial Genomes Database. "MBGD". "2Can Support Portal < EMBL-EBI". www. ... In addition, whole genome sequencing data may be used to back calculate to the different pre-whole genome sequencing genotyping ...
"Variation in the Complex Carbohydrate Biosynthesis Loci of Acinetobacter baumannii Genomes". PLOS ONE. 8 (4): e62160. Bibcode: ... Bacterial cell structure Quellung reaction, a method to visualize capsule under a microscope Peterson JW (1996). Bacterial ... When viewed, bacterial capsules appear as a bright halo around the cell on a dark background. The capsule is considered a ... Most bacterial capsules are composed of polysaccharide, but some species use other materials, such as poly-D-glutamic acid in ...