SeqA protein
... in Escherichia coli, OriC. Additionally the protein plays a further role in sequestration. The importance of this protein is ... Slomińska M, Wegrzyn A, Konopa G, Skarstad K, Wegrzyn G (June 2001). "SeqA, the Escherichia coli origin sequestration protein, ... Waldminghaus T, Skarstad K (May 2009). "The Escherichia coli SeqA protein". Plasmid. 61 (3): 141-50. doi:10.1016/j.plasmid. ... This protein domain is thought to be part of a much larger protein complex which includes other proteins such as SeqB. DNA ...
Protein production
Baneyx F (October 1999). "Recombinant protein expression in Escherichia coli". Current Opinion in Biotechnology. 10 (5): 411-21 ... Rosano, Germán; Ceccarelli, Eduardo (2014-04-17). "Recombinant protein expression in Escherichia coli: advances and challenges ... Gene expression Single-cell protein Protein purification Precision fermentation Host cell protein List of recombinant proteins ... E. coli strain BL21 and BL21(DE3) are two strains commonly used for protein production. As members of the B lineage, they lack ...
Cre-Lox recombination
"Cyclization recombinase [Escherichia coli] - Protein - NCBI". Sternberg N, Hamilton D (August 1981). "Bacteriophage P1 site- ... Protein-protein interactions drive and direct strand exchange. Energy is not compromised, since the protein-DNA linkage makes ... Cre recombinase proteins bind to the first and last 13 bp regions of a lox site forming a dimer. This dimer then binds to a ... The total protein has 343 amino acids. The C domain is similar in structure to the domain in the Integrase family of enzymes ...
CspA mRNA 5′ UTR
Goldstein J, Pollitt NS, Inouye M (January 1990). "Major cold shock protein of Escherichia coli". Proc. Natl. Acad. Sci. U.S.A ... Brandi A, Spurio R, Gualerzi CO, Pon CL (March 1999). "Massive presence of the Escherichia coli 'major cold-shock protein' CspA ... untranslated region of the cold shock cspA mRNA of Escherichia coli". J. Bacteriol. 181 (20): 6284-6291. doi:10.1128/JB.181.20. ... cspA protein is then produced in significantly higher quantities, making up over 2% of the cell's proteome during cold shock. ...
Universal stress protein
Protein Data Bank. doi:10.2210/pdb3fg9/pdb.. Siegele DA, et al. (2005). "Universal Stress Proteins in Escherichia coli". ... Diez A (2002). "The universal stress protein A of Escherichia coli is required for resistance to DNA damaging agents and is ... Gustavsson N (2002). "The universal stress protein paralogues of Escherichia coli are co-ordinately regulated and co-operate in ... 2005). "Differential Roles of the Universal Stress Proteins of Escherichia coli in Oxidative Stress Resistance, Adhesion, and ...
Glycolysis
Chowdhury S, Hepper S, Lodi MK, Saier MH, Uetz P (April 2021). "The Protein Interactome of Glycolysis in Escherichia coli". ... Allosteric inhibition and activation by Protein-protein interactions (PPI). Indeed, some proteins interact with and regulate ... PFK2 is phosphorylated by protein kinase A. The phosphorylation inactivates PFK2, and another domain on this protein becomes ... The diagram below shows human protein names. Names in other organisms may be different and the number of isozymes (such as HK1 ...
Scott D. Emr
Emr, Scott David (1981). Protein localization in Escherichia coli (PhD). Harvard University. Retrieved November 6, 2021. " ... protein transport in cells by vesicles and the role of arrestin and ubiquitylation in the degradation of membrane proteins. ... ESCRTs are required for the degradation of membrane protein at the lysosome, a late step in cytokinesis, and the budding and ... Suzuki, Sho W.; Emr, Scott D. (2018). "Membrane protein recycling from the vacuole/lysosome membrane". Journal of Cell Biology ...
Mycoplasma pneumoniae
Chowdhury S, Hepper S, Lodi MK, Saier MH, Uetz P (April 2021). "The Protein Interactome of Glycolysis in Escherichia coli". ... This is in contrast to another model organism, Escherichia coli, in which only 15% of its metabolic enzymes are essential. In ... This may be due to the fact that Mycoplasma pneumoniae's metabolome is less efficient than that of Escherichia coli. The ... Another protein considered to play an important role in adherence is P30, as M. pneumoniae cells with mutations in this protein ...
N-glycosyltransferase
Enterotoxigenic Escherichia coli uses a N-glycosyltransferase called EtpC to modify the EtpA protein, which is orthologous to ... November 2017). "A biosynthetic route for polysialylating proteins in Escherichia coli". Metabolic Engineering. 44: 293-301. ... and later in other bacterial species such as Escherichia coli. N-glycosyltransferases usually target adhesin proteins, which ... The N-glycosyltransferases are subdivided into two functional classes, the first (e.g several Yersinia, Escherichia coli and ...
Howard Ronald Kaback
Foster, D. L.; Boublik, M.; Kaback, H. R. (1983). "Structure of the lac carrier protein of Escherichia coli". J. Biol. Chem. ... Guan, L; Weinglass, AB; Kaback, HR (7 September 2001). "Helix packing in the lactose permease of Escherichia coli: localization ... "Site-directed sulfhydryl labeling of the lactose permease of Escherichia coli: helices IV and V that contain the major ... "The electrochemical gradient of protons and its relationship to active transport in Escherichia coli membrane vesicles". Proc. ...
David Schlessinger (geneticist)
Tissieres, A.; Schlessinger, D.; Gros, Françoise (1960). "Amino Acid Incorporation into Proteins by Escherichia coli Ribosomes ... Srivastava, A. K.; Schlessinger, D. (1988). "Coregulation of processing and translation: Mature 5' termini of Escherichia coli ... Schlessinger, David (1960). "Hypochromicity in ribosomes from Escherichia coli". Journal of Molecular Biology. 2 (2): 92-95. ... Luzzatto, Lucio; Schlessinger, David; Apirion, David (1968). "Escherichia coli : High Resistance or Dependence on Streptomycin ...
Protein K (porin)
1983). Outer membrane protein K of Escherichia coli: purification and pore-forming properties in lipid bilayer membranes. J ... Sutcliffe, J; Blumenthal, R; Walter, A; Foulds, J (1983). "Escherichia coli outer membrane protein K is a porin". Journal of ... Escherichia coli outer membrane protein K is a porin. J Bacteriol 156(2): 867-872 Bliss JM, Solver RP. (1996). Coating the ... a model for expression of capsular polysialic acid in Escherichia coli K1. Mol Microbiol 21:221. v t e (Outer membrane proteins ...
Major facilitator superfamily
Foster DL, Boublik M, Kaback HR (January 1983). "Structure of the lac carrier protein of Escherichia coli". The Journal of ... Protein domains, Transmembrane proteins, Articles containing video clips, Protein superfamilies, Transport proteins). ... Yin Y, He X, Szewczyk P, Nguyen T, Chang G (May 2006). "Structure of the multidrug transporter EmrD from Escherichia coli". ... Västermark A, Lunt B, Saier M (2014). "Major facilitator superfamily porters, LacY, FucP and XylE of Escherichia coli appear to ...
Sue Wickner
"Heat shock protein 90 from Escherichia coli collaborates with the DnaK chaperone system in client protein remodeling. Proc Natl ... S. Wickner (1978) "DNA Replication Proteins of Escherichia coli." Annu Review of Biochem. 78: 1163-1191. "Sue Wickner". Albert ... coli and chaperone function in yeast." Mol. Cell. 49(3):464-473. S. M. Doyle, O. Genest, and S. Wickner (2013) "Protein rescue ... and break down proteins. She has been a major contributor to the understanding of molecular chaperones, proteins that regulate ...
Calcium-activated potassium channel
Milkman R (Apr 1994). "An Escherichia coli homologue of eukaryotic potassium channel proteins". Proceedings of the National ... Jiang Y, Pico A, Cadene M, Chait BT, MacKinnon R (Mar 2001). "Structure of the RCK domain from the E. coli K+ channel and ... or may be through an additional calcium binding protein such as calmodulin. Knowing the structure of these channels can provide ... "Gating of the TrkH ion channel by its associated RCK protein TrkA". Nature. 496 (7445): 317-22. Bibcode:2013Natur.496..317C. ...
DNA-binding protein from starved cells
In Escherichia coli Dps protein is Induced by rpoS and IHF in the early stationary phase. Dps is also Induced by oxyR in ... A ferritin-like DNA-binding protein of Escherichia coli". The Journal of Biological Chemistry. 277 (31): 27689-96. doi:10.1074/ ... The first was discovered in Escherichia coli Dps in 1992 and has given the name to the protein family; during stationary phase ... "A novel DNA-binding protein with regulatory and protective roles in starved Escherichia coli". Genes & Development. 6 (12B): ...
Carbon monoxide dehydrogenase
... prismane protein') from Escherichia coli. Characterization of the hybrid-cluster protein, redox properties of the [2Fe-2S] and ... Protein engineering of the CODH/ACS in M.thermoacetica revealed that mutating residues, so as to functionally block the tunnel ... They are homodimers of around 130 kDa sharing a central [4Fe4S]-cluster at the surface of the protein - cluster D. The ... Role of a 22-kDa iron-sulfur protein in mediating electron transfer between carbon monoxide dehydrogenase and hydrogenase". The ...
Single-stranded binding protein
Meyer RR, Laine PS (December 1990). "The single-stranded DNA-binding protein of Escherichia coli". Microbiol. Rev. 54 (4): 342- ... "Crystal structure of the homo-tetrameric DNA binding domain of Escherichia coli single-stranded DNA-binding protein determined ... Protein heteropolymers, Protein families, DNA replication, Proteins, DNA-binding substances). ... Single-stranded binding proteins (SSBs) are a class of proteins that have been identified in both viruses and organisms from ...
1,N6-Ethanoadenine
Escherichia coli can fix these modifications using AlkB protein. Another way to produce it is via cyclisation of N6- ... N6-ethenoadenine in Escherichia coli cells". Mutagenesis. 26 (3): 401-406. doi:10.1093/mutage/geq107. PMID 21193516. Hang, B ( ... MacIejewska, A. M.; Sokolowska, B.; Nowicki, A.; Kusmierek, J. T. (2011). "The role of AlkB protein in repair of 1, ...
Cation channel superfamily
Milkman R (April 1994). "An Escherichia coli homologue of eukaryotic potassium channel proteins". Proceedings of the National ... Protein domains, Protein families, Transmembrane proteins, Ion channels). ... The HVCN1 and Putative tyrosine-protein phosphatase proteins do not contain an expected ion conduction pore domain, but rather ... The proteins with only two transmembrane helices (Pfam PF07885) are most commonly found in bacteria. This also includes the 2- ...
Topoisomerase
Wang JC (February 1971). "Interaction between DNA and an Escherichia coli protein omega". Journal of Molecular Biology. 55 (3 ... it is now called Escherichia coli (E. coli) topoisomerase I (topo I) and is a representative of the type IA family of enzymes. ... These include YacG and pentapeptide repeat proteins, such as QnrB1 and MfpA; these protein inhibitors also confer resistance to ... purification of Escherichia coli nalA gene product and its relationship to DNA gyrase and a novel nicking-closing enzyme". ...
Single-strand DNA-binding protein
... (SSB) is a protein found in Escherichia coli (E. coli) bacteria, that binds to single- ... February 2014). "Intramolecular binding mode of the C-terminus of Escherichia coli single-stranded DNA binding protein ... Meyer RR, Laine PS (December 1990). "The single-stranded DNA-binding protein of Escherichia coli". Microbiological Reviews. 54 ... "Crystal structure of the homo-tetrameric DNA binding domain of Escherichia coli single-stranded DNA-binding protein determined ...
Catherine Squires
Squires, C L; Pedersen, S; Ross, B M; Squires, C (1991). "ClpB is the Escherichia coli heat shock protein F84.1". Journal of ... Marr, Allen G.; Ingraham, John L.; Squires, Craig L. (1964). "EFFECT OF THE TEMPERATURE OF GROWTH OF ESCHERICHIA COLI ON THE ... Catherine Louise Kearney Squires was a microbiologist known for her work on ribosomal RNA using Escherichia coli as a model ... Squires' research established a mutant of Escherichia coli (strain Δ7) which had all seven of its rrn operons removed. Squires ...
His-tag
Hengen P (July 1995). "Purification of His-Tag fusion proteins from Escherichia coli". Trends in Biochemical Sciences. 20 (7): ... "Protein-Protein Interactions: Pull-Down Assays", Bacterial Protein Secretion Systems: Methods and Protocols, Methods in ... are often used for affinity purification of polyhistidine-tagged recombinant proteins expressed in Escherichia coli or other ... IMAC resins typically retain several prominent endogenous proteins as impurities. In E. coli for instance, a prominent example ...
Protein quinary structure
Peter B. Crowley; Elysian Chow; Tatiana Papkovskaia (2011). "Protein Interactions in the Escherichia coli Cytosol: An ... when measured inside cells of Escherichia coli. In particular, these proteins seemed to tumble as if they had molecular weights ... "Physicochemical code for quinary protein interactions in Escherichia coli". Proceedings of the National Academy of Sciences of ... the presence of many hydrophobic residues in the protein surface would slow down protein intracellular tumbling. Protein dipole ...
Lipoate-protein ligase
The acyl carrier protein of lipid synthesis donates lipoic acid to the pyruvate dehydrogenase complex in Escherichia coli and ... Morris TW, Reed KE, Cronan JE (June 1994). "Identification of the gene encoding lipoate-protein ligase A of Escherichia coli. ... Lipoate-protein ligase (EC 2.7.7.63, LplA, lipoate protein ligase, lipoate-protein ligase A, LPL, LPL-B) is an enzyme with ... "Crystal structure of lipoate-protein ligase A from Escherichia coli. Determination of the lipoic acid-binding site". The ...
Ribosomal protein L10 leader
Zengel JM, Lindahl L (1994). Diverse mechanisms for regulating ribosomal protein synthesis in Escherichia coli. Progress in ... Page for Ribosomal protein L10 leader at Rfam v t e (Articles with short description, Short description matches Wikidata, ... Other ribosomal protein leaders identified in the same study include those of L13, L19, L20 and L21. ... It is located in the 5′ untranslated regions of mRNAs encoding ribosomal proteins L10 and L12 (rplJ-rplL). A Rho-independent ...
L-form bacteria
Choi JH, Lee SY (June 2004). "Secretory and extracellular production of recombinant proteins using Escherichia coli". Appl. ... Joseleau-Petit D, Liébart JC, Ayala JA, D'Ari R (September 2007). "Unstable Escherichia coli L Forms Revisited: Growth Requires ... such as Bacillus subtilis or Escherichia coli. This is done by inhibiting peptidoglycan synthesis with antibiotics or treating ... Here, the absence of a cell wall can allow production of large amounts of secreted proteins that would otherwise accumulate in ...
Tac-Promoter
It is commonly used for protein production in Escherichia coli. Two hybrid promoters functional in Escherichia coli were ... "Tightly regulated tac promoter vectors useful for the expression of unfused and fused proteins in Escherichia coli". Gene. 69 ( ... This makes it suitable for high-efficiency protein production of a recombinant protein. The strong repression of expression in ... "Maltose Binding Protein Expression , NEB". www.neb.com. Retrieved 2016-02-26. Human artificial chromosome Yeast artificial ...
Bacterial DNA binding protein
Examples include the HU protein in Escherichia coli, a dimer of closely related alpha and beta chains and in other bacteria can ... Kim EA, Blair DF (October 2015). "Function of the Histone-Like Protein H-NS in Motility of Escherichia coli: Multiple ... The role of single-stranded DNA binding (SSB) protein during DNA replication in Escherichia coli cells has been studied, ... Balandina A, Claret L, Hengge-Aronis R, Rouviere-Yaniv J (February 2001). "The Escherichia coli histone-like protein HU ...