The DNA is transcribed, at a high speed, in the nucleolus, which contains all 45S rRNA genes. The only exception is the 5S rRNA ... The rRNA transcript is cleaved at the A2 site, and this separates the early 40S pre-ribosome from the remaining pre-rRNA that ... A reduced amount of rRNA means that ribosomal proteins (r-proteins) will be translated but will not have an rRNA to bind to. ... Cleavage of the 20S pre-rRNA at the D-site creates the mature 18s rRNA. This cleavage event is dependent on several non- ...

It is now considered synonymous as the 16S rRNA genes are identical. In addition to being a plant pathogen, LsoA also serves as ... Detection of the liberibacteria is based on PCR amplification of their 16S rRNA gene with specific primers. Members of the ... This is due to adaptation to their host which often provides many nutrients, so that the parasite does not need genes to ... "Selection-driven gene loss in bacteria". PLOS Genetics. 8 (6): e1002787. doi:10.1371/journal.pgen.1002787. ISSN 1553-7404. PMC ...

Ding, L; Yokota, A (2002). "Phylogenetic analysis of the genus Aquaspirillum based on 16S rRNA gene sequences". FEMS Microbiol ...

"A Molecular Phylogenetic Framework for the Phylum Ctenophora Using 18S rRNA Genes". Molecular Phylogenetics and Evolution. 21 ( ... In the genome of Mnemiopsis leidyi ten genes encode photoproteins. These genes are co-expressed with opsin genes in the ... Also, research on mucin genes, which allow an animal to produce mucus, shows that sponges have never had them while all other ... The genomic content of the nervous system genes is the smallest known of any animal, and could represent the minimum genetic ...

Nedelcu AM (December 2001). "Complex patterns of plastid 16S rRNA gene evolution in nonphotosynthetic green algae". Journal of ...

... differentiating between closely related microbial taxa using 16S rRNA gene data". Methods in Ecology and Evolution. 4 (12): ...

Loffler, F. E.; Sun, Q.; Li, J.; Tiedje, J. M. (1 April 2000). "16S rRNA Gene-Based Detection of Tetrachloroethene- ...

Strain SS9 has 14 ribosomal RNA (rRNA) genes on chromosome 1, and 1 on chromosome 2; this is the largest number of rRNA genes ... Based on 16S rRNA sequence P. profundum is closely related to the genus Vibrio, the most prominent species being the human ... Bartlett, D.H. and T.J. Welch, ompH gene expression is regulated by multiple environmental cues in addition to high pressure in ... In strain SS9 it has been shown that several stress response genes are up regulated in response to atmospheric pressure, these ...

The speciation of M. scandinavica was determined by 16S rRNA gene sequencing. Protein and physiological analysis of the cells ...

16S rRNA gene) for the type strain: D78649. Oshima K, Nishida H (May 2008). "Detection of the genes evolving under Ureaplasma- ...

A Molecular Phylogenetic Framework for the Phylum Ctenophora using 18S rRNA Genes. Molecular Phylogenetics and Evolution. Vol: ... A Molecular Phylogenetic Framework for the Phylum Ctenophora using 18S rRNA Genes. Molecular Phylogenetics and Evolution. Vol: ...

The most common are small subunit ribosomal RNA (rRNA) genes, such as 16S rRNA. These genes are frequently used in microbial ... the 16SrRNA gene and the 23SrRNA gene. These encode the small and large subunit genes in the rRNA operon. Between these two ... To perform T-RFLP (Figure 1), one must select a target gene (e.g. the 16S rRNA gene) to amplify by PCR. At least one primer ... This is beneficial in assessing microbial diversity due to the fact that the 16S rRNA gene does not vary much in size across ...

Loffler, F. E.; Sun, Q.; Li, J.; Tiedje, J. M. (2000). "16S rRNA Gene-Based Detection of Tetrachloroethene-Dechlorinating ...

The whole genome was sequenced (Genbank accession number JAELVH010000000); the 16S rRNA gene sequence can also be found on ... Genes involved in the formation of the gametes appeared close to the ones found in the rest of the animals. The sponge-feeding ... Annotation of the nuclear genome found 31,884 protein-coding genes. This sponge was named in honor of one of its discoverers, ... Double-stranded cDNA was sequenced on a GF FLX sequencer (Roche Applied Sciences/454 Life Sciences, Barnford, CT). rRNA ribo- ...

O. hominis strain OH-22803, 16S rRNA gene". www.ncbi.nlm.nih.gov. 29 August 2018. Lawrence, K.A. (2019). "Method for culturing ... Alternatively a clinical sample can be tested using a PCR assay targeting either the 16S rRNA gene or the conserved deamidating ... O. hominis can be identified from its unique 16S rRNA sequence. ... toxin gene ToxA. Ca. O. hominis may be cultured from clinical ...

The genes in the screen were named hgcA through hgcG ("high GC"). The HgcE has been renamed as Pf3 and identified as an H/ACA ... It was later identified as Pab105 H/ACA snoRNA with rRNA targets. HgcC family RNA HgcF RNA HgcG RNA SscA RNA Klein, RJ; ... The HgcE RNA (also known as Pf3 RNA) gene is a non-coding RNA that was identified computationally and experimentally verified ... Misulovin Z; Eddy SR (2002). "Noncoding RNA genes identified in AT-rich hyperthermophiles". Proc Natl Acad Sci USA. 99 (11): ...

Differentiating between closely related microbial taxa using 16S rRNA gene data". Methods in Ecology and Evolution. 4 (12): ... Before that, for many years the standard unit for marker-gene analysis was the operational taxonomic unit (OTU), which is ... Some have argued that ASVs should replace OTUs in marker-gene analysis. Their arguments focus on the precision, tractability, ... is any one of the inferred single DNA sequences recovered from a high-throughput analysis of marker genes. Because these ...

Ciliophora, Plagiopylida), with notes on its phylogeny based on SSU rRNA gene". European Journal of Protistology. 49 (1): 106- ... phylogeny-based database of small subunit rRNA gene sequences of ciliates". Environmental Microbiology. 20 (6): 2218-2230. doi: ...

Radax, Christian; Gruber, Claudia; Stan-Lotter, Helga (August 2001). "Novel haloarchaeal 16S rRNA gene sequences from Alpine ...

... differentiating between closely related microbial taxa using 16S rRNA gene data". Methods in Ecology and Evolution. 4 (12): ... differentiating between closely related microbial taxa using 16S rRNA gene data". Methods in Ecology and Evolution. 4 (12): ... Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences". The ISME Journal. 9 (4): 968-979 ...

Wright, A-DG (2006). "Phylogenetic relationships within the order Halobacteriales inferred from 16S rRNA gene sequences". Int. ... Techniques such as 16S rRNA analysis and DNA-DNA hybridization have been major contributors to taxonomic classification in ...

Gianfranco Tucci; Marco Cosimo Simeone; Carlo Gregori; Fabio Maggini (1994). "Intergenic spacers of rRNA genes in three species ...

Literature from 1976 used the term to describe specifically tRNA and rRNA. For experimental purposes, the expression of one or ... Validation of housekeeping genes should be performed before their use in gene expression experiments such as RT-PCR. Recently a ... Housekeeping genes account for majority of the active genes in the genome, and their expression is obviously vital to survival ... The key criterion for the use of a housekeeping gene in this manner is that the chosen housekeeping gene is uniformly expressed ...

"Metaproteomic and 16S rRNA Gene Sequencing Analysis of the Infant Fecal Microbiome". International Journal of Molecular ... P. vulgatus also posses the ldh gene, which codes for the production of D-lactate dehydrogenase, an enzyme that is responsible ...

"Entrez Gene: ESF1 ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)". Olsen JV, Blagoev B, Gnad F, et al. ( ... ESF1 homolog is a protein that in humans is encoded by the ESF1 gene. GRCh38: Ensembl release 89: ENSG00000089048 - Ensembl, ... 2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome ... v t e (Articles with short description, Short description matches Wikidata, Genes on human chromosome 20, All stub articles, ...

Advantages over 16S rRNA amplicon sequencing are: not being limited to bacteria; strain-level classification where amplicon ... sequencing only gets the genus; and the possibility to extract whole genes and specify their function as part of the metagenome ...

The genes were named hgcA through hgcG ("high GC"). It was later identified as Pab40 H/ACA snoRNA with rRNA targets. HgcC ... The genes from this screen were named hgcA through hgcG ("high GC"). HgcG is of unknown function. hgcG is significantly similar ... The HgcG RNA gene is a non-coding RNA that was identified computationally and experimentally verified in AT-rich ... family RNA HgcE RNA HgcF RNA Klein RJ, Misulovin Z, Eddy SR (May 2002). "Noncoding RNA genes identified in AT-rich ...

"Robertsonian translocation 13/14 associated with rRNA genes overexpression and intellectual disability". Egyptian Journal of ... Hartwell, Leland (2011). Genetics From Genes to Genomes, 4e (4 ed.). New York: McGraw-Hill. pp. 443, 454. ISBN 9780073525266. ...

Wright AG (June 2006). "Phylogenetic relationships within the order Halobacteriales inferred from 16S rRNA gene sequences". ... branching pattern of various phylogenetic trees constructed from several different datasets of conserved proteins and 16S rRNA ...

The genes were named hgcA through hgcG ("high GC"). It was later identified as Pab35 H/ACA snoRNA with rRNA targets. HgcC ... The HgcF RNA gene is a non-coding RNA identified computationally and experimentally verified in AT-rich hyperthermophiles. ... family RNA HgcE RNA HgcG RNA SscA RNA Klein RJ, Misulovin Z, Eddy SR (May 2002). "Noncoding RNA genes identified in AT-rich ...