*Ancestral reconstruction

... it has also been used to test evolutionary mechanisms at the level of bacterial genomes and primate gene sequences. RNA viruses ... The "genome rearrangement problem", first posed by Watterson and colleagues, asks: given two genomes (permutations) and a set ... "multiple genome rearrangement problem": given a set of genomes and a set of allowable operations, find (i) a binary tree with ... "Reconstructing contiguous regions of an ancestral genome". Genome Research. 16 (12): 1557-1565. doi:10.1101/gr.5383506. ISSN ...

*Genome evolution

... in bacteria is well understood because of the thousands of completely sequenced bacterial genomes available. ... Genome evolution is the process by which a genome changes in structure (sequence) or size over time. The study of genome ... namely that the number of genes that make up the genome does not correlate with genome size. In other words, the genome size is ... Another mechanism of genome evolution is provided by transduction whereby bacteriophages introduce new DNA into a bacterial ...

*Bacterial genome

Bacterial genomes are generally smaller and less variant in size among species when compared with genomes of animals and single ... One of the smallest bacterial genomes ever to be sequenced is that of the endosymbiont Carsonella rudii. At 160 kbp, the genome ... A study that included, but was not limited to, 478 bacterial genomes, concluded that as genome size increases, the number of ... The relationship between life-styles of bacteria and genome size raises questions as to the mechanisms of bacterial genome ...

*List of sequenced bacterial genomes

For the genomes of archaea see list of sequenced archaeal genomes. Genome project Human microbiome project List of sequenced ... an up-to-date electronic atlas of annotated bacterial genomes SUPERFAMILY comparative genomics database Includes genomes of ... 2000). "Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS". Nature. 407 (6800): 81-6. Bibcode: ... 2005). "The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice". Nucleic ...

*Genome instability

Darmon, E; Leach, DRF (2014). "Bacterial Genome Instability". Microbiol. Mol. Biol. Rev. 78: 1-39. doi:10.1128/MMBR.00035-13. ... In cancer, genome instability can occur prior to or as a consequence of transformation. Genome instability can refer to the ... Genome instability (also genetic instability or genomic instability) refers to a high frequency of mutations within the genome ... Genome instability does occur in bacteria. In multicellular organisms genome instability is central to carcinogenesis, and in ...

*Multicopy single-stranded DNA

ISBN 0-87969-382-7. Lampson BC, Inouye M, Inouye S (2005). "Retrons, msDNA, and the bacterial genome" (PDF). Cytogenet. Genome ... The Dynamic Bacterial Genome. Advances in Molecular and Cellular Microbiology. 8. Cambridge University Press. ISBN 978-0-511- ... Inouye S.; Inouye M. (1993). "Bacterial Reverse Transcriptase". In Goff, Stephen and Anna M. Skalka. Reverse transcriptase. ... save for the observed fact that msDNA is widely yet sporadically dispersed among bacterial species in a manner suggestive of ...

*Chlamydia (genus)

"EMBL bacterial genomes". Retrieved January 19, 2012. Read, T. D.; Brunham, R. C.; Shen, C.; Gill, S. R.; Heidelberg, J. F.; ... The DNA genome, proteins, and ribosomes are retained in the reticulate body. This occurs as a result of the development cycle ... Table 1. Genome features of selected Chlamydia species and strains. MoPn is a mouse pathogen while strain "D" is a human ... Some species also contain a DNA plasmids or phage genomes (see Table). The elementary body contains an RNA polymerase ...

*Helicobacter pametensis

Billy Bourke; Sherman, Philip M. (2006). Bacterial Genomes and Infectious Diseases. Humana P.,U.S. ISBN 1-59745-152-5. Terio, K ... Helicobacter pametensis at the Encyclopedia of Life LPSN Type strain of Helicobacter pametensis at BacDive - the Bacterial ...

*DNA adenine methyltransferase identification

This modified nucleotide is absent from the vast majority of eukaryotes, but is widespread in bacterial genomes, as part of the ... Brooks J. E.; Roberts R. J. (1982). "Modification profiles of bacterial genomes". Nucleic Acids Res. 10 (3): 913-34. doi: ... Every sequence of the genome that shares homology or identity with the plasmid may thus appear to be bound by the protein of ... The resolution of DamID is a function of the availability of GATC sequences in the genome. A protein can only be mapped within ...

*Helicobacter trogontum

Billy Bourke; Sherman, Philip M. (2006). Bacterial Genomes and Infectious Diseases. Humana P.,U.S. ISBN 1-59745-152-5. Kaakoush ...

*Helicobacter canadensis

link) Billy Bourke; Sherman, Philip M. (2006). Bacterial Genomes and Infectious Diseases. Humana P.,U.S. ISBN 1-59745-152-5. ... Its genome has been sequenced. Fox, James G.; et al. (2000). "Helicobacter canadensis sp. nov. isolated from humans with ... 2009). "Genome sequence of the emerging pathogen Helicobacter canadensis". Journal of Bacteriology. 191 (17): 5566-5567. doi: ...

*Helicobacter acinonychis

Billy Bourke; Sherman, Philip M. (2006). Bacterial Genomes and Infectious Diseases. Humana P.,U.S. ISBN 1-59745-152-5. Terio, K ...

*Helicobacter brantae

Billy Bourke; Sherman, Philip M. (2006). Bacterial Genomes and Infectious Diseases. Humana P.,U.S. ISBN 1-59745-152-5. Terio, K ... Pathogenesis of bacterial infections in animals. John Wiley & Sons, 2008. Helicobacter brantae at the Encyclopedia of Life LPSN ...

*Proline-Rich Coiled Coil 1

Kagachi, Chihiro (2007). "A Comparison of Bacterial Genomes". Seikagaku- The Journal of Japanese Biochemical Society. "NTPase [ ... The DUF84 region is found in the genome of a bacterium called Vibrio cholerae. The region consists of approximately 183 amino ...

*Helicobacter cholecystus

"Bacterial genomes and infectious diseases." Pediatric research 54.1 (2003): 1-7. Hau, Jann, and Steven J. Schapiro, eds. ... Pathogenesis of bacterial infections in animals. Wiley. com, 2008. Helicobacter cholecystus at the Encyclopedia of Life LPSN. ...

*Retron

Lampson BC, Inouye M, Inouye S (2005). "Retrons, msDNA, and the bacterial genome" (PDF). Cytogenet Genome Res. 110 (1-4): 491-9 ... A retron is a distinct DNA sequence found in the genome of many bacteria species that codes for reverse transcriptase and a ... The second family of bacterial retroelement, DGRs, are not mobile, but function to diversify DNA sequences. For example, DGRs ... Since retrons are not mobile, their appearance in diverse bacterial species is not a "selfish DNA" phenomenon. Rather, retrons ...

*Global microbial identifier

"Bacterial genome databases". WGS projects info by EBI. "WGS projects". Genome Browser NCBI. "Genome information by organism". ... Genome Project List of sequenced eukaryotic genomes List of sequenced bacterial genomes List of sequenced archaeal genomes ... "Access to Completed Genomes". Microbial Genomes Database. "MBGD". "Other genomic databases via EBI". DOE's Joint Genome ... 2012). "Integrating Genome-based Informatics to Modernize Global Disease Monitoring, Information Sharing, and Response". Emerg ...

*Myxobacteria

One of the myxobacteria, Minicystis rosea, has the largest bacterial genome with over 16 million nucleotides. The second ... "Insights from 20 years of bacterial genome sequencing". Functional & Integrative Genomics. 15 (2): 141-161. doi:10.1007/s10142- ... 2007). "Complete genome sequence of the myxobacterium Sorangium cellulosum". Nature Biotechnology. 25 (11): 1281-1289. doi: ... The myxobacteria have very large genomes, relative to other bacteria, e.g. 9-10 million nucleotides except for Anaeromyxobacter ...

*Gene

... likely examples have been identified of protist and alga genomes containing genes of bacterial origin. The genome is the total ... The genome size, and the number of genes it encodes varies widely between organisms. The smallest genomes occur in viruses ( ... "Integr8 - A.thaliana Genome Statistics:". "Understanding the Basics". The Human Genome Project. Retrieved 26 April 2015. "WS227 ... International Human Genome Sequencing Consortium (October 2004). "Finishing the euchromatic sequence of the human genome". ...

*Engineering biology

Design and synthesis of a minimal bacterial genome. Science, 351(6280), aad6253. doi: 10.1126/science.aad6253 Schuergers, N., ...

*Mycoplasma mycoides

... mycoides genome and implanted it into a DNA-free bacterial shell of Mycoplasma capricolum; the resulting organism was shown to ... "Design and synthesis of a minimal bacterial genome". Science. 351 (6280): aad6253. doi:10.1126/science.aad6253. ISSN 0036-8075 ... A comparison of these two genomes revealed a common set of 256 genes which the team thinks could represent a minimal set of ... "World's first genome transplant - a step forward towards creating synthetic life forms". ZME Science. "Sizing up the 'synthetic ...

*Mycoplasma genitalium

The molecular size of the synthetic bacterial genome is 360,110 kilodaltons (kDa). Printed in 10-point font, the letters of the ... The small genome of M. genitalium made it the organism of choice in The Minimal Genome Project, a study to find the smallest ... It was the second complete bacterial genome ever sequenced, after Haemophilus influenzae. In 2006, the team at the J. Craig ... "Venter Institute Scientists Create First Synthetic Bacterial Genome". J. Craig Venter Institute. Retrieved 9 August 2014. ...

*Nancy A. Moran

Daubin, V.; Moran, N. A.; Ochman, H. (2003). "Phylogenetics and the Cohesion of Bacterial Genomes". Science. 301 (5634): 829- ... "Differential Genome Evolution Between Companion Symbionts in an Insect-Bacterial Symbiosis". mBio. 5 (5): e01697-14. doi: ... She has also expanded the scale of her research to bacterial evolution as a whole. She believes that a good understanding of ... In 2013, she returned to the University of Texas at Austin, where she continues to conduct research on bacterial symbionts in ...

*Achromobacter xylosoxidans

List of sequenced bacterial genomes "Genus Achromobacter". LPSN (List of Prokaryotic Names with Standing in Nomenclature). ... In 2013, the complete genome of an A. xylosoxidans strain from a patient with cystic fibrosis was sequenced. A. xylosoxidans is ... 22 July 2013). "Complete Genome Sequence of the Cystic Fibrosis Pathogen Achromobacter xylosoxidans NH44784-1996 Complies with ... UniProt entry for Achromobacter xylosoxidans Type strain of Achromobacter xylosoxidans at BacDive - the Bacterial Diversity ...

*Corynebacterium glutamicum

List of sequenced bacterial genomes Kalinowski, J; Bathe, B; Bartels, D; Bischoff, N; Bott, M; et al. (4 September 2003). "The ... PMC 3264075 . Genome sequence for C. glutamicum from NCBI. Type strain of Corynebacterium glutamicum at BacDive - the Bacterial ... Yangyong Lv (Feb 2012). "Genome Sequence of Corynebacterium glutamicum ATCC 14067, Which Provides Insight into Amino Acid ... complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of l-aspartate-derived amino ...

*Phage display

However, this led to the incorporation of more helper phage genomes rather than phagemid genomes. In all cases, phage display ... Phage eluted in the final step can be used to infect a suitable bacterial host, from which the phagemids can be collected and ... Those that remain can be eluted, used to produce more phage (by bacterial infection with helper phage) and so produce a phage ... Following further bacterial-based amplification, the DNA within in the interacting phage is sequenced to identify the ...

*Evolution of cells

Daubin, V; Moran, NA; Ochman, H (2003). "Phylogenetics and the cohesion of bacterial genomes". Science. 301 (5634): 829-32. ... analysis of the complete genome of the eukaryote yeast shows that many of its genes are more closely related to bacterial genes ... One partner of this symbiosis is proposed to be a bacterial cell, and the other an archaeal cell. It is postulated that this ... The next stage in this scheme was transfer of both partner genomes into the nucleus and their fusion with one another. Several ...