N. Puillandre, E. Strong, P. Bouchet, M. Boisselier, V. Couloux, & S. Samadi (2009), Identifying gastropod spawn from DNA ... coxI-conII intergenic sequences and conoidean evolution. Molecular Phylogenetics and Evolution 46: 215-223. S.T. Williams & T.F ... DNA) studies. Published accounts of genera within the Conidae (or Conilithidae) that include the genus Parviconus include J.K. ... particularly with the advent of nuclear DNA testing in addition to mDNA testing. However, in 2011, some experts still use the ...
N. Puillandre, E. Strong, P. Bouchet, M. Boisselier, V. Couloux, & S. Samadi (2009), Identifying gastropod spawn from DNA ... coxI-conII intergenic sequences and conoidean evolution. Molecular Phylogenetics and Evolution 46: 215-223. S.T. Williams & T.F ... DNA) studies. Published accounts of genera within the Conidae that include the genus Austroconus include J.K. Tucker & M.J. ... particularly with the advent of nuclear DNA testing in addition to mDNA testing. Many authorities continue to use the ...
N. Puillandre, E. Strong, P. Bouchet, M. Boisselier, V. Couloux, & S. Samadi (2009), Identifying gastropod spawn from DNA ... coxI-conII intergenic sequences and conoidean evolution. Molecular Phylogenetics and Evolution 46: 215-223. S.T. Williams & T.F ... DNA) studies. Published accounts of genera within the Conidae that include the genus Endemoconus include J.K. Tucker & M.J. ... particularly with the advent of nuclear DNA testing in addition to mDNA testing. However, in 2011, some experts still prefer to ...
N. Puillandre, E. Strong, P. Bouchet, M. Boisselier, V. Couloux, & S. Samadi (2009), Identifying gastropod spawn from DNA ... coxI-conII intergenic sequences and conoidean evolution. Molecular Phylogenetics and Evolution 46: 215-223. S.T. Williams & T.F ... DNA) studies. Published accounts of genera within the Conidae (or Conilithidae) that include the genus Perplexiconus include J. ... particularly with the advent of nuclear DNA testing in addition to mDNA testing. However, in 2011, some experts still use the ...
N. Puillandre, E. Strong, P. Bouchet, M. Boisselier, V. Couloux, & S. Samadi (2009), Identifying gastropod spawn from DNA ... coxI-conII intergenic sequences and conoidean evolution. Molecular Phylogenetics and Evolution 46: 215-223. S.T. Williams & T.F ... DNA) studies. Published accounts of genera within the Conidae that include the genus Calamiconus include J.K. Tucker & M.J. ... particularly with the advent of nuclear DNA testing in addition to mDNA testing. However, in 2011, some experts still prefer to ...
Therefore, it is also possible that the xerDC motif actually operates at the level of single-stranded DNA. In terms of ... "Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions". Nucleic Acids ... However, recombinases and integrases operate on DNA, which can sometimes be singled-stranded. ... secondary structure, RNA and DNA are difficult to distinguish when only sequence information is available. xerDC RNAs sometimes ...
This negative correlation consequently causes depletion of CpG due to intergenic DNA methylation which is mostly attributed to ... DNA damage appears to be the primary underlying cause of cancer. If accurate DNA repair is deficient, DNA damages tend to ... and the insertion into a host DNA can produce DNA methylation and provoke a spreading into the Flanking DNA area. This ... Therefore, the DNA methylation can lead eventually to the noticeably loss of CpG sites in neighboring DNA. Previous studies ...
This synthesis is initiated in the intergenic region of the DNA sequence by host RNA polymerase, which synthesizes a short RNA ... Replication of RF DNA is converted to production of phage ssDNA by coating of the DNA with p5 to form an elongated p5/DNA ... The host DNA polymerase III then uses this primer to synthesize the full complementary strand of DNA, yielding a double- ... As the p5 is stripped off the DNA, the progeny DNA is extruded across the membrane and wrapped in a helical casing of p8, to ...
For young orphan genes, it is sometimes possible to find homologous non-coding DNA sequences in sister taxa, which is generally ... Heinen TJ, Staubach F, Häming D, Tautz D (September 2009). "Emergence of a new gene from an intergenic region". Current Biology ... Levine MT, Jones CD, Kern AD, Lindfors HA, Begun DJ (June 2006). "Novel genes derived from noncoding DNA in Drosophila ...
All but one of these RNAs occur within roughly 6 kilobases of genomic DNA, and each of the 5 RNAs occurs between a different ... "Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions". Nucleic Acids ... This arrangement could suggest that the motif functions on the level of single-stranded DNA as attC sites that are part of an ...
... of intronic and intergenic regions. If this is true, this would imply that much non-coding DNA could be of more functional ... Ponting and Lunter (2006) speculate that underestimates may be even more severe in non-coding DNA, because non-coding DNA may ... of the DNA in the human genome. For example, Ponting and Lunter (2006) detect a modest 0.03% of non-coding DNA showing evidence ... this can still equate to a large amount of adaptively evolving non-coding DNA, since non-coding DNA makes up approximately 98% ...
They used ChIP-seq to provide supporting evidence that the H3K9me3 modification is mainly localized to intergenic regions. In ... so expressing it inappropriately can activate the transposon to insert itself within important genes and destabilizing the DNA ... such as methylations and acetylations can change gene expression patterns by activating or deactivating a region of DNA for ...
DNA Cell Biol. 35 (11): 691-695. doi:10.1089/dna.2016.3397. PMID 27529373. This article incorporates text from the United ... Cao C, Sun J, Zhang D, Guo X, Xie L, Li X, Wu D, Liu L (February 2015). "The long intergenic noncoding RNA UFC1, a target of ...
The only DNA sequence study of the entire family sampled 76 species for two noncoding chloroplast loci, rps16 and trnL-F. ... Oleaceae) and related genera based on three chloroplast intergenic spacers". Plant Systematics and Evolution. 294 (1-2): 57-64 ... Also, the family is notorious for incongruence between phylogenies based on plastid and nuclear DNA. The most likely cause of ... "Intricate patterns of phylogenetic relationships in the olive family as inferred from multi-locus plastid and nuclear DNA ...
Escherichia coli contains a number of small RNAs located in intergenic regions of its genome. The presence of at least 55 of ... a non-specific endonuclease that cleaves methylated and unmethylated DNA). Its activity requires RNA chaperone Hfq. RalR and ... Cell motility enhancing sRNA named Esr41, was discovered in intergenic region of pathogenic enterohemorrhagic E.coli (EHEC) ... Deep sequencing of RNA expressed during chemical stress and high cell density fermentation discovered 253 novel intergenic ...
These genes can occur 5′ or 3′ relative to the RNA, and on the same or opposite DNA strand. Occasionally, these proteins match ... "Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions". Nucleic Acids ...
This domain is associated with phages, and might bind single-stranded DNA. The latter fact suggests a possibility that the ... "Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions". Nucleic Acids ... DUF2815 actually functions as single-stranded DNA. The DUF2800 RNA motif is also often present upstream of DUF2815-encoding ...
Thus DNA methylation alone may be the primary factor conferring risk of suicidal behaviour. A study of allele of rs7208505 in ... The pair of genes are separated by a 548 bp intergenic region, and having a classical head-to-head gene pair motif share a ... The DNA methylation of SKA2 gene and the Single-nucleotide polymorphism rs7208505 genotype may have effects on suicidal ... such as DNA methylation) is correlated with suicidal tendencies and post-traumatic stress. SKA2 protein was first documented as ...
Erdemir T, Bilican B, Oncel D, Goding CR, Yavuzer U (Jan 2002). "DNA damage-dependent interaction of the nuclear matrix protein ... revealed by intergenic splicing to DISC1, a gene disrupted by a translocation segregating with schizophrenia". Genomics. 67 (1 ... Erdemir T, Bilican B, Oncel D, Goding CR, Yavuzer U (Jan 2002). "DNA damage-dependent interaction of the nuclear matrix protein ... This gene encodes a protein which specifically interacts with translin, a DNA-binding protein that binds consensus sequences at ...
"Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions". Nucleic Acids ... RNA motifs refer to conserved RNA structures discovered by bioinformatics that are found exclusively in metagenomics DNA ...
Cold-seep-1 motif RNAs are found in environmental DNA samples from a cold seep located in Norway. These metagenomic contigs are ... "Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions". Nucleic Acids ...
Commonly, these operons contain an sbcC gene, whose functional role relates to DNA repair. sbcC genes encode protein that ... "Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions". Nucleic Acids ...
Proximity to the UAS was chosen because deletions of DNA flanking the UAS left the nucleosome array unaltered, indicating that ... often focusing on the aforementioned GAL1-GAL10 intergenic region. The consensus is 5′-CGG-N11-CCG-3′. One study explored the ... Wion, Didier; Casadesus, Josep (March 2006). "N6-methyl-adenine: An epigenetic signal for DNA-protein interactions". Nature ... nucleosome positioning was not related to sequence-specific histone-DNA interactions. The role of specific regions of UASG was ...
... of nuclear ribosomal DNA and the trnL/F region of chloroplast DNA" (PDF). International Journal of Plant Sciences. 164 (2): 197 ... Ji Young Yang; Jae-Hong Pak (2006). "Phylogeny of Korean Rubus (Rosaceae) based on its (nrDNA) and trnL/F intergenic region ( ...
DNA hybridization studies have revealed that strains KU and BC13 exhibited 100% homology with each other, yet showed no DNA ... by sequence analyses of the PCR-amplified 16S-23S rDNA intergenic spacer (ITS) and restriction fragment length polymorphism. ... Thiobacillus species exhibit a tremendous amount of diversity in physiology and DNA composition, which was one reason for ...
... as well as various metagenomic sequences obtained from environmental DNA. DUF3085 motif RNAs likely function as cis-regulatory ... "Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions". Nucleic Acids ...
This DNA has often been referred to as "junk DNA". However, more recent analyses suggest that, although protein-coding DNA ... Francis WR, and Wörheide G (2017). "Similar ratios of introns to intergenic sequence across animal genomes". Genome Biology and ... DNA Repair 5.5: General Recombination Ch 6: How Cells Read the Genome: From DNA to Protein 6.1: DNA to RNA 6.2: RNA to Protein ... DNA and Chromosomes 4.1: The Structure and Function of DNA 4.2: Chromosomal DNA and Its Packaging in the Chromatin Fiber Ch 5: ...
However, in a few cases, the gene that is downstream of a COG3943 RNA is either located very far away or on the opposite DNA ... "Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions". Nucleic Acids ... COG3943 motifs are found in unknown bacteria whose genomic DNA was isolated from cow rumen. As of 2018, there is no specific, ...
... as phages often contain large transcripts made up of multiple genes encoded in the same DNA strand. Freshwater-2 RNAs observed ... "Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions". Nucleic Acids ...
2003). "The DNA sequence of human chromosome 7". Nature. 424 (6945): 157-64. Bibcode:2003Natur.424..157H. doi:10.1038/ ... Finta C, Zaphiropoulos PG (2002). "Intergenic mRNA molecules resulting from trans-splicing". J. Biol. Chem. 277 (8): 5882-90. ...